Wall clock time and date at job start Mon Mar 30 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46943 * 2 1 4 4 N 1.46900 * 109.46853 * 180.02562 * 3 2 1 5 5 C 1.47186 * 110.99848 * 170.00116 * 4 3 2 6 6 H 1.09009 * 109.72096 * 287.48479 * 5 4 3 7 7 C 1.52999 * 109.59641 * 47.86052 * 5 4 3 8 8 C 1.52982 * 108.73148 * 167.63564 * 5 4 3 9 9 N 1.46010 * 110.04059 * 50.29459 * 8 5 4 10 10 C 1.33716 * 122.92610 * 341.83878 * 9 8 5 11 11 O 1.21284 * 118.62166 * 181.69324 * 10 9 8 12 12 C 1.46885 * 111.00465 * 47.09358 * 4 3 2 13 13 H 1.09004 * 109.31132 * 293.75711 * 12 4 3 14 14 C 1.50702 * 109.37246 * 53.49241 * 12 4 3 15 15 H 1.07997 * 119.99647 * 33.75572 * 14 12 4 16 16 C 1.37880 * 120.00301 * 213.75763 * 14 12 4 17 17 N 1.31516 * 119.99889 * 185.47273 * 16 14 12 18 18 Si 1.86801 * 119.99761 * 5.46875 * 16 14 12 19 19 H 1.48492 * 109.47019 * 93.51351 * 18 16 14 20 20 H 1.48503 * 109.46673 * 213.51562 * 18 16 14 21 21 H 1.48500 * 109.47221 * 333.51548 * 18 16 14 22 22 H 1.09003 * 109.47192 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47099 * 299.99459 * 1 2 3 24 24 H 1.08995 * 109.47706 * 59.99815 * 1 2 3 25 25 H 1.09006 * 109.47099 * 240.00541 * 2 1 3 26 26 H 1.08995 * 109.47706 * 120.00185 * 2 1 3 27 27 H 1.08999 * 109.46784 * 60.00727 * 3 2 1 28 28 H 1.08991 * 109.46996 * 300.00050 * 3 2 1 29 29 H 1.09001 * 109.47620 * 179.24514 * 7 5 4 30 30 H 1.09003 * 109.47030 * 59.24120 * 7 5 4 31 31 H 1.09001 * 109.47012 * 299.24986 * 7 5 4 32 32 H 1.09008 * 109.37605 * 170.46459 * 8 5 4 33 33 H 1.08996 * 109.37505 * 290.11690 * 8 5 4 34 34 H 0.96999 * 118.53306 * 161.81496 * 9 8 5 35 35 H 0.97004 * 119.99705 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0363 2.7958 -0.2392 6 1 3.8798 3.0731 -1.2818 7 6 3.3177 3.7944 0.6704 8 6 5.5337 2.8019 0.0741 9 7 6.1933 1.6957 -0.6138 10 6 5.5291 0.6397 -1.0952 11 8 6.1593 -0.2502 -1.6261 12 6 4.0350 0.5092 -1.0054 13 1 3.7774 -0.5108 -0.7197 14 6 3.4240 0.8223 -2.3469 15 1 3.1890 1.8435 -2.6081 16 6 3.1651 -0.1950 -3.2409 17 7 2.7330 0.0869 -4.4507 18 14 3.4280 -1.9735 -2.7337 19 1 2.1529 -2.5357 -2.2209 20 1 3.8795 -2.7616 -3.9086 21 1 4.4608 -2.0370 -1.6685 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6766 1.9564 -0.8899 29 1 3.7190 4.7937 0.5018 30 1 3.4709 3.5123 1.7121 31 1 2.2512 3.7884 0.4456 32 1 5.9687 3.7448 -0.2575 33 1 5.6786 2.6970 1.1493 34 1 7.1561 1.7286 -0.7269 35 1 2.5505 -0.6288 -5.0795 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219490312.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:32 Heat of formation + Delta-G solvation = -59.635120 kcal Electronic energy + Delta-G solvation = -17090.573781 eV Core-core repulsion = 14508.304169 eV Total energy + Delta-G solvation = -2582.269612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.36526 -38.70059 -36.36085 -34.72320 -33.71272 -32.45201 -29.22760 -27.16602 -26.53270 -24.52900 -22.47705 -21.79369 -20.24104 -18.64686 -18.05779 -17.53252 -16.71032 -16.29531 -15.98525 -15.73260 -15.23103 -14.63981 -14.54565 -14.03741 -13.90466 -13.57227 -13.11721 -13.07244 -12.90270 -12.63145 -12.52110 -12.15329 -11.94785 -11.87918 -11.72863 -11.52268 -11.17755 -11.07405 -10.41871 -9.90374 -9.07029 -8.46079 -6.51744 1.20873 1.29232 1.47937 1.90715 2.27294 2.54481 3.00342 3.15242 3.92674 4.07348 4.13835 4.30166 4.44261 4.47841 4.58321 4.65510 4.73394 4.89117 4.90487 4.95609 5.02360 5.08401 5.18508 5.24832 5.30323 5.45726 5.51433 5.57392 5.97919 6.00631 6.16417 6.31652 6.45109 6.62518 7.17585 7.47202 8.67859 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.015531 C = 0.010888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.908177 B = 1802.363297 C = 2570.977683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.078 3.922 4 N -0.520 5.520 5 C 0.050 3.950 6 H 0.024 0.976 7 C -0.132 4.132 8 C 0.125 3.875 9 N -0.721 5.721 10 C 0.518 3.482 11 O -0.611 6.611 12 C 0.167 3.833 13 H 0.070 0.930 14 C -0.524 4.524 15 H 0.049 0.951 16 C 0.047 3.953 17 N -0.925 5.925 18 Si 0.911 3.089 19 H -0.254 1.254 20 H -0.294 1.294 21 H -0.249 1.249 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.018 0.982 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.397 0.603 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 6.501 13.300 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C -0.050 4.050 4 N -0.246 5.246 5 C -0.059 4.059 6 H 0.042 0.958 7 C -0.189 4.189 8 C 0.001 3.999 9 N -0.372 5.372 10 C 0.306 3.694 11 O -0.493 6.493 12 C 0.056 3.944 13 H 0.088 0.912 14 C -0.563 4.563 15 H 0.067 0.933 16 C -0.155 4.155 17 N -0.563 5.563 18 Si 0.736 3.264 19 H -0.178 1.178 20 H -0.221 1.221 21 H -0.173 1.173 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.232 0.768 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.552 5.840 13.388 14.616 hybrid contribution 0.301 -0.695 -1.716 1.875 sum -0.251 5.146 11.672 12.758 Atomic orbital electron populations 1.21635 0.94325 1.01737 1.01959 1.21713 0.96970 0.97433 1.01321 1.21925 0.86507 0.96702 0.99841 1.63165 1.08915 1.06643 1.45841 1.22072 0.95017 0.90185 0.98615 0.95769 1.21781 1.00034 0.97572 0.99552 1.21715 0.91368 0.88960 0.97837 1.45591 1.11027 1.21687 1.58851 1.21413 0.91950 0.80764 0.75246 1.90574 1.69521 1.41996 1.47228 1.19722 0.87153 0.96226 0.91349 0.91242 1.21094 1.40797 0.94526 0.99837 0.93304 1.25592 0.93013 1.02614 0.94272 1.70004 1.45852 1.34366 1.06034 0.86286 0.79601 0.81322 0.79176 1.17843 1.22066 1.17272 0.92633 0.90455 0.94029 0.93983 0.91438 0.88627 0.96365 0.90032 0.90225 0.92377 0.88147 0.89144 0.76790 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.14 -4.96 5.19 30.60 0.16 -4.80 16 3 C 0.08 2.74 3.49 86.31 0.30 3.04 16 4 N -0.52 -19.75 4.71 -854.82 -4.03 -23.78 16 5 C 0.05 1.61 2.45 44.85 0.11 1.72 16 6 H 0.02 0.97 6.43 -2.38 -0.02 0.96 16 7 C -0.13 -2.91 8.53 71.98 0.61 -2.30 16 8 C 0.12 3.38 6.70 86.47 0.58 3.96 16 9 N -0.72 -26.10 5.52 -466.09 -2.57 -28.68 16 10 C 0.52 24.85 7.04 87.68 0.62 25.47 16 11 O -0.61 -33.97 16.17 -3.04 -0.05 -34.02 16 12 C 0.17 7.97 1.43 43.29 0.06 8.03 16 13 H 0.07 3.51 3.86 -2.38 -0.01 3.50 16 14 C -0.52 -29.16 6.37 25.60 0.16 -29.00 16 15 H 0.05 2.97 6.65 -2.91 -0.02 2.95 16 16 C 0.05 2.77 5.30 84.66 0.45 3.22 16 17 N -0.92 -57.52 13.96 21.45 0.30 -57.22 16 18 Si 0.91 47.28 24.86 68.60 1.71 48.98 16 19 H -0.25 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -15.46 7.11 99.48 0.71 -14.76 16 21 H -0.25 -13.22 5.57 99.48 0.55 -12.67 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.86 3.73 -2.38 -0.01 1.85 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.10 2.66 6.90 -2.39 -0.02 2.65 16 28 H 0.02 0.74 7.32 -2.39 -0.02 0.72 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.34 6.60 -2.39 -0.02 1.32 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.09 2.02 8.11 -2.39 -0.02 2.00 16 34 H 0.40 12.58 8.84 -92.71 -0.82 11.76 16 35 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -72.21 265.15 -0.76 -72.97 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.12 Total: 15.79 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 3.77 Total: 5.95 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -6.30 Total: -109.68 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.05 Total: -34.02 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.71 Total: 48.98 kcal Total: -72.21 -0.76 -72.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219490312.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.333 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds