Wall clock time and date at job start Mon Mar 30 2020 03:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.52687 * 2 1 4 4 C 1.53041 * 109.49773 * 239.92064 * 2 1 3 5 5 C 1.53042 * 109.53893 * 178.68593 * 4 2 1 6 6 H 1.08999 * 109.49556 * 181.31685 * 5 4 2 7 7 C 1.53004 * 109.49756 * 301.41144 * 5 4 2 8 8 C 1.53192 * 109.31298 * 61.36432 * 5 4 2 9 9 N 1.46918 * 108.77513 * 305.36649 * 8 5 4 10 10 C 1.34783 * 120.62929 * 233.58463 * 9 8 5 11 11 O 1.21587 * 120.00203 * 5.22231 * 10 9 8 12 12 N 1.34779 * 119.99875 * 185.21756 * 10 9 8 13 13 C 1.37190 * 119.99625 * 175.00546 * 12 10 9 14 14 H 1.08000 * 120.00292 * 0.02562 * 13 12 10 15 15 C 1.38879 * 119.99884 * 180.02562 * 13 12 10 16 16 N 1.31479 * 120.00071 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00429 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47527 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47164 * 59.99375 * 17 15 13 20 20 H 1.48507 * 109.47048 * 300.00213 * 17 15 13 21 21 C 1.46924 * 118.74195 * 53.85928 * 9 8 5 22 22 H 1.09003 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47267 * 300.07686 * 1 2 3 24 24 H 1.09004 * 109.47060 * 60.07682 * 1 2 3 25 25 H 1.09002 * 109.46113 * 58.66649 * 4 2 1 26 26 H 1.09004 * 109.46053 * 298.70205 * 4 2 1 27 27 H 1.09000 * 109.46953 * 179.83794 * 7 5 4 28 28 H 1.09000 * 109.47221 * 299.84434 * 7 5 4 29 29 H 1.09004 * 109.46499 * 59.83825 * 7 5 4 30 30 H 1.09004 * 109.58578 * 185.57930 * 8 5 4 31 31 H 1.08997 * 109.70162 * 65.22370 * 8 5 4 32 32 H 0.96999 * 119.99776 * 355.01396 * 12 10 9 33 33 H 0.97004 * 119.99602 * 0.02562 * 16 15 13 34 34 H 1.08999 * 109.58431 * 65.93040 * 21 9 8 35 35 H 1.08997 * 109.59088 * 186.35048 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2660 6 1 3.9333 -1.1897 -2.1671 7 6 4.0552 0.7562 -1.2493 8 6 4.1052 -1.4268 -0.0308 9 7 3.5045 -0.8293 1.1695 10 6 4.2811 -0.3866 2.1783 11 8 5.4913 -0.3921 2.0614 12 7 3.7160 0.0622 3.3166 13 6 4.5058 0.4164 4.3811 14 1 5.5802 0.3358 4.3067 15 6 3.9236 0.8784 5.5542 16 7 2.6156 0.9759 5.6449 17 14 4.9988 1.3612 7.0034 18 1 4.1408 1.8187 8.1257 19 1 5.9110 2.4608 6.5983 20 1 5.7997 0.1886 7.4380 21 6 2.0410 -0.7290 1.2520 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5150 0.8893 24 1 -0.3633 0.5127 -0.8907 25 1 1.6581 -0.2244 -2.1389 26 1 1.6966 -1.7573 -1.2353 27 1 5.1450 0.7756 -1.2589 28 1 3.6747 1.2764 -2.1283 29 1 3.6909 1.2503 -0.3485 30 1 5.1895 -1.3247 0.0137 31 1 3.8395 -2.4825 -0.0855 32 1 2.7511 0.1348 3.3832 33 1 2.0572 0.7248 4.8925 34 1 1.6084 -1.7283 1.2985 35 1 1.7629 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:12 Heat of formation + Delta-G solvation = -60.454559 kcal Electronic energy + Delta-G solvation = -16546.957182 eV Core-core repulsion = 13964.652036 eV Total energy + Delta-G solvation = -2582.305146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.43250 -39.08907 -36.49528 -34.55891 -34.20544 -32.72396 -28.11416 -27.56085 -27.00947 -25.67574 -22.59346 -21.60943 -20.09885 -19.73500 -18.99378 -17.11764 -16.48703 -15.99041 -15.92669 -15.55721 -15.13898 -15.00329 -14.93964 -14.36832 -13.74547 -13.44029 -13.06089 -12.89373 -12.80976 -12.62027 -12.51049 -11.97090 -11.90561 -11.85370 -11.74144 -11.54892 -11.39619 -11.20185 -10.81984 -10.14392 -9.44138 -8.87571 -6.00339 1.53483 1.58510 1.82183 2.01510 2.30160 2.53430 3.22544 3.40471 3.73802 3.80329 3.88912 4.01462 4.18851 4.37937 4.44694 4.60654 4.69301 4.71428 4.79589 4.85850 4.89498 5.01870 5.07353 5.12853 5.26232 5.29438 5.33654 5.46275 5.52043 5.78551 5.98489 6.19105 6.75250 6.86718 7.55736 8.03402 8.60305 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.036916 B = 0.007804 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.293293 B = 3587.015840 C = 4077.777760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 H 0.057 0.943 4 C -0.098 4.098 5 C -0.099 4.099 6 H 0.107 0.893 7 C -0.140 4.140 8 C 0.130 3.870 9 N -0.631 5.631 10 C 0.662 3.338 11 O -0.663 6.663 12 N -0.612 5.612 13 C -0.396 4.396 14 H 0.071 0.929 15 C -0.050 4.050 16 N -0.925 5.925 17 Si 1.137 2.863 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.272 1.272 21 C 0.115 3.885 22 H 0.069 0.931 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.381 0.619 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.167 -3.420 -13.785 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.076 0.924 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.125 0.875 7 C -0.197 4.197 8 C 0.007 3.993 9 N -0.369 5.369 10 C 0.364 3.636 11 O -0.548 6.548 12 N -0.258 5.258 13 C -0.525 4.525 14 H 0.089 0.911 15 C -0.246 4.246 16 N -0.566 5.566 17 Si 0.956 3.044 18 H -0.196 1.196 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.008 4.008 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.218 0.782 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.353 -2.859 -12.274 13.693 hybrid contribution -0.219 -0.411 -1.278 1.360 sum -5.572 -3.270 -13.552 15.014 Atomic orbital electron populations 1.21739 0.92635 1.02941 1.02375 1.21604 0.97076 0.99212 0.94575 0.92437 1.21568 0.93353 1.01493 0.97125 1.21527 0.96995 0.95901 0.97436 0.87492 1.21766 1.00000 0.96911 1.01038 1.21568 0.98088 0.96488 0.83142 1.47103 1.06140 1.65621 1.18084 1.16007 0.84971 0.81374 0.81237 1.90669 1.14634 1.66815 1.82731 1.41221 1.08524 1.64127 1.11911 1.20412 0.92467 1.45820 0.93819 0.91085 1.27824 0.98743 0.95524 1.02495 1.71004 1.04087 1.48061 1.33430 0.82598 0.72911 0.77155 0.71706 1.19620 1.19997 1.19769 1.21890 0.79127 1.01132 0.98689 0.91154 0.93272 0.90797 0.89604 0.90163 0.94470 0.90675 0.95357 0.92187 0.90513 0.78189 0.93656 0.90106 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.20 71.98 0.66 -1.93 16 2 C -0.11 -2.55 2.54 -10.57 -0.03 -2.57 16 3 H 0.06 1.64 6.33 -2.39 -0.02 1.63 16 4 C -0.10 -1.89 4.71 30.62 0.14 -1.75 16 5 C -0.10 -2.36 3.21 -10.71 -0.03 -2.39 16 6 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 7 C -0.14 -3.90 8.71 71.98 0.63 -3.27 16 8 C 0.13 4.16 5.83 86.36 0.50 4.67 16 9 N -0.63 -24.71 2.40 -836.08 -2.01 -26.72 16 10 C 0.66 34.74 8.25 179.05 1.48 36.22 16 11 O -0.66 -39.97 15.35 -3.99 -0.06 -40.03 16 12 N -0.61 -33.83 5.20 -320.70 -1.67 -35.50 16 13 C -0.40 -23.99 9.68 84.01 0.81 -23.18 16 14 H 0.07 4.59 7.17 -2.91 -0.02 4.57 16 15 C -0.05 -2.83 5.50 84.90 0.47 -2.36 16 16 N -0.93 -54.12 13.69 21.65 0.30 -53.82 16 17 Si 1.14 50.71 29.92 68.60 2.05 52.76 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 C 0.11 3.59 5.70 86.51 0.49 4.09 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.03 0.96 5.97 -2.38 -0.01 0.94 16 30 H 0.06 2.29 7.00 -2.38 -0.02 2.27 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.38 19.61 4.22 -92.71 -0.39 19.22 16 33 H 0.25 14.47 6.78 -92.71 -0.63 13.85 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.90 5.64 -2.39 -0.01 1.89 16 Total: -1.00 -74.01 275.72 4.56 -69.45 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.83 Total: 26.34 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.13 Total: 7.52 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -3.38 Total: -116.05 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -0.06 Total: -40.03 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -74.01 4.56 -69.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.997 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds