Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46502 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.46008 * 118.53865 * 90.00359 * 4 3 2 6 6 C 1.52982 * 110.04127 * 161.84033 * 5 4 3 7 7 H 1.09008 * 109.59151 * 290.51028 * 6 5 4 8 8 C 1.53006 * 109.59312 * 170.06536 * 6 5 4 9 9 N 1.47182 * 108.73330 * 50.28706 * 6 5 4 10 10 C 1.46898 * 110.17826 * 291.00255 * 9 6 5 11 11 H 1.09001 * 109.38927 * 170.35182 * 10 9 6 12 12 C 1.50706 * 109.38310 * 290.14417 * 10 9 6 13 13 H 1.07995 * 120.00167 * 359.71984 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.33719 * 118.53618 * 269.99759 * 4 3 2 21 21 O 1.21288 * 118.62497 * 1.69099 * 20 4 3 22 22 H 1.09004 * 109.47365 * 299.99579 * 1 2 3 23 23 H 1.08999 * 109.47643 * 60.00000 * 1 2 3 24 24 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47101 * 240.00050 * 2 1 3 26 26 H 1.09001 * 109.47459 * 120.00518 * 2 1 3 27 27 H 1.08996 * 109.46947 * 60.00582 * 3 2 1 28 28 H 1.08996 * 109.47049 * 299.99695 * 3 2 1 29 29 H 1.08992 * 109.37693 * 41.65810 * 5 4 3 30 30 H 1.09005 * 109.27518 * 281.95289 * 5 4 3 31 31 H 1.09000 * 109.46591 * 300.75350 * 8 6 5 32 32 H 1.09002 * 109.46783 * 60.75303 * 8 6 5 33 33 H 1.08997 * 109.47089 * 180.75008 * 8 6 5 34 34 H 1.00904 * 111.00191 * 54.37124 * 9 6 5 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2020 1.4427 -1.2836 6 6 5.6522 1.8906 -1.0922 7 1 5.6769 2.9499 -0.8365 8 6 6.4372 1.6531 -2.3839 9 7 6.2493 1.1050 -0.0002 10 6 5.6423 1.4795 1.2840 11 1 5.9644 0.7789 2.0545 12 6 6.0820 2.8715 1.6581 13 1 6.7489 3.4198 1.0094 14 6 5.6369 3.4430 2.8313 15 7 4.8292 2.7732 3.6241 16 14 6.1814 5.1688 3.2947 17 1 7.0835 5.7025 2.2428 18 1 4.9904 6.0471 3.4185 19 1 6.9036 5.1285 4.5917 20 6 4.1442 1.4423 1.1739 21 8 3.4874 1.4108 2.1930 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.6996 2.1263 -1.9679 30 1 4.1865 0.4362 -1.7017 31 1 6.4042 0.5940 -2.6395 32 1 5.9933 2.2357 -3.1912 33 1 7.4732 1.9604 -2.2412 34 1 6.1518 0.1154 -0.1713 35 1 4.5165 3.1752 4.4496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219487804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -27.612533 kcal Electronic energy + Delta-G solvation = -16736.541422 eV Core-core repulsion = 14155.660413 eV Total energy + Delta-G solvation = -2580.881008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.44358 -35.97061 -35.07030 -32.77369 -31.75434 -30.49036 -26.50218 -26.14848 -25.00856 -22.54420 -21.40656 -20.63704 -18.34886 -16.21225 -15.57163 -15.54248 -14.79061 -14.55036 -14.23187 -13.96662 -13.65925 -12.97814 -12.68996 -12.28434 -12.13253 -11.82419 -11.69760 -11.48644 -11.10051 -11.06093 -10.89415 -10.77016 -10.64908 -10.40881 -10.19202 -9.88550 -9.30183 -8.91683 -8.44863 -7.68315 -7.15575 -5.86937 -4.03790 3.32182 3.39868 3.43495 3.94115 4.24171 4.46590 5.06041 5.21664 5.29779 5.33997 5.40658 5.56290 5.71296 5.72432 5.79976 5.88135 5.98611 6.06423 6.12557 6.15587 6.22425 6.34235 6.51203 6.60388 6.66556 6.72364 7.10862 7.43716 7.77454 7.93641 7.99378 8.52449 8.63085 8.99848 9.58292 9.77793 11.08718 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.011287 C = 0.008433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.736478 B = 2480.200675 C = 3319.371523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.114 3.886 4 N -0.630 5.630 5 C 0.095 3.905 6 C 0.072 3.928 7 H 0.096 0.904 8 C -0.135 4.135 9 N -0.671 5.671 10 C 0.215 3.785 11 H 0.065 0.935 12 C -0.523 4.523 13 H 0.070 0.930 14 C 0.060 3.940 15 N -0.829 5.829 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.283 1.283 20 C 0.479 3.521 21 O -0.500 6.500 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.319 0.681 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -3.520 -10.718 11.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.009 4.009 4 N -0.368 5.368 5 C -0.031 4.031 6 C -0.039 4.039 7 H 0.115 0.885 8 C -0.193 4.193 9 N -0.300 5.300 10 C 0.103 3.897 11 H 0.083 0.917 12 C -0.561 4.561 13 H 0.088 0.912 14 C -0.148 4.148 15 N -0.462 5.462 16 Si 0.719 3.281 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.209 1.209 20 C 0.267 3.733 21 O -0.370 6.370 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.312 -3.113 -9.815 10.816 hybrid contribution -0.865 0.610 0.104 1.064 sum -4.177 -2.502 -9.711 10.863 Atomic orbital electron populations 1.21682 0.95967 1.01176 1.01567 1.21834 0.95309 0.98368 1.01861 1.21269 0.82126 0.95775 1.01766 1.47922 1.05236 1.77280 1.06330 1.22035 0.95320 0.99661 0.86111 1.21823 0.89304 1.00813 0.91972 0.88547 1.21702 1.00938 1.00897 0.95802 1.61012 1.59104 1.07191 1.02653 1.19378 0.83612 0.99588 0.87099 0.91699 1.20704 1.30217 0.99002 1.06179 0.91197 1.25166 0.94944 0.97995 0.96671 1.70308 1.29081 1.35994 1.10856 0.86543 0.78321 0.84652 0.78557 1.19638 1.21267 1.20879 1.22652 0.93871 0.75050 0.81710 1.90651 1.66927 1.45937 1.33445 0.92598 0.93128 0.93067 0.92793 0.91654 0.90445 0.92515 0.92478 0.93689 0.93239 0.92922 0.91628 0.86569 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.15 0.37 -1.52 16 2 C -0.13 -2.14 6.25 -26.73 -0.17 -2.31 16 3 C 0.11 2.09 5.27 -4.04 -0.02 2.06 16 4 N -0.63 -12.97 2.83 -174.59 -0.49 -13.46 16 5 C 0.09 1.58 5.84 -4.32 -0.03 1.55 16 6 C 0.07 1.27 2.98 -67.56 -0.20 1.07 16 7 H 0.10 1.98 6.89 -51.92 -0.36 1.62 16 8 C -0.14 -1.83 9.52 37.16 0.35 -1.47 16 9 N -0.67 -13.68 6.31 -102.21 -0.64 -14.32 16 10 C 0.21 5.45 2.97 -70.23 -0.21 5.24 16 11 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 12 C -0.52 -14.47 7.82 -34.44 -0.27 -14.74 16 13 H 0.07 1.92 7.42 -52.49 -0.39 1.53 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.83 -25.11 10.47 55.43 0.58 -24.53 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.48 12.16 6.60 -11.67 -0.08 12.08 16 21 O -0.50 -14.57 13.51 5.55 0.08 -14.50 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.63 7.26 -51.93 -0.38 1.26 16 28 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 29 H 0.06 0.85 7.98 -51.93 -0.41 0.43 16 30 H 0.04 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.32 5.83 8.78 -39.29 -0.34 5.49 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -31.80 282.39 -7.25 -39.05 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.66 Total: 3.15 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.34 Total: 3.59 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.56 Total: -52.31 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.08 Total: -14.50 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.80 -7.25 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219487804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.439 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds