Wall clock time and date at job start Mon Mar 30 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46850 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00467 * 2 1 3 5 5 C 1.52994 * 109.47252 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47395 * 59.99503 * 5 4 2 7 7 C 1.53002 * 109.47326 * 300.00451 * 6 5 4 8 8 C 1.52994 * 109.47252 * 59.99461 * 7 6 5 9 9 H 1.09002 * 109.47353 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.47049 * 60.00542 * 8 7 6 11 11 C 1.34774 * 120.00244 * 84.99328 * 10 8 7 12 12 O 1.21579 * 120.00085 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99974 * 179.97438 * 11 10 8 14 14 C 1.37195 * 119.99853 * 180.02562 * 13 11 10 15 15 H 1.08005 * 120.00016 * 0.02562 * 14 13 11 16 16 C 1.38870 * 119.99966 * 180.02562 * 14 13 11 17 17 N 1.31480 * 120.00175 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00194 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47363 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47233 * 300.00205 * 18 16 14 21 21 H 1.48508 * 109.46883 * 60.00009 * 18 16 14 22 22 H 1.09002 * 109.47045 * 299.99736 * 1 2 3 23 23 H 1.09001 * 109.47239 * 59.99438 * 1 2 3 24 24 H 1.08998 * 109.47374 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46871 * 300.00079 * 4 2 1 26 26 H 1.08994 * 109.47303 * 59.99381 * 4 2 1 27 27 H 1.09002 * 109.47353 * 179.97438 * 5 4 2 28 28 H 1.09007 * 109.47100 * 299.99759 * 5 4 2 29 29 H 1.08998 * 109.47245 * 60.00460 * 6 5 4 30 30 H 1.09000 * 109.47170 * 180.02562 * 6 5 4 31 31 H 1.09007 * 109.46871 * 299.99563 * 7 6 5 32 32 H 1.09003 * 109.47421 * 180.02562 * 7 6 5 33 33 H 0.97005 * 119.99919 * 265.00035 * 10 8 7 34 34 H 0.96996 * 119.99887 * 0.02562 * 13 11 10 35 35 H 0.97001 * 119.99566 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2491 6 6 4.0794 -1.4434 0.0001 7 6 3.5695 -0.7222 1.2494 8 6 2.0395 -0.7216 1.2492 9 1 1.6762 -0.2074 2.1390 10 7 1.5507 -2.1027 1.2489 11 6 1.4216 -2.7721 2.4115 12 8 1.7105 -2.2297 3.4606 13 7 0.9714 -4.0424 2.4112 14 6 0.8395 -4.7237 3.5947 15 1 1.0961 -4.2419 4.5267 16 6 0.3761 -6.0328 3.5944 17 7 0.0642 -6.6196 2.4599 18 14 0.1959 -6.9602 5.2059 19 1 -0.3139 -8.3285 4.9353 20 1 1.5176 -7.0477 5.8772 21 1 -0.7599 -6.2415 6.0864 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.6765 -1.7489 -1.2494 26 1 1.6765 -0.2074 -2.1392 27 1 3.9332 -1.2359 -2.1389 28 1 3.9336 0.3058 -1.2488 29 1 3.7158 -2.4709 -0.0001 30 1 5.1694 -1.4434 0.0004 31 1 3.9332 0.3054 1.2497 32 1 3.9329 -1.2360 2.1394 33 1 1.3199 -2.5353 0.4119 34 1 0.7406 -4.4750 1.5743 35 1 0.1575 -6.1378 1.6232 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264260.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:24 Heat of formation + Delta-G solvation = -77.683096 kcal Electronic energy + Delta-G solvation = -16337.429680 eV Core-core repulsion = 13754.377449 eV Total energy + Delta-G solvation = -2583.052231 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.28720 -39.38090 -36.36718 -34.49933 -33.45881 -32.92469 -30.61561 -27.29745 -26.34588 -23.59828 -22.49710 -22.13907 -20.18237 -19.67559 -19.48475 -17.00286 -16.45648 -16.14709 -15.89001 -15.49353 -15.36818 -15.07527 -14.71690 -14.27479 -13.74753 -13.30755 -13.14303 -12.85781 -12.82342 -12.59900 -12.40965 -11.90257 -11.85172 -11.81142 -11.55485 -11.41084 -11.22434 -10.91084 -10.90027 -10.15409 -9.76211 -8.84684 -5.97904 1.54715 1.59851 1.83319 2.18078 2.37659 2.59296 3.26531 3.67017 3.80648 3.83616 3.86473 4.18144 4.24046 4.47632 4.53546 4.57108 4.68107 4.71618 4.83215 4.94917 5.06738 5.12002 5.16223 5.27980 5.29337 5.37569 5.44891 5.48773 5.56102 5.83793 6.00118 6.28376 6.78197 7.00546 7.63954 8.09865 8.63919 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.006569 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.273289 B = 4261.520494 C = 4310.001962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.128 4.128 8 C 0.169 3.831 9 H 0.051 0.949 10 N -0.729 5.729 11 C 0.663 3.337 12 O -0.664 6.664 13 N -0.612 5.612 14 C -0.394 4.394 15 H 0.071 0.929 16 C -0.050 4.050 17 N -0.928 5.928 18 Si 1.136 2.864 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.397 0.603 34 H 0.380 0.620 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.014 11.866 -10.674 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.121 0.879 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.166 4.166 8 C 0.063 3.937 9 H 0.070 0.930 10 N -0.387 5.387 11 C 0.363 3.637 12 O -0.549 6.549 13 N -0.256 5.256 14 C -0.523 4.523 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.569 5.569 18 Si 0.956 3.044 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.199 1.199 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.232 0.768 34 H 0.214 0.786 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.807 10.888 -9.073 14.675 hybrid contribution 0.240 0.880 -1.089 1.421 sum 4.047 11.768 -10.162 16.066 Atomic orbital electron populations 1.21801 0.94955 1.01427 1.02078 1.21387 0.95834 1.00279 0.93068 0.87890 1.21611 0.95859 1.00236 0.97365 1.21507 0.95196 1.01344 0.96735 1.21461 1.00286 0.98808 0.94724 1.21899 0.95449 1.01547 0.97752 1.20806 0.93474 0.80696 0.98695 0.93037 1.44919 1.72546 1.15025 1.06184 1.16092 0.81270 0.81849 0.84471 1.90684 1.61745 1.69716 1.32798 1.41010 1.64596 1.11075 1.08910 1.20376 1.46641 0.98700 0.86627 0.91099 1.27761 0.94521 0.94587 1.07722 1.70994 1.48260 1.39395 0.98207 0.82603 0.77577 0.74961 0.69280 1.19771 1.19970 1.19924 0.93787 0.90237 0.94088 0.93064 0.89357 0.90869 0.90312 0.94100 0.91574 0.89273 0.95464 0.76761 0.78598 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.03 71.98 0.65 -2.57 16 2 C -0.09 -1.86 2.51 -10.80 -0.03 -1.89 16 3 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.11 -2.04 5.03 30.59 0.15 -1.89 16 5 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 6 C -0.12 -2.82 5.77 30.59 0.18 -2.64 16 7 C -0.13 -3.72 5.60 30.59 0.17 -3.55 16 8 C 0.17 5.28 2.23 44.99 0.10 5.38 16 9 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 10 N -0.73 -27.13 3.54 -457.83 -1.62 -28.76 16 11 C 0.66 33.65 8.48 179.05 1.52 35.17 16 12 O -0.66 -39.30 15.58 -3.97 -0.06 -39.36 16 13 N -0.61 -32.97 5.29 -320.71 -1.70 -34.66 16 14 C -0.39 -23.58 9.68 84.01 0.81 -22.77 16 15 H 0.07 4.54 7.16 -2.91 -0.02 4.52 16 16 C -0.05 -2.81 5.50 84.90 0.47 -2.34 16 17 N -0.93 -53.96 13.69 21.65 0.30 -53.66 16 18 Si 1.14 50.56 29.92 68.60 2.05 52.62 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 1.04 7.44 -2.39 -0.02 1.02 16 25 H 0.05 1.04 6.51 -2.38 -0.02 1.03 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.04 1.18 7.60 -2.39 -0.02 1.16 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.40 12.82 6.66 -92.70 -0.62 12.21 16 34 H 0.38 18.95 6.74 -92.71 -0.63 18.33 16 35 H 0.25 14.42 6.77 -92.71 -0.63 13.80 16 Total: -1.00 -72.60 278.85 3.16 -69.44 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.02 Total: 33.25 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 4.21 Total: 1.14 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.02 Total: -117.08 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.06 Total: -39.36 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.05 Total: 52.62 kcal Total: -72.60 3.16 -69.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264260.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds