Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 N 1.46506 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.33567 * 118.57680 * 270.09227 * 4 3 2 6 6 O 1.21280 * 118.52105 * 1.67227 * 5 4 3 7 7 C 1.50259 * 122.85045 * 181.78005 * 5 4 3 8 8 H 1.09003 * 109.38358 * 102.74465 * 7 5 4 9 9 C 1.50706 * 109.38091 * 222.53022 * 7 5 4 10 10 H 1.07999 * 120.00193 * 0.21702 * 9 7 5 11 11 C 1.37879 * 119.99398 * 180.20782 * 9 7 5 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 N 1.46891 * 109.89779 * 342.63886 * 7 5 4 18 18 C 1.47189 * 110.18000 * 50.35162 * 17 7 5 19 19 C 1.46006 * 118.53326 * 90.00054 * 4 3 2 20 20 H 1.09001 * 109.37828 * 282.01517 * 19 4 3 21 21 C 1.53006 * 109.28439 * 41.72603 * 19 4 3 22 22 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47038 * 299.99883 * 1 2 3 24 24 H 1.08998 * 109.47191 * 59.99920 * 1 2 3 25 25 H 1.09003 * 109.46573 * 239.99941 * 2 1 3 26 26 H 1.08998 * 109.47191 * 120.00080 * 2 1 3 27 27 H 1.08994 * 109.47286 * 60.00458 * 3 2 1 28 28 H 1.08998 * 109.47194 * 300.00079 * 3 2 1 29 29 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 30 30 H 1.00898 * 111.00138 * 173.71860 * 17 7 5 31 31 H 1.08997 * 109.58990 * 50.77048 * 18 17 7 32 32 H 1.08996 * 109.59865 * 171.22606 * 18 17 7 33 33 H 1.08997 * 109.47203 * 180.52575 * 21 19 4 34 34 H 1.08998 * 109.46817 * 300.51927 * 21 19 4 35 35 H 1.08991 * 109.46971 * 60.52258 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1444 1.4404 1.1721 6 8 3.4865 1.4075 2.1903 7 6 5.6423 1.4794 1.2838 8 1 5.9589 2.4870 1.5535 9 6 6.0897 0.5124 2.3496 10 1 5.3596 -0.0735 2.8880 11 6 7.4313 0.3757 2.6370 12 7 7.8217 -0.4686 3.5668 13 14 8.6942 1.3895 1.7061 14 1 9.1318 0.6463 0.4972 15 1 8.0882 2.6829 1.2996 16 1 9.8662 1.6452 2.5813 17 7 6.2494 1.1050 -0.0004 18 6 5.6522 1.8906 -1.0925 19 6 4.2019 1.4427 -1.2836 20 1 4.1864 0.4370 -1.7038 21 6 3.4959 2.4041 -2.2420 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 8.7656 -0.5651 3.7688 30 1 7.2510 1.2240 0.0248 31 1 5.6769 2.9498 -0.8366 32 1 6.2114 1.7214 -2.0127 33 1 4.0083 2.3996 -3.2040 34 1 2.4624 2.0863 -2.3794 35 1 3.5142 3.4110 -1.8253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219486871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = -24.736826 kcal Electronic energy + Delta-G solvation = -16646.594442 eV Core-core repulsion = 14065.838133 eV Total energy + Delta-G solvation = -2580.756308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.94218 -36.31999 -35.57377 -33.23644 -31.96996 -30.64713 -27.97569 -26.55472 -24.13675 -22.93591 -21.74841 -21.01189 -17.77385 -17.01876 -16.54157 -16.19746 -15.14772 -14.72593 -14.36982 -14.14394 -13.75739 -13.33199 -13.15344 -12.82370 -12.45499 -12.18451 -11.95917 -11.91428 -11.54151 -11.24520 -11.00991 -10.97826 -10.82826 -10.69517 -10.34239 -9.91800 -9.47955 -8.77743 -8.70154 -8.12850 -7.74437 -6.14632 -4.15218 3.13424 3.15524 3.25099 3.51477 3.61844 4.26160 4.64630 4.94271 5.07992 5.17881 5.27339 5.31694 5.48125 5.49770 5.55178 5.61111 5.69764 5.79311 5.87543 5.95155 6.00848 6.11210 6.15691 6.28100 6.41310 6.52002 6.58233 6.95086 7.24901 7.78199 7.90208 8.13377 8.45190 8.97052 9.07578 9.42660 10.98341 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.009608 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.759908 B = 2913.504099 C = 3512.489903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.106 3.894 4 N -0.611 5.611 5 C 0.539 3.461 6 O -0.543 6.543 7 C 0.171 3.829 8 H 0.030 0.970 9 C -0.485 4.485 10 H 0.089 0.911 11 C 0.079 3.921 12 N -0.887 5.887 13 Si 0.872 3.128 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.286 1.286 17 N -0.676 5.676 18 C 0.033 3.967 19 C 0.150 3.850 20 H 0.075 0.925 21 C -0.164 4.164 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.267 0.733 30 H 0.327 0.673 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 5.306 -13.188 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C -0.016 4.016 4 N -0.345 5.345 5 C 0.328 3.672 6 O -0.419 6.419 7 C 0.062 3.938 8 H 0.047 0.953 9 C -0.524 4.524 10 H 0.107 0.893 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.701 3.299 14 H -0.194 1.194 15 H -0.198 1.198 16 H -0.213 1.213 17 N -0.315 5.315 18 C -0.097 4.097 19 C 0.046 3.954 20 H 0.092 0.908 21 C -0.222 4.222 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.461 4.676 -12.599 15.881 hybrid contribution 1.298 1.259 -0.471 1.869 sum -7.163 5.934 -13.071 16.043 Atomic orbital electron populations 1.21680 0.95746 1.01499 1.01441 1.21848 0.95407 0.97770 1.02748 1.21503 0.80789 0.96856 1.02493 1.47631 1.05958 1.74853 1.06078 1.20469 0.90946 0.73782 0.81969 1.90592 1.66909 1.49556 1.34831 1.19720 0.87438 0.97829 0.88844 0.95255 1.20702 0.93631 1.22757 1.15308 0.89271 1.24922 0.97967 0.94938 0.94637 1.69857 1.16234 1.35397 1.31012 0.87057 0.81910 0.80635 0.80305 1.19427 1.19845 1.21270 1.61750 1.08351 1.57172 1.04241 1.22349 0.94598 0.95796 0.96965 1.20909 0.91357 0.99308 0.83825 0.90754 1.22210 1.00987 0.99781 0.99263 0.92802 0.92634 0.93120 0.92250 0.91161 0.90276 0.90912 0.92284 0.84933 0.95054 0.90081 0.91375 0.91741 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.33 16 2 C -0.14 -2.06 6.25 -26.73 -0.17 -2.23 16 3 C 0.11 1.65 5.01 -4.04 -0.02 1.63 16 4 N -0.61 -11.34 2.71 -167.01 -0.45 -11.80 16 5 C 0.54 12.80 7.10 -11.74 -0.08 12.72 16 6 O -0.54 -14.52 15.52 5.56 0.09 -14.43 16 7 C 0.17 4.29 2.15 -70.23 -0.15 4.14 16 8 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 9 C -0.48 -14.35 9.07 -34.44 -0.31 -14.66 16 10 H 0.09 2.97 7.64 -52.49 -0.40 2.57 16 11 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 12 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 13 Si 0.87 20.81 24.58 -169.99 -4.18 16.63 16 14 H -0.27 -6.06 7.02 56.52 0.40 -5.66 16 15 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 N -0.68 -14.82 6.41 -109.21 -0.70 -15.52 16 18 C 0.03 0.55 5.92 -3.67 -0.02 0.53 16 19 C 0.15 2.30 3.56 -68.20 -0.24 2.06 16 20 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 21 C -0.16 -1.80 8.61 37.16 0.32 -1.48 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.36 7.26 -51.93 -0.38 0.98 16 28 H 0.07 0.89 5.49 -51.93 -0.29 0.61 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.33 7.19 4.16 -39.29 -0.16 7.03 16 31 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.64 6.26 -51.93 -0.33 0.31 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 274.54 15.07 4.14 4.14 Total: -1.00 -32.92 274.54 -6.06 -38.98 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.32 Total: 4.89 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.41 Total: 3.58 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.38 Total: -53.78 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.09 Total: -14.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.18 Total: 16.63 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.92 -6.06 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.242 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds