Wall clock time and date at job start Mon Mar 30 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47372 * 2 1 4 4 N 1.46489 * 109.47347 * 180.02562 * 3 2 1 5 5 C 1.46013 * 118.54199 * 90.00004 * 4 3 2 6 6 C 1.52977 * 110.04425 * 198.13980 * 5 4 3 7 7 N 1.47189 * 108.73282 * 309.70586 * 6 5 4 8 8 C 1.46900 * 110.99575 * 305.63180 * 7 6 5 9 9 C 1.46895 * 110.17430 * 68.99675 * 7 6 5 10 10 H 1.09001 * 109.38327 * 69.85871 * 9 7 6 11 11 C 1.50702 * 109.38892 * 189.54919 * 9 7 6 12 12 H 1.07994 * 119.99939 * 90.69406 * 11 9 7 13 13 C 1.37880 * 120.00042 * 270.69813 * 11 9 7 14 14 N 1.31516 * 119.99829 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 120.00042 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46798 * 60.00268 * 15 13 11 17 17 H 1.48503 * 109.47162 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47241 * 300.00109 * 15 13 11 19 19 C 1.33719 * 118.53853 * 269.97398 * 4 3 2 20 20 O 1.21280 * 118.61786 * 358.33988 * 19 4 3 21 21 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46919 * 299.99987 * 1 2 3 23 23 H 1.08994 * 109.46742 * 59.99847 * 1 2 3 24 24 H 1.08999 * 109.46919 * 240.00013 * 2 1 3 25 25 H 1.08998 * 109.47628 * 120.00145 * 2 1 3 26 26 H 1.09005 * 109.47274 * 59.99702 * 3 2 1 27 27 H 1.09004 * 109.47032 * 300.00235 * 3 2 1 28 28 H 1.09002 * 109.37849 * 77.95716 * 5 4 3 29 29 H 1.09001 * 109.27748 * 318.25711 * 5 4 3 30 30 H 1.09010 * 109.59410 * 189.92761 * 6 5 4 31 31 H 1.09001 * 109.72096 * 69.55340 * 6 5 4 32 32 H 1.09001 * 109.47129 * 66.69040 * 8 7 6 33 33 H 1.09005 * 109.47073 * 186.68731 * 8 7 6 34 34 H 1.08999 * 109.47708 * 306.69496 * 8 7 6 35 35 H 0.97001 * 120.00217 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2021 1.4426 -1.2836 6 6 5.6524 0.9952 -1.0923 7 7 6.2494 1.7808 -0.0002 8 6 6.1069 3.2215 -0.2493 9 6 5.6424 1.4061 1.2839 10 1 5.9607 0.3993 1.5544 11 6 6.0894 2.3731 2.3498 12 1 5.5084 3.2608 2.5515 13 6 7.2402 2.1246 3.0674 14 7 7.9475 1.0433 2.8220 15 14 7.7947 3.3236 4.3880 16 1 6.7408 3.4365 5.4281 17 1 9.0508 2.8307 5.0083 18 1 8.0331 4.6563 3.7781 19 6 4.1443 1.4428 1.1738 20 8 3.4874 1.4740 2.1928 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8935 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 4.1863 2.4483 -1.7037 29 1 3.6994 0.7577 -1.9664 30 1 6.2116 1.1646 -2.0126 31 1 5.6799 -0.0643 -0.8378 32 1 5.0527 3.4952 -0.2062 33 1 6.6580 3.7777 0.5091 34 1 6.5042 3.4608 -1.2357 35 1 8.7574 0.8686 3.3265 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219488528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:09 Heat of formation + Delta-G solvation = -49.579966 kcal Electronic energy + Delta-G solvation = -16702.349702 eV Core-core repulsion = 14120.516114 eV Total energy + Delta-G solvation = -2581.833588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.58987 -38.07952 -36.96278 -34.76130 -33.52061 -30.83076 -29.21633 -27.29375 -26.94643 -24.29580 -23.31378 -22.19503 -19.38931 -18.59948 -17.75128 -17.56619 -16.66400 -16.20960 -15.95308 -15.45096 -15.30085 -14.86570 -14.37034 -14.07834 -13.74893 -13.39310 -13.04522 -12.96925 -12.77308 -12.76403 -12.61660 -12.33255 -12.14641 -12.10480 -11.92320 -11.63058 -11.29341 -10.93957 -10.66758 -9.60573 -8.74018 -8.19499 -6.31086 1.39252 1.42731 1.50076 1.84090 2.13288 2.43583 3.03979 3.56350 3.85943 4.02142 4.05506 4.20644 4.27581 4.36846 4.46964 4.54310 4.68674 4.72297 4.76731 4.88462 4.91796 5.05840 5.10820 5.13613 5.21135 5.32297 5.37953 5.58706 5.67734 5.83278 6.30069 6.61788 6.69624 6.79606 7.33297 7.43500 8.90252 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034387 B = 0.008853 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.077481 B = 3161.897630 C = 3591.271858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.106 3.894 4 N -0.615 5.615 5 C 0.083 3.917 6 C 0.030 3.970 7 N -0.536 5.536 8 C 0.049 3.951 9 C 0.204 3.796 10 H 0.056 0.944 11 C -0.513 4.513 12 H 0.039 0.961 13 C 0.032 3.968 14 N -0.902 5.902 15 Si 0.959 3.041 16 H -0.281 1.281 17 H -0.275 1.275 18 H -0.264 1.264 19 C 0.486 3.514 20 O -0.596 6.596 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.051 0.949 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 0.294 -12.003 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.017 4.017 4 N -0.348 5.348 5 C -0.041 4.041 6 C -0.098 4.098 7 N -0.260 5.260 8 C -0.099 4.099 9 C 0.095 3.905 10 H 0.074 0.926 11 C -0.552 4.552 12 H 0.057 0.943 13 C -0.170 4.170 14 N -0.539 5.539 15 Si 0.783 3.217 16 H -0.207 1.207 17 H -0.200 1.200 18 H -0.188 1.188 19 C 0.274 3.726 20 O -0.476 6.476 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.107 0.099 -11.422 14.007 hybrid contribution -0.442 0.516 1.110 1.301 sum -8.549 0.615 -10.312 13.409 Atomic orbital electron populations 1.21644 0.93190 1.02576 1.02381 1.21784 0.97689 0.96223 1.01263 1.21609 0.79495 0.97817 1.02734 1.47847 1.07309 1.73345 1.06349 1.22276 0.94482 1.03077 0.84221 1.22702 0.92026 0.98327 0.96787 1.62837 1.56133 1.05440 1.01580 1.22061 0.97981 0.88864 1.01041 1.19285 0.82791 0.98826 0.89620 0.92622 1.20617 1.08716 1.07245 1.18628 0.94292 1.25657 0.96167 0.96901 0.98296 1.70034 1.15990 1.26569 1.41323 0.85619 0.77454 0.79571 0.79024 1.20651 1.19957 1.18824 1.22378 0.93632 0.73805 0.82770 1.90500 1.68396 1.51834 1.36834 0.91572 0.93544 0.90505 0.90483 0.95381 0.93053 0.87774 0.90541 0.87727 0.86577 0.91793 0.97364 0.93261 0.90035 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.13 -3.54 6.25 30.60 0.19 -3.35 16 3 C 0.11 3.23 5.29 86.38 0.46 3.69 16 4 N -0.62 -22.56 2.63 -825.26 -2.17 -24.73 16 5 C 0.08 2.27 5.63 86.46 0.49 2.75 16 6 C 0.03 0.96 6.05 86.24 0.52 1.48 16 7 N -0.54 -23.47 5.17 -906.01 -4.68 -28.15 16 8 C 0.05 1.91 8.18 127.69 1.05 2.96 16 9 C 0.20 10.80 2.45 43.28 0.11 10.90 16 10 H 0.06 3.37 7.45 -2.39 -0.02 3.35 16 11 C -0.51 -29.85 6.10 25.60 0.16 -29.70 16 12 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 13 C 0.03 1.85 5.46 84.66 0.46 2.31 16 14 N -0.90 -53.43 12.87 21.45 0.28 -53.15 16 15 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 16 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.49 23.92 6.41 87.68 0.56 24.48 16 20 O -0.60 -34.03 15.75 -3.03 -0.05 -34.08 16 21 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.88 7.21 -2.38 -0.02 1.86 16 27 H 0.10 2.35 8.03 -2.38 -0.02 2.33 16 28 H 0.08 1.88 7.02 -2.39 -0.02 1.86 16 29 H 0.10 2.09 8.12 -2.39 -0.02 2.07 16 30 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 32 H 0.01 0.31 6.10 -2.39 -0.01 0.30 16 33 H 0.05 2.22 6.95 -2.38 -0.02 2.20 16 34 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 35 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -72.10 281.08 1.15 -70.95 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.05 Total: 8.44 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 4.70 Total: 13.37 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -6.58 Total: -106.04 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.10 1.15 -70.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219488528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.365 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds