Wall clock time and date at job start Mon Mar 30 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 N 1.46489 * 109.47347 * 180.02562 * 3 2 1 5 5 C 1.46013 * 118.54199 * 90.00004 * 4 3 2 6 6 C 1.52977 * 110.04425 * 198.13980 * 5 4 3 7 7 N 1.47189 * 108.73282 * 309.70586 * 6 5 4 8 8 C 1.46900 * 110.99575 * 305.63180 * 7 6 5 9 9 C 1.46895 * 110.17430 * 68.99675 * 7 6 5 10 10 H 1.09001 * 109.38327 * 69.85871 * 9 7 6 11 11 C 1.50702 * 109.38892 * 189.54919 * 9 7 6 12 12 H 1.07994 * 119.99939 * 90.69406 * 11 9 7 13 13 C 1.37880 * 120.00042 * 270.69813 * 11 9 7 14 14 N 1.31516 * 119.99829 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00042 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46798 * 60.00268 * 15 13 11 17 17 H 1.48503 * 109.47162 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47241 * 300.00109 * 15 13 11 19 19 C 1.33719 * 118.53853 * 269.97398 * 4 3 2 20 20 O 1.21280 * 118.61786 * 358.33988 * 19 4 3 21 21 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46919 * 299.99987 * 1 2 3 23 23 H 1.08994 * 109.46742 * 59.99847 * 1 2 3 24 24 H 1.08999 * 109.46919 * 240.00013 * 2 1 3 25 25 H 1.08998 * 109.47628 * 120.00145 * 2 1 3 26 26 H 1.09005 * 109.47274 * 59.99702 * 3 2 1 27 27 H 1.09004 * 109.47032 * 300.00235 * 3 2 1 28 28 H 1.09002 * 109.37849 * 77.95716 * 5 4 3 29 29 H 1.09001 * 109.27748 * 318.25711 * 5 4 3 30 30 H 1.09010 * 109.59410 * 189.92761 * 6 5 4 31 31 H 1.09001 * 109.72096 * 69.55340 * 6 5 4 32 32 H 1.09001 * 109.47129 * 66.69040 * 8 7 6 33 33 H 1.09005 * 109.47073 * 186.68731 * 8 7 6 34 34 H 1.08999 * 109.47708 * 306.69496 * 8 7 6 35 35 H 0.97001 * 120.00217 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2021 1.4426 -1.2836 6 6 5.6524 0.9952 -1.0923 7 7 6.2494 1.7808 -0.0002 8 6 6.1069 3.2215 -0.2493 9 6 5.6424 1.4061 1.2839 10 1 5.9607 0.3993 1.5544 11 6 6.0894 2.3731 2.3498 12 1 5.5084 3.2608 2.5515 13 6 7.2402 2.1246 3.0674 14 7 7.9475 1.0433 2.8220 15 14 7.7947 3.3236 4.3880 16 1 6.7408 3.4365 5.4281 17 1 9.0508 2.8307 5.0083 18 1 8.0331 4.6563 3.7781 19 6 4.1443 1.4428 1.1738 20 8 3.4874 1.4740 2.1928 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8935 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 4.1863 2.4483 -1.7037 29 1 3.6994 0.7577 -1.9664 30 1 6.2116 1.1646 -2.0126 31 1 5.6799 -0.0643 -0.8378 32 1 5.0527 3.4952 -0.2062 33 1 6.6580 3.7777 0.5091 34 1 6.5042 3.4608 -1.2357 35 1 8.7574 0.8686 3.3265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219488528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:09 Heat of formation + Delta-G solvation = -26.779663 kcal Electronic energy + Delta-G solvation = -16701.361006 eV Core-core repulsion = 14120.516114 eV Total energy + Delta-G solvation = -2580.844892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89142 -36.31918 -35.41528 -32.98934 -31.94197 -29.12496 -27.58901 -25.64800 -25.38773 -22.56969 -21.85039 -20.79628 -17.73587 -16.57237 -16.06441 -15.90747 -14.98737 -14.57673 -14.50943 -13.82323 -13.58015 -13.28851 -13.02466 -12.51585 -12.16636 -11.86174 -11.66476 -11.52444 -11.22831 -11.12818 -10.86920 -10.81802 -10.64784 -10.52657 -10.32961 -10.01301 -9.23998 -9.04957 -8.54710 -8.06534 -7.03196 -6.07888 -4.13574 3.33330 3.37637 3.41504 3.65409 3.71745 4.43444 4.90963 5.08968 5.16800 5.28847 5.41524 5.49386 5.54690 5.63097 5.72974 5.86401 5.94535 6.00127 6.07849 6.12236 6.26987 6.34635 6.40706 6.45130 6.53397 6.92332 7.09421 7.30902 7.67141 7.82446 8.09155 8.38555 8.43566 8.91207 9.22462 9.51516 11.01572 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.008853 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.077481 B = 3161.897630 C = 3591.271858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.109 3.891 4 N -0.623 5.623 5 C 0.085 3.915 6 C 0.032 3.968 7 N -0.516 5.516 8 C 0.040 3.960 9 C 0.199 3.801 10 H 0.098 0.902 11 C -0.498 4.498 12 H 0.058 0.942 13 C 0.079 3.921 14 N -0.872 5.872 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.489 3.511 20 O -0.548 6.548 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.010 0.990 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.652 -0.254 -9.384 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C -0.014 4.014 4 N -0.358 5.358 5 C -0.040 4.040 6 C -0.097 4.097 7 N -0.239 5.239 8 C -0.109 4.109 9 C 0.091 3.909 10 H 0.115 0.885 11 C -0.537 4.537 12 H 0.076 0.924 13 C -0.127 4.127 14 N -0.507 5.507 15 Si 0.727 3.273 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.279 3.721 20 O -0.424 6.424 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.028 0.972 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.271 -0.453 -8.732 11.372 hybrid contribution -0.642 0.719 0.418 1.051 sum -7.914 0.266 -8.313 11.481 Atomic orbital electron populations 1.21680 0.95674 1.01434 1.01614 1.21844 0.95569 0.97916 1.02248 1.21367 0.81584 0.96343 1.02132 1.47885 1.05767 1.75573 1.06602 1.22025 0.95671 1.00755 0.85538 1.22557 0.90386 0.99558 0.97220 1.63161 1.55254 1.03928 1.01593 1.22135 0.98352 0.90388 0.99990 1.19667 0.81431 1.01655 0.88102 0.88500 1.20486 1.08673 1.07357 1.17188 0.92426 1.24936 0.96118 0.95280 0.96333 1.69932 1.15536 1.25157 1.40116 0.86538 0.77874 0.81121 0.81769 1.20030 1.21116 1.20036 1.22741 0.94142 0.73586 0.81679 1.90537 1.67752 1.49281 1.34790 0.92841 0.92590 0.93002 0.92396 0.91554 0.90226 0.91941 0.92646 0.92029 0.90322 0.90862 0.97185 0.90178 0.94003 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.14 -1.98 6.25 -26.73 -0.17 -2.15 16 3 C 0.11 1.78 5.29 -4.05 -0.02 1.76 16 4 N -0.62 -11.88 2.63 -174.59 -0.46 -12.34 16 5 C 0.09 1.34 5.63 -4.32 -0.02 1.32 16 6 C 0.03 0.56 6.05 -3.68 -0.02 0.54 16 7 N -0.52 -11.42 5.17 -237.72 -1.23 -12.65 16 8 C 0.04 0.81 8.18 60.06 0.49 1.30 16 9 C 0.20 5.10 2.45 -70.23 -0.17 4.93 16 10 H 0.10 2.76 7.45 -51.93 -0.39 2.38 16 11 C -0.50 -13.93 6.10 -34.44 -0.21 -14.14 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 14 N -0.87 -25.03 12.87 55.43 0.71 -24.31 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 19 C 0.49 11.77 6.41 -11.67 -0.07 11.69 16 20 O -0.55 -14.95 15.75 5.56 0.09 -14.86 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.08 1.46 7.21 -51.93 -0.37 1.09 16 27 H 0.06 0.85 8.03 -51.93 -0.42 0.43 16 28 H 0.06 0.83 7.02 -51.93 -0.36 0.46 16 29 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 30 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 31 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.01 0.20 6.10 -51.93 -0.32 -0.12 16 33 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 34 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -31.17 281.08 -7.17 -38.33 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.57 Total: -1.01 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 0.07 Total: 6.03 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.98 Total: -49.30 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.17 -7.17 -38.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219488528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.555 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds