Wall clock time and date at job start Mon Mar 30 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.50589 * 2 1 4 4 C 1.53037 * 109.50488 * 239.87895 * 2 1 3 5 5 N 1.46850 * 109.52028 * 180.87945 * 4 2 1 6 6 C 1.46900 * 110.99740 * 185.83738 * 5 4 2 7 7 C 1.46929 * 111.22205 * 61.74456 * 5 4 2 8 8 C 1.53037 * 109.47910 * 298.28247 * 7 5 4 9 9 C 1.53114 * 109.31211 * 59.15772 * 8 7 5 10 10 H 1.09002 * 109.52724 * 182.41937 * 9 8 7 11 11 N 1.46505 * 109.52537 * 62.23025 * 9 8 7 12 12 C 1.34776 * 119.99664 * 84.99627 * 11 9 8 13 13 O 1.21681 * 120.00320 * 0.02562 * 12 11 9 14 14 C 1.46375 * 119.99773 * 179.97438 * 12 11 9 15 15 H 1.08005 * 119.99826 * 0.02562 * 14 12 11 16 16 C 1.40052 * 120.00233 * 180.02562 * 14 12 11 17 17 N 1.30672 * 119.99363 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00270 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47031 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47186 * 119.99690 * 18 16 14 21 21 H 1.48498 * 109.47025 * 240.00107 * 18 16 14 22 22 H 1.08998 * 109.47032 * 299.92349 * 1 2 3 23 23 H 1.09004 * 109.46428 * 59.92508 * 1 2 3 24 24 H 1.08999 * 109.46638 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46525 * 300.89453 * 4 2 1 26 26 H 1.08999 * 109.46457 * 60.87712 * 4 2 1 27 27 H 1.09001 * 109.47132 * 60.00369 * 6 5 4 28 28 H 1.08998 * 109.47131 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.47646 * 300.00138 * 6 5 4 30 30 H 1.08994 * 109.51866 * 178.25481 * 7 5 4 31 31 H 1.09007 * 109.45009 * 58.26164 * 7 5 4 32 32 H 1.09002 * 109.50283 * 299.19589 * 8 7 5 33 33 H 1.09003 * 109.50113 * 179.11776 * 8 7 5 34 34 H 0.97003 * 120.00081 * 265.00098 * 11 9 8 35 35 H 0.97001 * 119.99532 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0410 -0.7239 -1.2478 5 7 3.5093 -0.7425 -1.2375 6 6 4.0374 -1.3068 -2.4868 7 6 4.0238 -1.4733 -0.0712 8 6 3.5712 -0.7714 1.2112 9 6 2.0413 -0.7233 1.2491 10 1 1.7156 -0.1862 2.1399 11 7 1.5090 -2.0880 1.2768 12 6 1.3882 -2.7404 2.4499 13 8 1.7208 -2.1959 3.4860 14 6 0.8559 -4.1037 2.4776 15 1 0.5603 -4.5868 1.5580 16 6 0.7298 -4.7815 3.6966 17 7 1.0879 -4.1971 4.8092 18 14 0.0511 -6.5215 3.7320 19 1 -0.2775 -6.9528 2.3495 20 1 1.0677 -7.4377 4.3084 21 1 -1.1769 -6.5569 4.5661 22 1 -0.3633 0.5126 0.8907 23 1 -0.3632 0.5150 -0.8894 24 1 -0.3632 -1.0277 -0.0005 25 1 1.6649 -1.7469 -1.2537 26 1 1.6908 -0.2030 -2.1389 27 1 3.7014 -0.7021 -3.3291 28 1 5.1268 -1.3084 -2.4528 29 1 3.6757 -2.3281 -2.6056 30 1 5.1129 -1.4966 -0.1075 31 1 3.6383 -2.4928 -0.0827 32 1 3.9678 0.2437 1.2298 33 1 3.9395 -1.3221 2.0768 34 1 1.2436 -2.5219 0.4508 35 1 1.0002 -4.6665 5.6535 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164873487.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:45 Heat of formation + Delta-G solvation = -46.020660 kcal Electronic energy + Delta-G solvation = -16486.794776 eV Core-core repulsion = 13905.115532 eV Total energy + Delta-G solvation = -2581.679245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39021 -36.70222 -34.28280 -32.50728 -31.76540 -30.38977 -26.81274 -26.52220 -25.28468 -22.50595 -21.33506 -20.38442 -18.07137 -17.36964 -15.55847 -15.20243 -14.98005 -14.77623 -14.21279 -14.14068 -13.64122 -13.02703 -12.53216 -12.36009 -12.21531 -12.04574 -11.83069 -11.63503 -11.29714 -11.12518 -10.97673 -10.74925 -10.55503 -10.44675 -10.14582 -10.06810 -9.73358 -8.84496 -8.13355 -7.56387 -7.41159 -6.16498 -4.61806 3.12779 3.21096 3.25208 4.10490 4.14209 4.61381 4.93209 5.03527 5.18223 5.25318 5.46025 5.55987 5.66469 5.67782 5.76288 5.86378 5.88664 5.91766 5.96440 6.02211 6.24677 6.35883 6.42035 6.50263 6.63415 6.74953 6.77751 7.27508 7.31179 7.44796 7.96700 8.17264 8.36960 9.04804 9.58782 10.62934 10.83087 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034473 B = 0.007511 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.046370 B = 3727.156436 C = 3843.940458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.079 0.921 4 C 0.063 3.937 5 N -0.545 5.545 6 C 0.026 3.974 7 C 0.060 3.940 8 C -0.125 4.125 9 C 0.158 3.842 10 H 0.076 0.924 11 N -0.758 5.758 12 C 0.557 3.443 13 O -0.580 6.580 14 C -0.547 4.547 15 H 0.065 0.935 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.375 0.625 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 4.656 -11.869 12.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.065 4.065 5 N -0.269 5.269 6 C -0.123 4.123 7 C -0.068 4.068 8 C -0.164 4.164 9 C 0.052 3.948 10 H 0.094 0.906 11 N -0.413 5.413 12 C 0.361 3.639 13 O -0.463 6.463 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.729 3.271 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.207 0.793 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.388 5.530 -10.851 12.411 hybrid contribution -0.682 -1.973 -0.480 2.142 sum 1.706 3.557 -11.331 11.999 Atomic orbital electron populations 1.21731 0.94739 1.02455 1.01022 1.21425 0.95603 0.99868 0.94477 0.90250 1.22105 0.87133 0.99091 0.98202 1.61988 1.08209 1.54259 1.02454 1.22317 1.00293 0.97459 0.92183 1.22059 0.98816 0.95873 0.90055 1.21963 0.97448 1.00368 0.96632 1.20525 0.91818 0.85876 0.96605 0.90590 1.46215 1.70952 1.14238 1.09926 1.18167 0.78117 0.86473 0.81186 1.90591 1.54287 1.69197 1.32214 1.20923 1.45313 0.98441 0.93726 0.91709 1.25686 0.93469 0.98809 0.95150 1.70032 1.35255 1.36141 0.98269 0.86368 0.78942 0.82772 0.78972 1.18887 1.20208 1.20178 0.92449 0.93375 0.92062 0.94722 0.91345 0.91813 0.91712 0.95850 0.91661 0.94158 0.91878 0.90766 0.79259 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.02 37.16 0.33 -1.70 16 2 C -0.09 -1.43 2.67 -90.54 -0.24 -1.67 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C 0.06 0.88 4.59 -3.83 -0.02 0.86 16 5 N -0.54 -7.79 4.91 -242.89 -1.19 -8.98 16 6 C 0.03 0.30 9.59 60.06 0.58 0.88 16 7 C 0.06 0.96 5.33 -3.79 -0.02 0.94 16 8 C -0.12 -2.27 5.76 -26.65 -0.15 -2.42 16 9 C 0.16 3.05 2.28 -67.80 -0.15 2.90 16 10 H 0.08 1.67 7.59 -51.93 -0.39 1.28 16 11 N -0.76 -16.69 3.63 -55.09 -0.20 -16.89 16 12 C 0.56 15.66 7.71 -12.99 -0.10 15.56 16 13 O -0.58 -18.59 14.69 5.21 0.08 -18.52 16 14 C -0.55 -15.47 9.54 -35.63 -0.34 -15.81 16 15 H 0.06 1.70 7.85 -52.48 -0.41 1.29 16 16 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 17 N -0.77 -23.13 11.83 55.55 0.66 -22.47 16 18 Si 0.90 20.28 29.56 -169.99 -5.02 15.25 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.96 7.29 -51.93 -0.38 0.58 16 25 H 0.03 0.52 6.64 -51.93 -0.34 0.17 16 26 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.04 0.72 7.69 -51.92 -0.40 0.32 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.38 7.57 6.63 -40.82 -0.27 7.30 16 35 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -32.65 281.18 -7.21 -39.86 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.55 Total: 5.59 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.21 Total: 1.91 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.74 Total: -48.34 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.08 Total: -18.52 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.65 -7.21 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164873487.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.160 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds