Wall clock time and date at job start Mon Mar 30 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47041 * 2 1 4 4 N 1.46506 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.33567 * 118.57680 * 270.09227 * 4 3 2 6 6 O 1.21280 * 118.52105 * 1.67227 * 5 4 3 7 7 C 1.50259 * 122.85045 * 181.78005 * 5 4 3 8 8 H 1.09003 * 109.38358 * 102.74465 * 7 5 4 9 9 C 1.50706 * 109.38091 * 222.53022 * 7 5 4 10 10 H 1.07999 * 120.00193 * 0.21702 * 9 7 5 11 11 C 1.37879 * 119.99398 * 180.20782 * 9 7 5 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 7 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 N 1.46891 * 109.89779 * 342.63886 * 7 5 4 18 18 C 1.47189 * 110.18000 * 50.35162 * 17 7 5 19 19 C 1.46006 * 118.53326 * 90.00054 * 4 3 2 20 20 H 1.09001 * 109.37828 * 282.01517 * 19 4 3 21 21 C 1.53006 * 109.28439 * 41.72603 * 19 4 3 22 22 H 1.08994 * 109.47387 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47038 * 299.99883 * 1 2 3 24 24 H 1.08998 * 109.47191 * 59.99920 * 1 2 3 25 25 H 1.09003 * 109.46573 * 239.99941 * 2 1 3 26 26 H 1.08998 * 109.47191 * 120.00080 * 2 1 3 27 27 H 1.08994 * 109.47286 * 60.00458 * 3 2 1 28 28 H 1.08998 * 109.47194 * 300.00079 * 3 2 1 29 29 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 30 30 H 1.00898 * 111.00138 * 173.71860 * 17 7 5 31 31 H 1.08997 * 109.58990 * 50.77048 * 18 17 7 32 32 H 1.08996 * 109.59865 * 171.22606 * 18 17 7 33 33 H 1.08997 * 109.47203 * 180.52575 * 21 19 4 34 34 H 1.08998 * 109.46817 * 300.51927 * 21 19 4 35 35 H 1.08991 * 109.46971 * 60.52258 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1444 1.4404 1.1721 6 8 3.4865 1.4075 2.1903 7 6 5.6423 1.4794 1.2838 8 1 5.9589 2.4870 1.5535 9 6 6.0897 0.5124 2.3496 10 1 5.3596 -0.0735 2.8880 11 6 7.4313 0.3757 2.6370 12 7 7.8217 -0.4686 3.5668 13 14 8.6942 1.3895 1.7061 14 1 9.1318 0.6463 0.4972 15 1 8.0882 2.6829 1.2996 16 1 9.8662 1.6452 2.5813 17 7 6.2494 1.1050 -0.0004 18 6 5.6522 1.8906 -1.0925 19 6 4.2019 1.4427 -1.2836 20 1 4.1864 0.4370 -1.7038 21 6 3.4959 2.4041 -2.2420 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 8.7656 -0.5651 3.7688 30 1 7.2510 1.2240 0.0248 31 1 5.6769 2.9498 -0.8366 32 1 6.2114 1.7214 -2.0127 33 1 4.0083 2.3996 -3.2040 34 1 2.4624 2.0863 -2.3794 35 1 3.5142 3.4110 -1.8253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219486871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:19 Heat of formation + Delta-G solvation = -51.100964 kcal Electronic energy + Delta-G solvation = -16647.737676 eV Core-core repulsion = 14065.838133 eV Total energy + Delta-G solvation = -2581.899543 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.57205 -37.99401 -37.15997 -34.86650 -33.76695 -32.05712 -29.71865 -27.85694 -25.75324 -24.55592 -23.15358 -22.35957 -19.29965 -19.11939 -18.19119 -17.88693 -16.69097 -16.36475 -15.78611 -15.67024 -15.43878 -14.98773 -14.68390 -14.28089 -13.83840 -13.49682 -13.30205 -13.12042 -12.88316 -12.67900 -12.59020 -12.39015 -12.15777 -12.08191 -11.81612 -11.66274 -11.45303 -10.88530 -10.62310 -9.63969 -9.44004 -8.37822 -6.47816 1.20211 1.30801 1.37534 1.71698 2.10834 2.22771 2.83963 3.36751 3.69271 3.82401 4.05212 4.11867 4.20619 4.27553 4.39780 4.47817 4.52212 4.68281 4.68909 4.74513 4.87323 4.92287 5.08509 5.13800 5.18844 5.25530 5.31013 5.42513 5.66453 5.97589 6.12435 6.27547 6.50384 6.63535 7.13465 7.32523 8.80020 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.009608 C = 0.007970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.759908 B = 2913.504099 C = 3512.489903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.103 3.897 4 N -0.601 5.601 5 C 0.528 3.472 6 O -0.593 6.593 7 C 0.177 3.823 8 H 0.025 0.975 9 C -0.509 4.509 10 H 0.023 0.977 11 C 0.018 3.982 12 N -0.940 5.940 13 Si 0.951 3.049 14 H -0.238 1.238 15 H -0.252 1.252 16 H -0.283 1.283 17 N -0.688 5.688 18 C 0.027 3.973 19 C 0.138 3.862 20 H 0.080 0.920 21 C -0.153 4.153 22 H 0.061 0.939 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.272 0.728 30 H 0.328 0.672 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 7.109 -17.600 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C -0.019 4.019 4 N -0.333 5.333 5 C 0.317 3.683 6 O -0.473 6.473 7 C 0.067 3.933 8 H 0.042 0.958 9 C -0.548 4.548 10 H 0.042 0.958 11 C -0.181 4.181 12 N -0.579 5.579 13 Si 0.774 3.226 14 H -0.163 1.163 15 H -0.176 1.176 16 H -0.210 1.210 17 N -0.326 5.326 18 C -0.102 4.102 19 C 0.036 3.964 20 H 0.098 0.902 21 C -0.211 4.211 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.453 6.477 -17.089 20.136 hybrid contribution 1.193 0.629 0.900 1.621 sum -7.260 7.107 -16.189 19.113 Atomic orbital electron populations 1.21639 0.92888 1.02480 1.02636 1.21805 0.97904 0.96832 1.00877 1.21771 0.78860 0.97560 1.03682 1.47704 1.07444 1.72349 1.05823 1.20363 0.90636 0.74202 0.83147 1.90555 1.67596 1.52137 1.37003 1.19369 0.88790 0.95817 0.89346 0.95801 1.20730 0.93138 1.23567 1.17394 0.95846 1.25980 1.00385 0.96181 0.95565 1.70043 1.17185 1.37576 1.33140 0.85787 0.77855 0.79455 0.79457 1.16269 1.17630 1.20966 1.61421 1.08426 1.58905 1.03865 1.22677 0.95503 0.95542 0.96473 1.21339 0.91105 1.01232 0.82757 0.90205 1.22160 1.01689 0.98158 0.99088 0.92019 0.93320 0.89982 0.90959 0.96145 0.92518 0.86117 0.91862 0.84911 0.94138 0.85804 0.88184 0.90095 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.14 -3.94 6.25 30.59 0.19 -3.75 16 3 C 0.10 3.05 5.01 86.38 0.43 3.49 16 4 N -0.60 -21.70 2.71 -801.37 -2.17 -23.87 16 5 C 0.53 25.92 7.10 87.71 0.62 26.54 16 6 O -0.59 -33.95 15.52 -3.03 -0.05 -34.00 16 7 C 0.18 9.07 2.15 43.29 0.09 9.17 16 8 H 0.02 1.27 7.20 -2.39 -0.02 1.25 16 9 C -0.51 -32.02 9.07 25.60 0.23 -31.79 16 10 H 0.02 1.71 7.64 -2.91 -0.02 1.69 16 11 C 0.02 1.06 5.47 84.66 0.46 1.52 16 12 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 13 Si 0.95 42.93 24.58 68.60 1.69 44.62 16 14 H -0.24 -9.61 7.02 99.48 0.70 -8.91 16 15 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 16 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 17 N -0.69 -28.89 6.41 -499.44 -3.20 -32.09 16 18 C 0.03 0.79 5.92 86.24 0.51 1.30 16 19 C 0.14 3.71 3.56 45.08 0.16 3.87 16 20 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 21 C -0.15 -2.47 8.61 71.98 0.62 -1.85 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.96 7.26 -2.39 -0.02 1.94 16 28 H 0.12 2.43 5.49 -2.39 -0.01 2.42 16 29 H 0.27 16.05 8.31 -92.70 -0.77 15.28 16 30 H 0.33 13.43 4.16 -89.70 -0.37 13.06 16 31 H 0.04 1.14 8.05 -2.39 -0.02 1.12 16 32 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.07 6.26 -2.39 -0.01 1.06 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -80.43 274.54 1.24 -79.19 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.63 Total: 20.15 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 4.04 Total: 6.27 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -5.07 Total: -116.23 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.05 Total: -34.00 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.69 Total: 44.62 kcal Total: -80.43 1.24 -79.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219486871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -80.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds