Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47024 * 2 1 4 4 N 1.46502 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.46008 * 118.53865 * 90.00359 * 4 3 2 6 6 C 1.52982 * 110.04127 * 161.84033 * 5 4 3 7 7 H 1.09008 * 109.59151 * 290.51028 * 6 5 4 8 8 C 1.53006 * 109.59312 * 170.06536 * 6 5 4 9 9 N 1.47182 * 108.73330 * 50.28706 * 6 5 4 10 10 C 1.46898 * 110.17826 * 291.00255 * 9 6 5 11 11 H 1.09001 * 109.38927 * 170.35182 * 10 9 6 12 12 C 1.50706 * 109.38310 * 290.14417 * 10 9 6 13 13 H 1.07995 * 120.00167 * 359.71984 * 12 10 9 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.33719 * 118.53618 * 269.99759 * 4 3 2 21 21 O 1.21288 * 118.62497 * 1.69099 * 20 4 3 22 22 H 1.09004 * 109.47365 * 299.99579 * 1 2 3 23 23 H 1.08999 * 109.47643 * 60.00000 * 1 2 3 24 24 H 1.09004 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47101 * 240.00050 * 2 1 3 26 26 H 1.09001 * 109.47459 * 120.00518 * 2 1 3 27 27 H 1.08996 * 109.46947 * 60.00582 * 3 2 1 28 28 H 1.08996 * 109.47049 * 299.99695 * 3 2 1 29 29 H 1.08992 * 109.37693 * 41.65810 * 5 4 3 30 30 H 1.09005 * 109.27518 * 281.95289 * 5 4 3 31 31 H 1.09000 * 109.46591 * 300.75350 * 8 6 5 32 32 H 1.09002 * 109.46783 * 60.75303 * 8 6 5 33 33 H 1.08997 * 109.47089 * 180.75008 * 8 6 5 34 34 H 1.00904 * 111.00191 * 54.37124 * 9 6 5 35 35 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.2020 1.4427 -1.2836 6 6 5.6522 1.8906 -1.0922 7 1 5.6769 2.9499 -0.8365 8 6 6.4372 1.6531 -2.3839 9 7 6.2493 1.1050 -0.0002 10 6 5.6423 1.4795 1.2840 11 1 5.9644 0.7789 2.0545 12 6 6.0820 2.8715 1.6581 13 1 6.7489 3.4198 1.0094 14 6 5.6369 3.4430 2.8313 15 7 4.8292 2.7732 3.6241 16 14 6.1814 5.1688 3.2947 17 1 7.0835 5.7025 2.2428 18 1 4.9904 6.0471 3.4185 19 1 6.9036 5.1285 4.5917 20 6 4.1442 1.4423 1.1739 21 8 3.4874 1.4108 2.1930 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.6996 2.1263 -1.9679 30 1 4.1865 0.4362 -1.7017 31 1 6.4042 0.5940 -2.6395 32 1 5.9933 2.2357 -3.1912 33 1 7.4732 1.9604 -2.2412 34 1 6.1518 0.1154 -0.1713 35 1 4.5165 3.1752 4.4496 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219487804.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -50.960250 kcal Electronic energy + Delta-G solvation = -16737.553855 eV Core-core repulsion = 14155.660413 eV Total energy + Delta-G solvation = -2581.893441 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19389 -37.69741 -36.70391 -34.68747 -33.29748 -32.15520 -28.14333 -27.72286 -26.58733 -24.36490 -22.82156 -22.10444 -20.18008 -18.08029 -17.37505 -17.19741 -16.61673 -16.24074 -15.72392 -15.57527 -15.23685 -14.61283 -14.08535 -13.91390 -13.67652 -13.27056 -13.08499 -12.88659 -12.83729 -12.67875 -12.51306 -12.30644 -12.20935 -11.83775 -11.76033 -11.55088 -11.36382 -10.82815 -10.61369 -9.35977 -8.90817 -8.03426 -6.26885 1.37369 1.37922 1.50983 2.25033 2.36087 2.44965 3.18342 3.51894 3.85972 4.00441 4.12205 4.31328 4.39196 4.42778 4.50563 4.63220 4.68107 4.80122 4.84082 4.95153 4.99073 5.10462 5.13545 5.24797 5.33293 5.35527 5.44838 5.64593 5.88850 5.97234 6.19808 6.64743 6.81267 6.99501 7.39280 7.87170 8.91562 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.022950 B = 0.011287 C = 0.008433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.736478 B = 2480.200675 C = 3319.371523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.112 3.888 4 N -0.628 5.628 5 C 0.090 3.910 6 C 0.069 3.931 7 H 0.064 0.936 8 C -0.123 4.123 9 N -0.670 5.670 10 C 0.215 3.785 11 H 0.025 0.975 12 C -0.529 4.529 13 H 0.068 0.932 14 C 0.005 3.995 15 N -0.867 5.867 16 Si 0.960 3.040 17 H -0.258 1.258 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.476 3.524 21 O -0.551 6.551 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.332 0.668 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -3.293 -13.859 14.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C -0.011 4.011 4 N -0.364 5.364 5 C -0.034 4.034 6 C -0.042 4.042 7 H 0.082 0.918 8 C -0.181 4.181 9 N -0.300 5.300 10 C 0.102 3.898 11 H 0.042 0.958 12 C -0.567 4.567 13 H 0.087 0.913 14 C -0.199 4.199 15 N -0.502 5.502 16 Si 0.785 3.215 17 H -0.182 1.182 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.263 3.737 21 O -0.425 6.425 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.533 -2.896 -13.037 13.814 hybrid contribution -0.782 0.489 0.978 1.344 sum -4.315 -2.407 -12.058 13.031 Atomic orbital electron populations 1.21646 0.93513 1.02518 1.02115 1.21738 0.97395 0.96258 1.01065 1.21448 0.80502 0.97520 1.01627 1.47848 1.06568 1.75559 1.06439 1.22314 0.94321 1.02267 0.84490 1.21928 0.90905 0.98517 0.92828 0.91768 1.21618 0.99900 1.02747 0.93818 1.60909 1.58983 1.08467 1.01610 1.19050 0.84407 0.97673 0.88641 0.95770 1.20980 1.29785 0.99923 1.06045 0.91347 1.26025 0.95028 1.02089 0.96777 1.70523 1.30736 1.37760 1.11168 0.85484 0.77865 0.79640 0.78549 1.18213 1.21438 1.20370 1.22450 0.93801 0.74823 0.82591 1.90618 1.67793 1.48439 1.35675 0.93947 0.90680 0.91368 0.90535 0.95361 0.94316 0.88741 0.89348 0.90564 0.91246 0.90105 0.92303 0.85114 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.13 -3.80 6.25 30.59 0.19 -3.61 16 3 C 0.11 3.95 5.27 86.38 0.46 4.41 16 4 N -0.63 -25.32 2.83 -825.25 -2.33 -27.65 16 5 C 0.09 2.70 5.84 86.47 0.50 3.20 16 6 C 0.07 2.29 2.98 44.86 0.13 2.42 16 7 H 0.06 2.57 6.89 -2.38 -0.02 2.55 16 8 C -0.12 -2.84 9.52 71.98 0.68 -2.15 16 9 N -0.67 -27.03 6.31 -477.29 -3.01 -30.04 16 10 C 0.21 11.28 2.97 43.28 0.13 11.40 16 11 H 0.02 1.46 8.14 -2.39 -0.02 1.44 16 12 C -0.53 -30.04 7.82 25.60 0.20 -29.84 16 13 H 0.07 3.81 7.42 -2.91 -0.02 3.78 16 14 C 0.00 0.28 5.30 84.66 0.45 0.73 16 15 N -0.87 -54.95 10.47 21.45 0.22 -54.72 16 16 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 C 0.48 24.86 6.60 87.68 0.58 25.44 16 21 O -0.55 -33.89 13.51 -3.05 -0.04 -33.93 16 22 H 0.04 1.10 8.14 -2.38 -0.02 1.09 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.08 1.96 8.14 -2.38 -0.02 1.95 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.04 1.67 7.26 -2.39 -0.02 1.65 16 28 H 0.09 2.61 7.92 -2.39 -0.02 2.60 16 29 H 0.09 2.18 7.98 -2.39 -0.02 2.16 16 30 H 0.08 1.90 8.11 -2.38 -0.02 1.88 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.33 11.82 8.78 -89.69 -0.79 11.03 16 35 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.63 282.39 1.18 -72.45 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.28 Total: 16.71 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.04 Total: 9.41 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -5.12 Total: -112.41 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.04 Total: -33.93 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.63 1.18 -72.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219487804.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.487 kcal (2) G-P(sol) polarization free energy of solvation -73.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds