Wall clock time and date at job start Mon Mar 30 2020 02:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 H 1.09003 * 109.46716 * 304.99622 * 3 2 1 5 5 C 1.52994 * 109.47388 * 185.00252 * 3 2 1 6 6 N 1.46504 * 109.47397 * 64.99455 * 3 2 1 7 7 C 1.46004 * 118.53910 * 240.00077 * 6 3 2 8 8 C 1.52980 * 110.04185 * 161.83785 * 7 6 3 9 9 N 1.47184 * 108.72843 * 50.29623 * 8 7 6 10 10 C 1.46907 * 110.17562 * 290.99864 * 9 8 7 11 11 H 1.08996 * 109.38645 * 290.24946 * 10 9 8 12 12 C 1.50697 * 109.38978 * 170.45536 * 10 9 8 13 13 H 1.08004 * 120.00006 * 275.23232 * 12 10 9 14 14 C 1.37878 * 120.00013 * 95.22745 * 12 10 9 15 15 N 1.31517 * 119.99374 * 174.46757 * 14 12 10 16 16 Si 1.86793 * 120.00087 * 354.74139 * 14 12 10 17 17 H 1.48504 * 109.47027 * 94.62390 * 16 14 12 18 18 H 1.48502 * 109.47107 * 214.62422 * 16 14 12 19 19 H 1.48499 * 109.47157 * 334.62594 * 16 14 12 20 20 C 1.33711 * 118.53137 * 60.00282 * 6 3 2 21 21 O 1.21283 * 118.63049 * 1.68669 * 20 6 3 22 22 H 1.09002 * 109.47334 * 300.00324 * 1 2 3 23 23 H 1.09004 * 109.47201 * 60.00312 * 1 2 3 24 24 H 1.09003 * 109.47515 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47462 * 239.99536 * 2 1 3 26 26 H 1.08998 * 109.46768 * 119.99616 * 2 1 3 27 27 H 1.09003 * 109.46678 * 299.99394 * 5 3 2 28 28 H 1.08997 * 109.47248 * 59.99035 * 5 3 2 29 29 H 1.08996 * 109.47560 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.37258 * 41.67060 * 7 6 3 31 31 H 1.08999 * 109.28431 * 281.95790 * 7 6 3 32 32 H 1.09005 * 109.59894 * 290.51981 * 8 7 6 33 33 H 1.09002 * 109.59424 * 170.06461 * 8 7 6 34 34 H 1.00903 * 111.00574 * 167.63292 * 9 8 7 35 35 H 0.96999 * 119.99395 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0976 1.2518 7 6 0.8055 3.2850 1.1845 8 6 0.1560 3.5435 2.5452 9 7 1.2019 3.5187 3.5804 10 6 1.7206 2.1541 3.7441 11 1 0.9556 1.5290 4.2046 12 6 2.9403 2.1852 4.6286 13 1 3.9104 2.3965 4.2035 14 6 2.8178 1.9439 5.9806 15 7 3.8927 1.8631 6.7341 16 14 1.1257 1.7241 6.7405 17 1 0.7959 0.2775 6.8046 18 1 1.1211 2.2940 8.1118 19 1 0.1148 2.4259 5.9093 20 6 2.0900 1.5813 2.4049 21 8 2.8156 0.6102 2.3686 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9994 0.9053 0.7161 28 1 3.8531 0.9569 -1.0571 29 1 3.9282 2.4719 -0.1253 30 1 0.0280 3.1326 0.4359 31 1 1.4134 4.1453 0.9046 32 1 -0.5813 2.7676 2.7518 33 1 -0.3292 4.5196 2.5391 34 1 0.8533 3.8804 4.4556 35 1 3.8066 1.6930 7.6851 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219486381.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:32 Heat of formation + Delta-G solvation = -53.280500 kcal Electronic energy + Delta-G solvation = -16877.790382 eV Core-core repulsion = 14295.796327 eV Total energy + Delta-G solvation = -2581.994055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53668 -37.54933 -37.23537 -34.78781 -33.30571 -31.18646 -30.58554 -27.89863 -25.48794 -24.21970 -23.86197 -21.79389 -19.34451 -19.04776 -18.11261 -17.16101 -16.61716 -16.44936 -15.66006 -15.50367 -15.00281 -14.74665 -14.51133 -14.47000 -13.99441 -13.64767 -13.22017 -13.13317 -12.89745 -12.70139 -12.55630 -12.42458 -11.93054 -11.91164 -11.77107 -11.65326 -11.56975 -10.85765 -10.20280 -9.48131 -9.24329 -8.35366 -6.42968 1.25513 1.31529 1.39749 1.88242 2.20952 2.26332 2.93055 3.52486 3.81852 4.02008 4.10319 4.20316 4.25442 4.37608 4.46996 4.50523 4.61559 4.67577 4.76738 4.79187 4.88144 4.99718 5.06278 5.13830 5.22214 5.30669 5.41277 5.46482 5.85547 6.02663 6.32599 6.46977 6.65413 6.75345 7.18843 7.51157 8.82545 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031802 B = 0.009978 C = 0.009257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.223238 B = 2805.399590 C = 3023.937020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.141 3.859 4 H 0.120 0.880 5 C -0.167 4.167 6 N -0.603 5.603 7 C 0.118 3.882 8 C 0.027 3.973 9 N -0.688 5.688 10 C 0.177 3.823 11 H 0.027 0.973 12 C -0.489 4.489 13 H 0.018 0.982 14 C 0.014 3.986 15 N -0.940 5.940 16 Si 0.955 3.045 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.236 1.236 20 C 0.524 3.476 21 O -0.576 6.576 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.120 0.880 34 H 0.342 0.658 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.941 2.632 -14.181 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.039 3.961 4 H 0.138 0.862 5 C -0.225 4.225 6 N -0.337 5.337 7 C -0.004 4.004 8 C -0.102 4.102 9 N -0.323 5.323 10 C 0.066 3.934 11 H 0.044 0.956 12 C -0.528 4.528 13 H 0.037 0.963 14 C -0.185 4.185 15 N -0.580 5.580 16 Si 0.778 3.222 17 H -0.205 1.205 18 H -0.198 1.198 19 H -0.159 1.159 20 C 0.313 3.687 21 O -0.455 6.455 22 H 0.054 0.946 23 H 0.097 0.903 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.162 0.838 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.003 2.321 -14.467 18.941 hybrid contribution -0.475 -0.654 1.476 1.683 sum -12.479 1.668 -12.991 18.091 Atomic orbital electron populations 1.21663 0.94415 1.01723 1.01801 1.21937 0.97188 0.96493 1.02554 1.21259 0.94779 0.93986 0.86071 0.86231 1.22159 0.96511 1.01440 1.02393 1.47736 1.51066 1.29466 1.05413 1.21757 0.93980 0.86582 0.98083 1.22525 0.92740 1.03101 0.91855 1.61301 1.36059 1.22559 1.12383 1.19391 0.95074 0.87875 0.91060 0.95604 1.20495 0.92094 1.47753 0.92448 0.96325 1.26045 1.01525 0.93594 0.97335 1.70057 1.31250 1.49933 1.06728 0.85656 0.79266 0.78811 0.78514 1.20473 1.19831 1.15915 1.20542 0.78971 0.82875 0.86315 1.90504 1.37749 1.29423 1.87795 0.94566 0.90288 0.92673 0.89625 0.93735 0.94239 0.89722 0.93433 0.87134 0.91136 0.94931 0.86163 0.83817 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.80 71.98 0.71 -2.48 16 2 C -0.14 -4.08 5.25 30.59 0.16 -3.92 16 3 C 0.14 4.04 2.62 44.99 0.12 4.15 16 4 H 0.12 2.39 7.84 -2.39 -0.02 2.37 16 5 C -0.17 -5.37 9.09 71.98 0.65 -4.72 16 6 N -0.60 -20.71 2.25 -801.26 -1.80 -22.51 16 7 C 0.12 2.97 6.49 86.47 0.56 3.53 16 8 C 0.03 0.74 6.63 86.24 0.57 1.31 16 9 N -0.69 -27.11 6.51 -499.43 -3.25 -30.37 16 10 C 0.18 8.62 2.14 43.28 0.09 8.71 16 11 H 0.03 1.29 5.58 -2.39 -0.01 1.28 16 12 C -0.49 -29.63 8.74 25.60 0.22 -29.40 16 13 H 0.02 1.31 8.06 -2.91 -0.02 1.28 16 14 C 0.01 0.81 5.47 84.65 0.46 1.28 16 15 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 16 Si 0.96 43.64 26.66 68.60 1.83 45.47 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.24 -9.27 6.10 99.48 0.61 -8.67 16 20 C 0.52 24.50 6.52 87.68 0.57 25.07 16 21 O -0.58 -31.24 12.11 -3.04 -0.04 -31.28 16 22 H 0.04 0.94 7.75 -2.39 -0.02 0.92 16 23 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.04 1.70 5.93 -2.39 -0.01 1.69 16 27 H 0.04 1.66 5.93 -2.39 -0.01 1.65 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.11 1.83 8.09 -2.39 -0.02 1.82 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 0.88 8.08 -2.38 -0.02 0.86 16 33 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.34 13.03 7.76 -89.69 -0.70 12.34 16 35 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -77.15 274.86 1.44 -75.71 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.28 Total: 19.43 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 4.12 Total: 3.54 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.75 Total: -112.87 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.04 Total: -31.28 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.83 Total: 45.47 kcal Total: -77.15 1.44 -75.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486381.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.430 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds