Wall clock time and date at job start Mon Mar 30 2020 04:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.57355 * 2 1 4 4 C 1.53125 * 109.52203 * 239.85172 * 2 1 3 5 5 C 1.53035 * 109.27580 * 182.44222 * 4 2 1 6 6 N 1.46840 * 109.52994 * 59.17458 * 5 4 2 7 7 C 1.46854 * 111.23238 * 298.28004 * 6 5 4 8 8 H 1.09000 * 109.42692 * 301.68444 * 7 6 5 9 9 C 1.50699 * 109.49644 * 181.71620 * 7 6 5 10 10 O 1.21281 * 120.00038 * 339.92097 * 9 7 6 11 11 N 1.34772 * 120.00044 * 159.92666 * 9 7 6 12 12 C 1.46495 * 120.00097 * 179.97438 * 11 9 7 13 13 C 1.50705 * 109.47198 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99663 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00153 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00029 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46802 * 59.99757 * 17 15 13 19 19 H 1.48494 * 109.47190 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46876 * 300.00209 * 17 15 13 21 21 C 1.53037 * 109.52285 * 61.67711 * 7 6 5 22 22 H 1.09000 * 109.46899 * 299.83351 * 1 2 3 23 23 H 1.09000 * 109.47382 * 59.83233 * 1 2 3 24 24 H 1.08998 * 109.47189 * 179.83701 * 1 2 3 25 25 H 1.09005 * 109.49488 * 302.37599 * 4 2 1 26 26 H 1.08998 * 109.50470 * 62.49679 * 4 2 1 27 27 H 1.09001 * 109.46056 * 179.19389 * 5 4 2 28 28 H 1.09005 * 109.46120 * 299.15195 * 5 4 2 29 29 H 1.00891 * 111.00536 * 174.15753 * 6 5 4 30 30 H 0.97005 * 120.00102 * 359.97438 * 11 9 7 31 31 H 1.08995 * 109.47484 * 300.00028 * 12 11 9 32 32 H 1.09003 * 109.47419 * 60.00368 * 12 11 9 33 33 H 0.96994 * 119.99976 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.50283 * 180.92217 * 21 7 6 35 35 H 1.09003 * 109.50113 * 60.84405 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0417 -0.7248 -1.2480 5 6 3.5708 -0.7750 -1.2118 6 7 4.0103 -1.4788 -0.0003 7 6 3.5708 -0.7761 1.2120 8 1 3.9680 0.2390 1.2068 9 6 4.0774 -1.5070 2.4286 10 8 4.4110 -2.6698 2.3423 11 7 4.1598 -0.8685 3.6126 12 6 4.6518 -1.5792 4.7954 13 6 4.6458 -0.6475 5.9799 14 1 4.3089 0.3720 5.8633 15 6 5.0696 -1.0968 7.2126 16 7 5.4795 -2.3384 7.3547 17 14 5.0616 0.0579 8.6810 18 1 3.6768 0.5336 8.9290 19 1 5.5592 -0.6627 9.8802 20 1 5.9416 1.2207 8.4010 21 6 2.0417 -0.7251 1.2477 22 1 -0.3633 0.5113 0.8915 23 1 -0.3634 0.5164 -0.8885 24 1 -0.3633 -1.0276 -0.0029 25 1 1.6447 -1.7398 -1.2676 26 1 1.7161 -0.1887 -2.1394 27 1 3.9378 -1.3030 -2.0919 28 1 3.9674 0.2403 -1.2061 29 1 5.0108 -1.6086 -0.0003 30 1 3.8933 0.0617 3.6816 31 1 4.0061 -2.4329 5.0010 32 1 5.6683 -1.9280 4.6131 33 1 5.7779 -2.6543 8.2218 34 1 1.7162 -0.1892 2.1393 35 1 1.6442 -1.7399 1.2676 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167388403.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:37 Heat of formation + Delta-G solvation = -83.263052 kcal Electronic energy + Delta-G solvation = -15752.470650 eV Core-core repulsion = 13169.176454 eV Total energy + Delta-G solvation = -2583.294196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04452 -38.97169 -36.15899 -34.44961 -34.37824 -32.18199 -29.32216 -28.22460 -25.59803 -24.04795 -23.11036 -21.26462 -20.61723 -19.02420 -17.79760 -17.31887 -16.84936 -16.25281 -15.96234 -15.38924 -15.19178 -14.80398 -14.73852 -14.09338 -13.85813 -13.82182 -13.66549 -12.94853 -12.83637 -12.70194 -12.59076 -12.32993 -12.21726 -11.81395 -11.57229 -11.52361 -11.17573 -10.79916 -10.54683 -9.85141 -9.39560 -8.29489 -6.46747 1.42872 1.47160 1.55469 1.71626 2.27388 2.48133 3.05172 3.25057 3.74274 3.82127 3.91141 4.10110 4.21423 4.25923 4.55891 4.69175 4.72708 4.76627 4.89171 4.99364 5.07841 5.10054 5.21267 5.22365 5.24053 5.37517 5.46800 5.54441 5.66319 5.83374 6.01759 6.34120 6.63717 6.91049 7.22580 7.47556 8.82615 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043020 B = 0.005503 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.701297 B = 5086.712770 C = 5473.607138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.084 0.916 4 C -0.113 4.113 5 C 0.059 3.941 6 N -0.689 5.689 7 C 0.088 3.912 8 H 0.080 0.920 9 C 0.495 3.505 10 O -0.589 6.589 11 N -0.706 5.706 12 C 0.267 3.733 13 C -0.557 4.557 14 H 0.084 0.916 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.262 1.262 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.100 4.100 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.345 0.655 30 H 0.407 0.593 31 H -0.015 1.015 32 H -0.013 1.013 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 10.144 -15.516 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.150 4.150 5 C -0.069 4.069 6 N -0.323 5.323 7 C -0.025 4.025 8 H 0.097 0.903 9 C 0.281 3.719 10 O -0.469 6.469 11 N -0.356 5.356 12 C 0.144 3.856 13 C -0.595 4.595 14 H 0.102 0.898 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.139 4.139 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.164 0.836 30 H 0.243 0.757 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.135 8.760 -15.443 19.530 hybrid contribution 0.876 0.795 1.122 1.630 sum -7.259 9.555 -14.322 18.684 Atomic orbital electron populations 1.21783 0.93860 1.01823 1.02590 1.21174 0.96623 0.99369 0.93321 0.89796 1.21710 0.94260 1.00921 0.98135 1.22072 0.96576 0.96873 0.91418 1.59944 1.19484 1.51850 1.00987 1.21354 0.97973 0.95530 0.87664 0.90293 1.21381 0.77733 0.87225 0.85524 1.90636 1.51073 1.19108 1.86066 1.46209 1.64747 1.15800 1.08870 1.18534 0.92060 0.92237 0.82748 1.21583 1.45576 0.98620 0.93730 0.89775 1.26084 0.93864 0.97026 1.02582 1.70136 1.43282 1.17756 1.25823 0.85191 0.79249 0.78072 0.76607 1.18619 1.21074 1.18594 1.21629 0.90919 1.01300 1.00037 0.92379 0.90883 0.93371 0.92488 0.88969 0.89348 0.93782 0.83623 0.75743 0.99663 0.99516 0.92220 0.90519 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.61 16 2 C -0.09 -1.58 2.79 -10.71 -0.03 -1.61 16 3 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 4 C -0.11 -1.98 5.38 30.65 0.16 -1.81 16 5 C 0.06 1.14 6.55 86.33 0.57 1.70 16 6 N -0.69 -19.42 6.10 -495.56 -3.02 -22.44 16 7 C 0.09 2.59 2.83 44.19 0.13 2.72 16 8 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 9 C 0.49 20.78 6.99 87.66 0.61 21.39 16 10 O -0.59 -30.77 16.53 -3.03 -0.05 -30.82 16 11 N -0.71 -30.68 5.55 -466.80 -2.59 -33.27 16 12 C 0.27 14.98 5.43 85.64 0.46 15.45 16 13 C -0.56 -30.61 9.28 25.60 0.24 -30.37 16 14 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.23 5.46 84.66 0.46 0.69 16 16 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 17 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.10 -2.59 4.64 30.64 0.14 -2.45 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.35 9.96 8.74 -89.70 -0.78 9.17 16 30 H 0.41 14.59 8.32 -92.70 -0.77 13.81 16 31 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.81 289.68 -0.42 -72.23 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -0.48 Total: 22.28 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 3.41 Total: 4.10 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -5.33 Total: -112.19 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -71.81 -0.42 -72.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167388403.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.032 kcal (2) G-P(sol) polarization free energy of solvation -71.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds