Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 H 1.09003 * 109.46716 * 304.99622 * 3 2 1 5 5 C 1.52994 * 109.47388 * 185.00252 * 3 2 1 6 6 N 1.46504 * 109.47397 * 64.99455 * 3 2 1 7 7 C 1.46004 * 118.53910 * 240.00077 * 6 3 2 8 8 C 1.52980 * 110.04185 * 161.83785 * 7 6 3 9 9 N 1.47184 * 108.72843 * 50.29623 * 8 7 6 10 10 C 1.46907 * 110.17562 * 290.99864 * 9 8 7 11 11 H 1.08996 * 109.38645 * 290.24946 * 10 9 8 12 12 C 1.50697 * 109.38978 * 170.45536 * 10 9 8 13 13 H 1.08004 * 120.00006 * 275.23232 * 12 10 9 14 14 C 1.37878 * 120.00013 * 95.22745 * 12 10 9 15 15 N 1.31517 * 119.99374 * 174.46757 * 14 12 10 16 16 Si 1.86793 * 120.00087 * 354.74139 * 14 12 10 17 17 H 1.48504 * 109.47027 * 94.62390 * 16 14 12 18 18 H 1.48502 * 109.47107 * 214.62422 * 16 14 12 19 19 H 1.48499 * 109.47157 * 334.62594 * 16 14 12 20 20 C 1.33711 * 118.53137 * 60.00282 * 6 3 2 21 21 O 1.21283 * 118.63049 * 1.68669 * 20 6 3 22 22 H 1.09002 * 109.47334 * 300.00324 * 1 2 3 23 23 H 1.09004 * 109.47201 * 60.00312 * 1 2 3 24 24 H 1.09003 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47462 * 239.99536 * 2 1 3 26 26 H 1.08998 * 109.46768 * 119.99616 * 2 1 3 27 27 H 1.09003 * 109.46678 * 299.99394 * 5 3 2 28 28 H 1.08997 * 109.47248 * 59.99035 * 5 3 2 29 29 H 1.08996 * 109.47560 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.37258 * 41.67060 * 7 6 3 31 31 H 1.08999 * 109.28431 * 281.95790 * 7 6 3 32 32 H 1.09005 * 109.59894 * 290.51981 * 8 7 6 33 33 H 1.09002 * 109.59424 * 170.06461 * 8 7 6 34 34 H 1.00903 * 111.00574 * 167.63292 * 9 8 7 35 35 H 0.96999 * 119.99395 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0976 1.2518 7 6 0.8055 3.2850 1.1845 8 6 0.1560 3.5435 2.5452 9 7 1.2019 3.5187 3.5804 10 6 1.7206 2.1541 3.7441 11 1 0.9556 1.5290 4.2046 12 6 2.9403 2.1852 4.6286 13 1 3.9104 2.3965 4.2035 14 6 2.8178 1.9439 5.9806 15 7 3.8927 1.8631 6.7341 16 14 1.1257 1.7241 6.7405 17 1 0.7959 0.2775 6.8046 18 1 1.1211 2.2940 8.1118 19 1 0.1148 2.4259 5.9093 20 6 2.0900 1.5813 2.4049 21 8 2.8156 0.6102 2.3686 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9994 0.9053 0.7161 28 1 3.8531 0.9569 -1.0571 29 1 3.9282 2.4719 -0.1253 30 1 0.0280 3.1326 0.4359 31 1 1.4134 4.1453 0.9046 32 1 -0.5813 2.7676 2.7518 33 1 -0.3292 4.5196 2.5391 34 1 0.8533 3.8804 4.4556 35 1 3.8066 1.6930 7.6851 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219486381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -28.722556 kcal Electronic energy + Delta-G solvation = -16876.725469 eV Core-core repulsion = 14295.796327 eV Total energy + Delta-G solvation = -2580.929143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96857 -35.97247 -35.67766 -32.88182 -31.73264 -29.78185 -29.06347 -26.17284 -23.92239 -22.90643 -22.22786 -20.47848 -17.61334 -17.05183 -16.57638 -15.59929 -15.12870 -14.87803 -14.09446 -13.86070 -13.44398 -13.28410 -13.11719 -12.75355 -12.60572 -12.14911 -11.94034 -11.74737 -11.35498 -11.18948 -10.99289 -10.74956 -10.66398 -10.56898 -10.41376 -9.96233 -9.50932 -8.68907 -8.47977 -8.02195 -7.62902 -6.15834 -4.16211 3.15956 3.21671 3.27565 3.59319 3.67600 4.28694 4.78302 4.99217 5.24655 5.29888 5.31962 5.40590 5.51496 5.61117 5.67651 5.82008 5.84420 5.93460 6.04207 6.12234 6.16401 6.17480 6.34901 6.37296 6.45663 6.61992 6.76044 7.13745 7.33581 7.80972 8.11478 8.24841 8.46842 8.95501 9.17562 9.43530 10.97060 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031802 B = 0.009978 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.223238 B = 2805.399590 C = 3023.937020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.145 4.145 3 C 0.147 3.853 4 H 0.073 0.927 5 C -0.170 4.170 6 N -0.612 5.612 7 C 0.128 3.872 8 C 0.029 3.971 9 N -0.678 5.678 10 C 0.172 3.828 11 H 0.030 0.970 12 C -0.476 4.476 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.884 5.884 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.535 3.465 21 O -0.533 6.533 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.340 0.660 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 1.525 -11.894 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.183 4.183 3 C 0.043 3.957 4 H 0.091 0.909 5 C -0.228 4.228 6 N -0.348 5.348 7 C 0.004 3.996 8 C -0.101 4.101 9 N -0.313 5.313 10 C 0.063 3.937 11 H 0.048 0.952 12 C -0.515 4.515 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.522 5.522 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.324 3.676 21 O -0.408 6.408 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.259 1.164 -12.121 14.714 hybrid contribution -1.718 -0.342 0.907 1.973 sum -9.978 0.821 -11.214 15.033 Atomic orbital electron populations 1.21707 0.96376 1.00994 1.01165 1.21989 0.95517 0.97099 1.03703 1.20948 0.95385 0.93169 0.86179 0.90884 1.22213 0.95557 1.02132 1.02870 1.47746 1.51928 1.29044 1.06051 1.21363 0.93137 0.87863 0.97236 1.22280 0.93947 1.00493 0.93393 1.61670 1.33319 1.25362 1.10973 1.19666 0.97126 0.86027 0.90925 0.95249 1.20443 0.92472 1.47404 0.91226 0.90078 1.25046 0.96445 0.94202 0.97042 1.69881 1.28114 1.47974 1.06186 0.86884 0.84746 0.78816 0.78999 1.20202 1.20813 1.19701 1.20731 0.78751 0.83018 0.85076 1.90507 1.35800 1.27533 1.87000 0.92939 0.93472 0.93210 0.91895 0.89116 0.89442 0.92856 0.93081 0.91956 0.91971 0.95605 0.90275 0.84071 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.80 37.16 0.36 -1.56 16 2 C -0.14 -2.20 5.25 -26.73 -0.14 -2.34 16 3 C 0.15 2.30 2.62 -67.93 -0.18 2.12 16 4 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 5 C -0.17 -2.78 9.09 37.15 0.34 -2.45 16 6 N -0.61 -11.12 2.25 -167.00 -0.38 -11.50 16 7 C 0.13 1.90 6.49 -4.32 -0.03 1.88 16 8 C 0.03 0.46 6.63 -3.68 -0.02 0.44 16 9 N -0.68 -13.95 6.51 -109.21 -0.71 -14.66 16 10 C 0.17 4.15 2.14 -70.23 -0.15 4.00 16 11 H 0.03 0.74 5.58 -51.93 -0.29 0.45 16 12 C -0.48 -13.67 8.74 -34.44 -0.30 -13.97 16 13 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -26.90 13.96 55.43 0.77 -26.12 16 16 Si 0.88 20.88 26.66 -169.99 -4.53 16.35 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -5.91 6.10 56.52 0.34 -5.57 16 20 C 0.53 12.30 6.52 -11.67 -0.08 12.22 16 21 O -0.53 -13.67 12.11 5.55 0.07 -13.61 16 22 H 0.05 0.77 7.75 -51.93 -0.40 0.37 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.71 5.93 -51.93 -0.31 1.40 16 27 H 0.09 1.77 5.93 -51.93 -0.31 1.46 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.34 6.86 7.76 -39.29 -0.30 6.55 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -31.70 274.86 -6.36 -38.06 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.43 Total: 4.92 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.29 Total: 2.42 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.31 Total: -52.28 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.61 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.53 Total: 16.35 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.70 -6.36 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.336 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds