Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 7 7 C 1.46016 * 118.52982 * 119.73765 * 6 3 2 8 8 C 1.53173 * 109.93843 * 161.66344 * 7 6 3 9 9 N 1.47191 * 108.57365 * 50.66958 * 8 7 6 10 10 C 1.46901 * 110.17008 * 290.82204 * 9 8 7 11 11 H 1.08993 * 109.30638 * 290.19604 * 10 9 8 12 12 C 1.50701 * 109.38478 * 170.45024 * 10 9 8 13 13 H 1.08000 * 120.00300 * 239.48366 * 12 10 9 14 14 C 1.37875 * 119.99630 * 59.48994 * 12 10 9 15 15 N 1.31519 * 120.00235 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00055 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47092 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47431 * 119.99545 * 16 14 12 19 19 H 1.48504 * 109.46815 * 239.99806 * 16 14 12 20 20 C 1.33709 * 118.54155 * 300.00301 * 6 3 2 21 21 O 1.21284 * 118.62565 * 1.68476 * 20 6 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.09001 * 109.47018 * 59.99856 * 5 3 2 28 28 H 1.09002 * 109.47069 * 179.97438 * 5 3 2 29 29 H 1.08994 * 109.47518 * 299.99758 * 5 3 2 30 30 H 1.09002 * 109.37453 * 282.00768 * 7 6 3 31 31 H 1.08997 * 109.37691 * 41.66427 * 7 6 3 32 32 H 1.08994 * 109.81660 * 290.85460 * 8 7 6 33 33 H 1.09011 * 109.65332 * 170.37950 * 8 7 6 34 34 H 1.00895 * 111.00074 * 167.45852 * 9 8 7 35 35 H 0.97001 * 119.99901 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 1.6525 2.0974 -1.2519 7 6 0.8006 3.2814 -1.1850 8 6 0.8857 4.0612 -2.5006 9 7 0.6520 3.1280 -3.6146 10 6 1.7810 2.1965 -3.7405 11 1 2.6559 2.7374 -4.1009 12 6 1.4255 1.1095 -4.7219 13 1 1.4246 0.0765 -4.4066 14 6 1.1016 1.4337 -6.0222 15 7 1.1023 2.6916 -6.4061 16 14 0.6617 0.0862 -7.2389 17 1 0.7352 -1.2341 -6.5633 18 1 -0.7165 0.3074 -7.7456 19 1 1.6173 0.1142 -8.3753 20 6 2.0901 1.5811 -2.4050 21 8 2.7647 0.5737 -2.3717 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.9994 0.9053 -0.7161 28 1 3.9282 2.4720 0.1253 29 1 3.8532 0.9571 1.0571 30 1 -0.2305 2.9755 -1.0080 31 1 1.1324 3.9198 -0.3661 32 1 1.8739 4.5100 -2.6009 33 1 0.1262 4.8430 -2.5132 34 1 0.4969 3.6269 -4.4778 35 1 0.8741 2.9197 -7.3208 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219486309.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -55.018747 kcal Electronic energy + Delta-G solvation = -16866.102319 eV Core-core repulsion = 14284.032888 eV Total energy + Delta-G solvation = -2582.069431 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46738 -37.42584 -37.19031 -34.76797 -32.95461 -30.90627 -30.46021 -27.78344 -25.48643 -24.21860 -23.95494 -21.76760 -19.13255 -18.74289 -17.91459 -17.05496 -16.58641 -16.36343 -15.58011 -15.42288 -14.93788 -14.62194 -14.34777 -14.32722 -14.00624 -13.36914 -13.07933 -13.03119 -12.77110 -12.74206 -12.62387 -12.46949 -12.15006 -11.94718 -11.77098 -11.56578 -11.38378 -10.73121 -10.11924 -9.44691 -9.00736 -8.26221 -6.33234 1.38812 1.40156 1.53400 1.92118 2.25389 2.43818 3.02375 3.74991 3.85722 4.06531 4.17989 4.20023 4.29076 4.47014 4.53351 4.60348 4.69525 4.77863 4.82731 4.89720 4.92681 5.00817 5.11529 5.15245 5.31502 5.41056 5.43663 5.69071 5.78188 5.96020 6.40763 6.72843 6.77615 6.91848 7.34905 7.53405 8.85233 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031035 B = 0.009625 C = 0.008587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.989768 B = 2908.418783 C = 3259.789174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.139 3.861 4 H 0.117 0.883 5 C -0.163 4.163 6 N -0.602 5.602 7 C 0.123 3.877 8 C 0.027 3.973 9 N -0.681 5.681 10 C 0.204 3.796 11 H -0.011 1.011 12 C -0.513 4.513 13 H 0.043 0.957 14 C 0.028 3.972 15 N -0.915 5.915 16 Si 0.966 3.034 17 H -0.280 1.280 18 H -0.270 1.270 19 H -0.275 1.275 20 C 0.527 3.473 21 O -0.582 6.582 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.018 0.982 33 H 0.108 0.892 34 H 0.356 0.644 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 2.977 13.077 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.037 3.963 4 H 0.135 0.865 5 C -0.221 4.221 6 N -0.335 5.335 7 C 0.000 4.000 8 C -0.103 4.103 9 N -0.317 5.317 10 C 0.093 3.907 11 H 0.006 0.994 12 C -0.552 4.552 13 H 0.061 0.939 14 C -0.172 4.172 15 N -0.555 5.555 16 Si 0.791 3.209 17 H -0.205 1.205 18 H -0.195 1.195 19 H -0.201 1.201 20 C 0.317 3.683 21 O -0.462 6.462 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.037 0.963 33 H 0.126 0.874 34 H 0.179 0.821 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.028 2.166 13.316 13.642 hybrid contribution 0.649 -0.007 -1.542 1.673 sum -1.378 2.159 11.773 12.049 Atomic orbital electron populations 1.21646 0.95222 1.01380 1.01410 1.21944 0.96626 0.96992 1.02563 1.21295 0.95340 0.93763 0.85945 0.86502 1.22133 0.95549 1.01833 1.02594 1.47667 1.50589 1.29697 1.05524 1.21737 0.94705 0.85543 0.97983 1.22480 1.00144 0.95372 0.92283 1.61205 1.41261 1.19736 1.09532 1.18955 0.89675 0.92595 0.89464 0.99410 1.20992 1.47283 0.92052 0.94910 0.93910 1.25624 0.94133 0.98104 0.99294 1.69728 1.49150 1.17640 1.18997 0.85393 0.78277 0.78929 0.78294 1.20487 1.19482 1.20085 1.20623 0.77820 0.83558 0.86303 1.90450 1.41458 1.26424 1.87878 0.92982 0.95226 0.90508 0.89502 0.93498 0.94052 0.92606 0.89557 0.91007 0.87558 0.96328 0.87419 0.82120 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.80 71.98 0.71 -3.30 16 2 C -0.14 -4.49 5.25 30.60 0.16 -4.33 16 3 C 0.14 4.10 2.63 44.99 0.12 4.22 16 4 H 0.12 2.50 7.84 -2.39 -0.02 2.48 16 5 C -0.16 -4.80 9.09 71.98 0.65 -4.15 16 6 N -0.60 -22.03 2.25 -800.85 -1.80 -23.83 16 7 C 0.12 3.59 6.50 86.53 0.56 4.15 16 8 C 0.03 0.93 6.64 86.31 0.57 1.51 16 9 N -0.68 -31.76 6.46 -499.07 -3.22 -34.98 16 10 C 0.20 10.99 2.61 43.29 0.11 11.10 16 11 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 12 C -0.51 -30.56 8.49 25.60 0.22 -30.34 16 13 H 0.04 2.71 7.39 -2.91 -0.02 2.69 16 14 C 0.03 1.61 5.38 84.65 0.46 2.06 16 15 N -0.92 -51.23 11.53 21.45 0.25 -50.98 16 16 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.53 25.63 6.52 87.69 0.57 26.20 16 21 O -0.58 -31.28 11.85 -3.04 -0.04 -31.32 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.03 1.02 7.75 -2.39 -0.02 1.01 16 24 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.95 5.81 -2.39 -0.01 1.93 16 27 H 0.04 1.57 6.05 -2.39 -0.01 1.56 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.19 8.09 -2.39 -0.02 2.17 16 32 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.36 17.81 6.92 -89.70 -0.62 17.19 16 35 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -68.19 277.21 1.79 -66.40 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.45 Total: 20.19 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.13 Total: 7.12 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -4.78 Total: -109.79 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.04 Total: -31.32 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -68.19 1.79 -66.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486309.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.382 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds