Wall clock time and date at job start Mon Mar 30 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53006 * 109.46711 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47445 * 59.99695 * 5 4 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 4 8 8 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 9 9 H 1.08992 * 109.47399 * 59.99823 * 8 2 1 10 10 N 1.46500 * 109.47023 * 299.99760 * 8 2 1 11 11 C 1.34777 * 120.00075 * 155.00453 * 10 8 2 12 12 O 1.21587 * 119.99681 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00044 * 180.02562 * 11 10 8 14 14 C 1.37197 * 119.99959 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99674 * 359.97438 * 14 13 11 16 16 C 1.38878 * 119.99955 * 180.02562 * 14 13 11 17 17 N 1.31476 * 120.00076 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99926 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47050 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47445 * 119.99693 * 18 16 14 21 21 H 1.48500 * 109.46799 * 240.00269 * 18 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47075 * 299.99262 * 4 2 1 26 26 H 1.08996 * 109.47407 * 60.00219 * 4 2 1 27 27 H 1.09001 * 109.46726 * 179.97438 * 5 4 2 28 28 H 1.09002 * 109.46589 * 299.99365 * 5 4 2 29 29 H 1.09002 * 109.47045 * 59.99942 * 6 5 4 30 30 H 1.09000 * 109.47140 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 33 33 H 0.97006 * 120.00223 * 335.00118 * 10 8 2 34 34 H 0.96997 * 120.00305 * 359.97438 * 13 11 10 35 35 H 0.96997 * 119.99840 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0795 -1.4433 0.0002 7 6 3.5695 -0.7221 1.2495 8 6 2.0400 -0.7213 1.2492 9 1 1.6766 -1.7489 1.2492 10 7 1.5517 -0.0307 2.4454 11 6 1.4230 -0.7031 3.6064 12 8 1.7118 -1.8829 3.6608 13 7 0.9733 -0.0679 4.7067 14 6 0.8418 -0.7524 5.8884 15 1 1.0983 -1.8005 5.9367 16 6 0.3779 -0.0980 7.0221 17 7 0.0652 1.1776 6.9631 18 14 0.1996 -1.0299 8.6312 19 1 0.6146 -2.4421 8.4340 20 1 1.0594 -0.4007 9.6656 21 1 -1.2176 -0.9881 9.0729 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 1.6766 -1.7489 -1.2493 26 1 1.6766 -0.2074 -2.1393 27 1 3.9332 -1.2360 -2.1388 28 1 3.9336 0.3058 -1.2488 29 1 3.7158 -2.4709 0.0000 30 1 5.1695 -1.4441 0.0002 31 1 3.9329 -1.2360 2.1394 32 1 3.9332 0.3055 1.2497 33 1 1.3210 0.9105 2.4019 34 1 0.7426 0.8733 4.6632 35 1 -0.2592 1.6346 7.7548 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:32 Heat of formation + Delta-G solvation = -60.506237 kcal Electronic energy + Delta-G solvation = -16047.103708 eV Core-core repulsion = 13464.796322 eV Total energy + Delta-G solvation = -2582.307386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45526 -37.72999 -34.01761 -33.29597 -32.21121 -31.07356 -28.98348 -26.12621 -24.58761 -22.27809 -21.10047 -19.83944 -19.57607 -17.82404 -16.95257 -15.54918 -14.61212 -14.54742 -14.24213 -14.01130 -13.87385 -13.46824 -13.07981 -12.71667 -12.57092 -12.21484 -11.77147 -11.42440 -11.39669 -11.07973 -10.99249 -10.76481 -10.41914 -10.30400 -10.25364 -10.08951 -9.92029 -9.45760 -8.75407 -8.17512 -7.80376 -6.24939 -3.66371 3.26898 3.34391 3.41341 3.90743 4.41012 4.42496 4.76317 4.83371 4.99173 5.19624 5.32097 5.46410 5.52177 5.60234 5.63149 5.67573 5.77849 5.84750 5.99286 6.01114 6.11662 6.14067 6.25193 6.29335 6.33036 6.43726 6.60183 6.69139 7.46708 7.66941 7.79280 8.52196 8.89019 9.33759 9.78924 10.28361 10.95036 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051425 B = 0.005928 C = 0.005613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.351437 B = 4722.069275 C = 4987.248991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.131 4.131 8 C 0.178 3.822 9 H 0.081 0.919 10 N -0.757 5.757 11 C 0.659 3.341 12 O -0.627 6.627 13 N -0.591 5.591 14 C -0.281 4.281 15 H 0.101 0.899 16 C 0.015 3.985 17 N -0.914 5.914 18 Si 0.928 3.072 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.385 0.615 34 H 0.390 0.610 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 0.723 -14.837 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.170 4.170 8 C 0.071 3.929 9 H 0.099 0.901 10 N -0.413 5.413 11 C 0.360 3.640 12 O -0.511 6.511 13 N -0.232 5.232 14 C -0.411 4.411 15 H 0.119 0.881 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.756 3.244 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.223 0.777 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.788 -0.242 -14.581 15.067 hybrid contribution -0.341 0.664 0.875 1.150 sum 3.447 0.422 -13.706 14.139 Atomic orbital electron populations 1.21797 0.94871 1.02098 1.01493 1.21399 0.96001 0.99746 0.94574 0.91120 1.21548 0.95473 1.00836 0.96938 1.21561 0.95678 1.00658 0.97812 1.21499 0.99938 0.99662 0.94349 1.21971 0.96493 1.00452 0.98078 1.20530 0.92469 0.97027 0.82844 0.90116 1.45064 1.74163 1.12866 1.09213 1.15932 0.82242 0.85390 0.80457 1.90723 1.60588 1.14993 1.84756 1.41014 1.62507 1.12295 1.07403 1.19607 1.40412 0.95943 0.85104 0.88115 1.25141 0.98074 0.95893 0.99393 1.69649 1.46683 1.08975 1.30356 0.85812 0.77628 0.79485 0.81452 1.19434 1.20997 1.21001 0.92681 0.92129 0.93121 0.91776 0.91984 0.92300 0.92138 0.91901 0.92259 0.91162 0.92419 0.78291 0.77704 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.04 37.16 0.34 -1.45 16 2 C -0.10 -1.20 2.30 -90.62 -0.21 -1.41 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 5 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 6 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 7 C -0.13 -1.97 5.49 -26.75 -0.15 -2.12 16 8 C 0.18 2.85 1.90 -67.95 -0.13 2.72 16 9 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 10 N -0.76 -14.13 4.39 -58.70 -0.26 -14.39 16 11 C 0.66 16.23 8.48 -86.92 -0.74 15.50 16 12 O -0.63 -17.72 15.58 5.29 0.08 -17.63 16 13 N -0.59 -15.56 5.29 -15.34 -0.08 -15.64 16 14 C -0.28 -8.10 9.68 -14.91 -0.14 -8.24 16 15 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 16 C 0.01 0.41 5.50 -17.47 -0.10 0.31 16 17 N -0.91 -25.79 13.05 55.49 0.72 -25.06 16 18 Si 0.93 21.81 29.55 -169.99 -5.02 16.79 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.81 7.45 -51.93 -0.39 0.43 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.38 6.29 8.40 -40.82 -0.34 5.95 16 34 H 0.39 9.84 7.91 -40.82 -0.32 9.51 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 284.99 15.07 4.29 4.29 Total: -1.00 -31.59 284.99 -7.45 -39.04 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.61 Total: 11.52 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.58 Total: 1.08 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.39 Total: -55.09 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.08 Total: -17.63 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.59 -7.45 -39.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.471 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds