Wall clock time and date at job start Mon Mar 30 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 115.54593 * 2 1 4 4 C 1.53074 * 117.53583 * 145.71452 * 2 1 3 5 5 C 1.52994 * 117.50024 * 214.33352 * 2 1 3 6 6 H 1.09008 * 117.49981 * 144.97184 * 5 2 1 7 7 C 1.52997 * 117.50050 * 359.97190 * 5 2 1 8 8 N 1.46904 * 109.47441 * 175.08537 * 7 5 2 9 9 C 1.46893 * 111.00073 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46926 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00279 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99973 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00325 * 179.97438 * 12 10 9 14 14 C 1.50694 * 109.47517 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00179 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 H 1.09001 * 109.47083 * 205.66915 * 1 2 3 23 23 H 1.09000 * 109.47604 * 325.66545 * 1 2 3 24 24 H 1.09000 * 109.47090 * 85.67220 * 1 2 3 25 25 H 1.08997 * 117.50907 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49573 * 214.95768 * 4 2 1 27 27 H 1.09004 * 109.46830 * 55.08816 * 7 5 2 28 28 H 1.08991 * 109.47287 * 295.09103 * 7 5 2 29 29 H 1.00899 * 111.00094 * 303.96143 * 8 7 5 30 30 H 1.08997 * 109.47527 * 60.00506 * 9 8 7 31 31 H 1.09007 * 109.47425 * 299.99937 * 9 8 7 32 32 H 0.97006 * 120.00171 * 0.02562 * 12 10 9 33 33 H 1.09005 * 109.46643 * 60.00620 * 13 12 10 34 34 H 1.08998 * 109.47481 * 300.00454 * 13 12 10 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2377 -1.1215 0.7646 5 6 2.2365 -1.1206 -0.7654 6 1 3.1712 -0.8744 -1.2693 7 6 1.3589 -2.1559 -1.4717 8 7 2.2083 -3.0738 -2.2425 9 6 1.3980 -4.0837 -2.9362 10 6 2.3018 -5.0053 -3.7139 11 8 3.5027 -4.8372 -3.6926 12 7 1.7756 -6.0165 -4.4329 13 6 2.6541 -6.9122 -5.1894 14 6 1.8229 -7.9483 -5.9010 15 1 0.7476 -7.9402 -5.8003 16 6 2.4350 -8.9067 -6.6807 17 7 3.7443 -8.9162 -6.8037 18 14 1.4046 -10.1914 -7.5623 19 1 2.2952 -11.0991 -8.3291 20 1 0.6350 -10.9780 -6.5653 21 1 0.4645 -9.5178 -8.4938 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3634 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6132 -1.8594 1.2682 26 1 3.1730 -0.8754 1.2673 27 1 0.6684 -1.6481 -2.1451 28 1 0.7940 -2.7202 -0.7298 29 1 2.7900 -2.5678 -2.8934 30 1 0.7080 -3.5890 -3.6198 31 1 0.8330 -4.6615 -2.2047 32 1 0.8150 -6.1508 -4.4503 33 1 3.3444 -7.4066 -4.5058 34 1 3.2188 -6.3346 -5.9212 35 1 4.1750 -9.5907 -7.3519 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166964152.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:47 Heat of formation + Delta-G solvation = -49.594991 kcal Electronic energy + Delta-G solvation = -14887.863890 eV Core-core repulsion = 12306.029651 eV Total energy + Delta-G solvation = -2581.834239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54088 -39.18734 -36.33282 -35.78618 -34.33712 -30.41968 -29.35562 -28.27729 -25.50505 -24.00688 -22.41845 -21.43487 -20.47067 -18.89884 -17.60042 -17.25589 -16.90962 -16.66445 -16.21328 -15.63670 -15.19994 -14.73799 -14.29116 -14.11589 -14.00006 -13.73074 -13.53789 -13.14596 -12.93156 -12.86778 -12.65722 -12.35988 -12.23577 -12.02277 -11.51272 -10.87307 -10.79092 -10.73774 -10.64782 -9.82736 -9.34730 -8.28925 -6.45984 1.43369 1.47715 1.55947 1.78623 2.28746 2.48575 2.85947 3.05769 3.35573 3.77587 3.95226 4.00794 4.08178 4.35156 4.43710 4.47241 4.51653 4.66262 4.76365 4.97321 4.99052 5.01014 5.11061 5.22589 5.24139 5.32684 5.47306 5.48774 5.68887 5.84862 5.99259 6.32051 6.65246 6.94231 7.23657 7.52095 8.83208 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.077132 B = 0.003756 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.928290 B = 7452.278413 C = 7705.379904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.161 4.161 6 H 0.096 0.904 7 C 0.098 3.902 8 N -0.691 5.691 9 C 0.057 3.943 10 C 0.491 3.509 11 O -0.594 6.594 12 N -0.709 5.709 13 C 0.267 3.733 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.986 3.014 19 H -0.286 1.286 20 H -0.262 1.262 21 H -0.261 1.261 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.344 0.656 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.409 0.591 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 15.182 11.502 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 H 0.127 0.873 4 C -0.212 4.212 5 C -0.180 4.180 6 H 0.114 0.886 7 C -0.030 4.030 8 N -0.324 5.324 9 C -0.075 4.075 10 C 0.278 3.722 11 O -0.475 6.475 12 N -0.359 5.359 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.212 1.212 20 H -0.186 1.186 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.163 0.837 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.245 0.755 33 H 0.003 0.997 34 H 0.004 0.996 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.977 14.791 11.968 21.484 hybrid contribution -0.337 -0.349 -1.293 1.381 sum -10.314 14.442 10.675 20.710 Atomic orbital electron populations 1.21377 0.91925 1.02523 1.02223 1.22503 0.96128 0.94208 1.03424 0.87285 1.23204 1.02721 1.01684 0.93568 1.22289 1.01106 0.99819 0.94757 0.88626 1.21511 0.93415 0.91700 0.96423 1.60097 1.23614 1.17793 1.30901 1.21754 0.93924 0.94028 0.97809 1.21468 0.89317 0.81947 0.79419 1.90638 1.18064 1.73640 1.65116 1.46178 1.11448 1.30062 1.48249 1.18516 0.89990 0.87795 0.89335 1.21610 0.94533 1.13257 1.30144 0.89677 1.26102 0.96269 1.00269 0.97085 1.70142 1.10766 1.36149 1.40006 0.85183 0.77919 0.77585 0.78387 1.21151 1.18603 1.18560 0.92308 0.91196 0.91936 0.88492 0.88857 0.93544 0.90251 0.83693 0.89631 0.86144 0.75519 0.99714 0.99555 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.20 71.98 0.66 -0.83 16 2 C -0.14 -2.15 6.41 -10.77 -0.07 -2.22 16 3 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.17 -2.99 9.83 30.62 0.30 -2.69 16 5 C -0.16 -3.08 5.95 -10.80 -0.06 -3.15 16 6 H 0.10 2.03 8.13 -2.38 -0.02 2.01 16 7 C 0.10 1.93 5.05 86.30 0.44 2.36 16 8 N -0.69 -18.83 6.13 -517.94 -3.17 -22.00 16 9 C 0.06 1.52 6.17 85.56 0.53 2.04 16 10 C 0.49 19.87 7.87 87.66 0.69 20.56 16 11 O -0.59 -30.23 16.20 -3.02 -0.05 -30.28 16 12 N -0.71 -30.06 5.55 -466.80 -2.59 -32.65 16 13 C 0.27 14.86 5.43 85.63 0.46 15.32 16 14 C -0.56 -30.53 9.28 25.60 0.24 -30.29 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 18 Si 0.99 42.35 29.54 68.60 2.03 44.38 16 19 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 22 H 0.06 0.70 7.90 -2.39 -0.02 0.68 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.73 7.84 -2.39 -0.02 0.71 16 25 H 0.10 1.60 7.94 -2.39 -0.02 1.58 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 0.80 7.77 -2.38 -0.02 0.78 16 28 H 0.08 1.46 7.88 -2.39 -0.02 1.44 16 29 H 0.34 10.04 8.42 -89.70 -0.76 9.29 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.41 14.02 8.32 -92.70 -0.77 13.25 16 33 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 34 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 35 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -71.67 299.74 -0.30 -71.98 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.45 Total: 23.41 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.65 Total: 1.70 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -5.48 Total: -111.19 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.28 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -71.67 -0.30 -71.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166964152.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.381 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds