Wall clock time and date at job start Mon Mar 30 2020 03:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 115.54593 * 2 1 4 4 C 1.53074 * 117.53583 * 145.71452 * 2 1 3 5 5 C 1.52994 * 117.50024 * 214.33352 * 2 1 3 6 6 H 1.09008 * 117.49981 * 144.97184 * 5 2 1 7 7 C 1.52997 * 117.50050 * 359.97190 * 5 2 1 8 8 N 1.46904 * 109.47441 * 175.08537 * 7 5 2 9 9 C 1.46893 * 111.00073 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46926 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00279 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99973 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47517 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 H 1.09001 * 109.47083 * 205.66915 * 1 2 3 23 23 H 1.09000 * 109.47604 * 325.66545 * 1 2 3 24 24 H 1.09000 * 109.47090 * 85.67220 * 1 2 3 25 25 H 1.08997 * 117.50907 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49573 * 214.95768 * 4 2 1 27 27 H 1.09004 * 109.46830 * 55.08816 * 7 5 2 28 28 H 1.08991 * 109.47287 * 295.09103 * 7 5 2 29 29 H 1.00899 * 111.00094 * 303.96143 * 8 7 5 30 30 H 1.08997 * 109.47527 * 60.00506 * 9 8 7 31 31 H 1.09007 * 109.47425 * 299.99937 * 9 8 7 32 32 H 0.97006 * 120.00171 * 0.02562 * 12 10 9 33 33 H 1.09005 * 109.46643 * 60.00620 * 13 12 10 34 34 H 1.08998 * 109.47481 * 300.00454 * 13 12 10 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2377 -1.1215 0.7646 5 6 2.2365 -1.1206 -0.7654 6 1 3.1712 -0.8744 -1.2693 7 6 1.3589 -2.1559 -1.4717 8 7 2.2083 -3.0738 -2.2425 9 6 1.3980 -4.0837 -2.9362 10 6 2.3018 -5.0053 -3.7139 11 8 3.5027 -4.8372 -3.6926 12 7 1.7756 -6.0165 -4.4329 13 6 2.6541 -6.9122 -5.1894 14 6 1.8229 -7.9483 -5.9010 15 1 0.7476 -7.9402 -5.8003 16 6 2.4350 -8.9067 -6.6807 17 7 3.7443 -8.9162 -6.8037 18 14 1.4046 -10.1914 -7.5623 19 1 2.2952 -11.0991 -8.3291 20 1 0.6350 -10.9780 -6.5653 21 1 0.4645 -9.5178 -8.4938 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3634 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6132 -1.8594 1.2682 26 1 3.1730 -0.8754 1.2673 27 1 0.6684 -1.6481 -2.1451 28 1 0.7940 -2.7202 -0.7298 29 1 2.7900 -2.5678 -2.8934 30 1 0.7080 -3.5890 -3.6198 31 1 0.8330 -4.6615 -2.2047 32 1 0.8150 -6.1508 -4.4503 33 1 3.3444 -7.4066 -4.5058 34 1 3.2188 -6.3346 -5.9212 35 1 4.1750 -9.5907 -7.3519 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166964152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:48 Heat of formation + Delta-G solvation = -25.737175 kcal Electronic energy + Delta-G solvation = -14886.829337 eV Core-core repulsion = 12306.029651 eV Total energy + Delta-G solvation = -2580.799687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98244 -38.28983 -34.99288 -34.05098 -32.30208 -29.21206 -28.29485 -26.76088 -24.14043 -22.19416 -21.68628 -19.97500 -19.42031 -17.14452 -16.20224 -15.93918 -15.43140 -15.24407 -14.63135 -14.22883 -13.90199 -13.58468 -13.18480 -12.90098 -12.69828 -12.25872 -12.23468 -11.89084 -11.67489 -11.47203 -11.25017 -10.99081 -10.85369 -10.31054 -10.11048 -9.98375 -9.40059 -9.01728 -8.71945 -8.32041 -7.84724 -6.15475 -4.22563 3.25781 3.30461 3.32024 3.41184 3.51921 3.88376 4.31479 4.49844 4.52080 4.71136 4.84955 5.07874 5.20336 5.25115 5.37314 5.40115 5.50881 5.56240 5.57571 5.64223 5.67163 5.70820 5.79259 6.06034 6.12880 6.95138 7.33491 7.42086 7.47256 7.54060 7.68735 7.98677 8.65400 8.80055 9.14043 9.44137 10.94737 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.077132 B = 0.003756 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.928290 B = 7452.278413 C = 7705.379904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.158 4.158 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.143 4.143 6 H 0.107 0.893 7 C 0.092 3.908 8 N -0.671 5.671 9 C 0.040 3.960 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.715 5.715 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.285 1.285 20 H -0.275 1.275 21 H -0.275 1.275 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.351 0.649 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.223 14.844 11.100 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.177 4.177 3 H 0.120 0.880 4 C -0.206 4.206 5 C -0.162 4.162 6 H 0.125 0.875 7 C -0.037 4.037 8 N -0.303 5.303 9 C -0.092 4.092 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.364 5.364 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.211 1.211 20 H -0.201 1.201 21 H -0.201 1.201 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.170 0.830 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.222 0.778 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.046 14.422 11.535 19.766 hybrid contribution -1.290 -0.316 -1.223 1.805 sum -8.336 14.106 10.312 19.360 Atomic orbital electron populations 1.21343 0.92993 1.01891 1.01777 1.22414 0.95357 0.94471 1.05446 0.87998 1.23133 1.02304 1.01000 0.94203 1.22305 1.01025 0.98596 0.94274 0.87472 1.21494 0.93643 0.92051 0.96541 1.60080 1.22573 1.16899 1.30781 1.21834 0.95186 0.94814 0.97413 1.20354 0.89149 0.82206 0.80274 1.90661 1.15343 1.72513 1.63636 1.46446 1.11080 1.30385 1.48498 1.19083 0.89802 0.87517 0.90607 1.21198 0.93442 1.13328 1.30295 0.91961 1.24959 0.95056 0.97716 0.96311 1.69970 1.08397 1.34965 1.38964 0.86465 0.79828 0.80959 0.79598 1.21065 1.20053 1.20089 0.92444 0.92339 0.92241 0.88749 0.88960 0.94966 0.90942 0.82979 0.92901 0.88657 0.77803 0.95525 0.95623 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.20 37.16 0.34 -0.57 16 2 C -0.16 -1.34 6.41 -90.58 -0.58 -1.92 16 3 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.17 -1.57 9.83 -26.69 -0.26 -1.83 16 5 C -0.14 -1.46 5.95 -90.62 -0.54 -2.00 16 6 H 0.11 1.14 8.13 -51.92 -0.42 0.72 16 7 C 0.09 1.00 5.05 -3.82 -0.02 0.99 16 8 N -0.67 -9.56 6.13 -115.06 -0.70 -10.26 16 9 C 0.04 0.58 6.17 -4.98 -0.03 0.55 16 10 C 0.50 10.04 7.87 -10.99 -0.09 9.96 16 11 O -0.54 -13.38 16.20 5.56 0.09 -13.29 16 12 N -0.71 -15.18 5.55 -61.48 -0.34 -15.52 16 13 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 14 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.43 7.84 -51.93 -0.41 0.03 16 25 H 0.09 0.86 7.94 -51.93 -0.41 0.44 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.33 7.77 -51.93 -0.40 -0.08 16 28 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 29 H 0.35 5.15 8.42 -39.29 -0.33 4.82 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 299.74 15.07 4.52 4.52 Total: -1.00 -32.03 299.74 -7.97 -40.00 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.63 Total: 5.88 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.62 Total: -1.65 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.31 Total: -51.37 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.03 -7.97 -40.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166964152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.266 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds