Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46850 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00467 * 2 1 3 5 5 C 1.52994 * 109.47252 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47395 * 59.99503 * 5 4 2 7 7 C 1.53002 * 109.47326 * 300.00451 * 6 5 4 8 8 C 1.52994 * 109.47252 * 59.99461 * 7 6 5 9 9 H 1.09002 * 109.47353 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47049 * 60.00542 * 8 7 6 11 11 C 1.34774 * 120.00244 * 84.99328 * 10 8 7 12 12 O 1.21579 * 120.00085 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99974 * 179.97438 * 11 10 8 14 14 C 1.37195 * 119.99853 * 180.02562 * 13 11 10 15 15 H 1.08005 * 120.00016 * 0.02562 * 14 13 11 16 16 C 1.38870 * 119.99966 * 180.02562 * 14 13 11 17 17 N 1.31480 * 120.00175 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47363 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47233 * 300.00205 * 18 16 14 21 21 H 1.48508 * 109.46883 * 60.00009 * 18 16 14 22 22 H 1.09002 * 109.47045 * 299.99736 * 1 2 3 23 23 H 1.09001 * 109.47239 * 59.99438 * 1 2 3 24 24 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46871 * 300.00079 * 4 2 1 26 26 H 1.08994 * 109.47303 * 59.99381 * 4 2 1 27 27 H 1.09002 * 109.47353 * 179.97438 * 5 4 2 28 28 H 1.09007 * 109.47100 * 299.99759 * 5 4 2 29 29 H 1.08998 * 109.47245 * 60.00460 * 6 5 4 30 30 H 1.09000 * 109.47170 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.46871 * 299.99563 * 7 6 5 32 32 H 1.09003 * 109.47421 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99919 * 265.00035 * 10 8 7 34 34 H 0.96996 * 119.99887 * 0.02562 * 13 11 10 35 35 H 0.97001 * 119.99566 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0794 -1.4434 0.0001 7 6 3.5695 -0.7222 1.2494 8 6 2.0395 -0.7216 1.2492 9 1 1.6762 -0.2074 2.1390 10 7 1.5507 -2.1027 1.2489 11 6 1.4216 -2.7721 2.4115 12 8 1.7105 -2.2297 3.4606 13 7 0.9714 -4.0424 2.4112 14 6 0.8395 -4.7237 3.5947 15 1 1.0961 -4.2419 4.5267 16 6 0.3761 -6.0328 3.5944 17 7 0.0642 -6.6196 2.4599 18 14 0.1959 -6.9602 5.2059 19 1 -0.3139 -8.3285 4.9353 20 1 1.5176 -7.0477 5.8772 21 1 -0.7599 -6.2415 6.0864 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.6765 -1.7489 -1.2494 26 1 1.6765 -0.2074 -2.1392 27 1 3.9332 -1.2359 -2.1389 28 1 3.9336 0.3058 -1.2488 29 1 3.7158 -2.4709 -0.0001 30 1 5.1694 -1.4434 0.0004 31 1 3.9332 0.3054 1.2497 32 1 3.9329 -1.2360 2.1394 33 1 1.3199 -2.5353 0.4119 34 1 0.7406 -4.4750 1.5743 35 1 0.1575 -6.1378 1.6232 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = -55.968791 kcal Electronic energy + Delta-G solvation = -16336.488077 eV Core-core repulsion = 13754.377449 eV Total energy + Delta-G solvation = -2582.110628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.76731 -37.75015 -34.27348 -32.99363 -32.28183 -30.95619 -29.28920 -26.13969 -24.30361 -22.42736 -21.27435 -20.60347 -18.67720 -17.70142 -17.66844 -15.32182 -15.17146 -14.75213 -14.12701 -14.05129 -13.63671 -13.46972 -13.29452 -13.08625 -12.63560 -12.01215 -11.78673 -11.56594 -11.41439 -11.07817 -10.90372 -10.80270 -10.44201 -10.17299 -10.12807 -9.84024 -9.71142 -9.47871 -8.81021 -8.25381 -7.86518 -6.57084 -3.71298 3.41687 3.42911 3.62297 3.87751 4.36608 4.48693 4.73939 4.79562 4.86789 5.18470 5.30543 5.44701 5.48477 5.53106 5.60681 5.65731 5.72483 5.76220 5.88970 5.94096 6.00176 6.12689 6.16586 6.29103 6.38820 6.42688 6.52174 6.58440 7.38803 7.55003 8.20658 8.31989 8.90934 9.03873 9.69844 10.12862 10.87280 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.006569 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.273289 B = 4261.520494 C = 4310.001962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.131 4.131 8 C 0.177 3.823 9 H 0.081 0.919 10 N -0.752 5.752 11 C 0.663 3.337 12 O -0.622 6.622 13 N -0.602 5.602 14 C -0.367 4.367 15 H 0.096 0.904 16 C -0.016 4.016 17 N -0.915 5.915 18 Si 1.092 2.908 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.286 1.286 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.383 0.617 34 H 0.373 0.627 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 10.990 -8.993 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.170 4.170 8 C 0.070 3.930 9 H 0.099 0.901 10 N -0.410 5.410 11 C 0.363 3.637 12 O -0.505 6.505 13 N -0.245 5.245 14 C -0.497 4.497 15 H 0.114 0.886 16 C -0.217 4.217 17 N -0.555 5.555 18 Si 0.919 3.081 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.213 1.213 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.217 0.783 34 H 0.205 0.795 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.594 9.976 -7.318 12.884 hybrid contribution 0.277 1.067 -1.571 1.919 sum 3.871 11.043 -8.889 14.695 Atomic orbital electron populations 1.21795 0.94895 1.02339 1.01244 1.21412 0.95980 0.99517 0.94767 0.90380 1.21587 0.95660 1.00709 0.97260 1.21532 0.95532 1.00491 0.97928 1.21473 0.99626 1.00063 0.94309 1.21946 0.96408 1.00163 0.98470 1.20520 0.92595 0.82429 0.97446 0.90086 1.45083 1.74011 1.14281 1.07603 1.15816 0.82158 0.82202 0.83475 1.90725 1.60220 1.68897 1.30629 1.41066 1.63666 1.10447 1.09292 1.20366 1.45148 0.97804 0.86347 0.88621 1.26359 0.95836 0.94197 1.05300 1.70920 1.47621 1.39158 0.97836 0.83118 0.76736 0.75765 0.72501 1.20591 1.21262 1.21260 0.92614 0.93042 0.92306 0.92009 0.92081 0.92362 0.92235 0.91744 0.92586 0.92021 0.91201 0.78349 0.79455 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.03 37.16 0.34 -1.42 16 2 C -0.10 -1.17 2.51 -90.62 -0.23 -1.40 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.24 5.03 -26.73 -0.13 -1.37 16 5 C -0.12 -1.25 5.92 -26.74 -0.16 -1.41 16 6 C -0.12 -1.52 5.77 -26.73 -0.15 -1.68 16 7 C -0.13 -1.94 5.60 -26.73 -0.15 -2.09 16 8 C 0.18 2.78 2.23 -67.93 -0.15 2.63 16 9 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 10 N -0.75 -13.76 3.54 -58.68 -0.21 -13.97 16 11 C 0.66 16.25 8.48 -86.92 -0.74 15.51 16 12 O -0.62 -17.62 15.58 5.30 0.08 -17.54 16 13 N -0.60 -15.73 5.29 -15.34 -0.08 -15.82 16 14 C -0.37 -10.69 9.68 -14.92 -0.14 -10.84 16 15 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 16 C -0.02 -0.46 5.50 -17.47 -0.10 -0.56 16 17 N -0.91 -26.57 13.69 55.49 0.76 -25.81 16 18 Si 1.09 25.22 29.92 -169.99 -5.09 20.14 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.78 7.44 -51.93 -0.39 0.40 16 25 H 0.06 0.71 6.51 -51.93 -0.34 0.37 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.95 7.60 -51.93 -0.39 0.56 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.38 6.21 6.66 -40.82 -0.27 5.93 16 34 H 0.37 9.06 6.74 -40.82 -0.28 8.79 16 35 H 0.26 7.23 6.77 -40.82 -0.28 6.95 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -32.76 278.85 -7.26 -40.02 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.31 Total: 11.39 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.62 Total: -2.62 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.47 Total: -55.60 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.08 Total: -17.54 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -5.09 Total: 20.14 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.76 -7.26 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.946 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds