Wall clock time and date at job start Mon Mar 30 2020 02:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47306 * 2 1 4 4 N 1.46898 * 109.46770 * 179.97438 * 3 2 1 5 5 C 1.47191 * 110.99790 * 66.04995 * 4 3 2 6 6 C 1.52986 * 108.73045 * 167.62953 * 5 4 3 7 7 N 1.46009 * 110.03978 * 50.29050 * 6 5 4 8 8 C 1.46498 * 118.53476 * 161.81812 * 7 6 5 9 9 C 1.33714 * 122.92782 * 341.84278 * 7 6 5 10 10 O 1.21281 * 118.62231 * 181.68447 * 9 7 6 11 11 C 1.46898 * 111.00401 * 303.15855 * 4 3 2 12 12 H 1.08996 * 109.38612 * 53.61294 * 11 4 3 13 13 C 1.50700 * 109.38471 * 293.82109 * 11 4 3 14 14 H 1.08004 * 119.99944 * 359.97438 * 13 11 4 15 15 C 1.37875 * 119.99850 * 180.02562 * 13 11 4 16 16 N 1.31511 * 120.00418 * 359.97438 * 15 13 11 17 17 Si 1.86807 * 119.99956 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46701 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.46956 * 119.99742 * 17 15 13 20 20 H 1.48502 * 109.47144 * 240.00167 * 17 15 13 21 21 H 1.09002 * 109.46785 * 299.99825 * 1 2 3 22 22 H 1.08997 * 109.47168 * 59.99553 * 1 2 3 23 23 H 1.09002 * 109.47565 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46785 * 240.00175 * 2 1 3 25 25 H 1.08997 * 109.47168 * 120.00447 * 2 1 3 26 26 H 1.08994 * 109.46750 * 60.00457 * 3 2 1 27 27 H 1.08995 * 109.46955 * 299.99999 * 3 2 1 28 28 H 1.09000 * 109.59624 * 47.85804 * 5 4 3 29 29 H 1.08997 * 109.59811 * 287.40405 * 5 4 3 30 30 H 1.08997 * 109.37667 * 170.46337 * 6 5 4 31 31 H 1.09004 * 109.37708 * 290.11907 * 6 5 4 32 32 H 1.09000 * 109.47417 * 90.00399 * 8 7 6 33 33 H 1.09007 * 109.46986 * 210.00093 * 8 7 6 34 34 H 1.09000 * 109.47513 * 329.99663 * 8 7 6 35 35 H 0.97003 * 120.00624 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0370 0.8843 -1.2549 6 6 5.5343 1.1875 -1.3360 7 7 6.1937 0.7873 -0.0963 8 6 7.6479 0.6102 -0.1027 9 6 5.5293 0.5748 1.0445 10 8 6.1593 0.2747 2.0364 11 6 4.0350 0.6924 1.1490 12 1 3.5952 -0.3048 1.1620 13 6 3.6778 1.4134 2.4233 14 1 3.1172 2.3356 2.3829 15 6 4.0677 0.8962 3.6404 16 7 4.7509 -0.2265 3.6895 17 14 3.6243 1.7895 5.2200 18 1 2.8584 3.0194 4.8947 19 1 2.7962 0.9016 6.0750 20 1 4.8665 2.1579 5.9457 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6768 1.9562 0.8900 27 1 1.6767 1.9563 -0.8899 28 1 3.5251 1.3413 -2.1018 29 1 3.8811 -0.1944 -1.2696 30 1 5.9697 0.6383 -2.1708 31 1 5.6788 2.2563 -1.4938 32 1 8.1301 1.5545 0.1501 33 1 7.9249 -0.1470 0.6308 34 1 7.9708 0.2913 -1.0938 35 1 5.0248 -0.5906 4.5459 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219491562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:38 Heat of formation + Delta-G solvation = -28.765717 kcal Electronic energy + Delta-G solvation = -16912.943551 eV Core-core repulsion = 14332.012537 eV Total energy + Delta-G solvation = -2580.931014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05703 -38.32799 -36.45377 -34.52978 -33.39459 -30.81319 -29.42983 -27.19477 -26.18930 -24.20151 -23.72550 -21.67709 -19.25798 -18.49251 -17.58707 -17.21941 -16.43185 -16.14545 -15.56343 -15.41636 -15.29522 -14.90628 -14.16568 -13.88408 -13.50690 -13.33937 -13.12137 -12.96377 -12.79083 -12.75833 -12.54657 -12.29725 -12.19307 -12.11021 -11.68322 -11.28144 -11.22574 -10.52447 -9.96428 -9.30839 -8.95539 -7.97542 -6.11041 1.37760 1.40815 1.51881 2.27316 2.49640 2.52148 3.25919 3.35491 4.06929 4.15016 4.17667 4.28299 4.43133 4.50189 4.54696 4.64830 4.70212 4.79948 4.86119 4.92964 5.00317 5.05013 5.11448 5.22345 5.30231 5.43013 5.52905 5.68677 5.86068 6.00677 6.29385 6.61681 6.76366 7.04154 7.51375 7.96741 9.01760 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.014836 C = 0.009078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.984275 B = 1886.806467 C = 3083.543678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.156 4.156 3 C 0.069 3.931 4 N -0.539 5.539 5 C 0.032 3.968 6 C 0.123 3.877 7 N -0.638 5.638 8 C 0.088 3.912 9 C 0.492 3.508 10 O -0.536 6.536 11 C 0.218 3.782 12 H 0.005 0.995 13 C -0.539 4.539 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.856 5.856 17 Si 0.954 3.046 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.292 1.292 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.032 0.968 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.027 0.973 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 1.835 -12.888 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C -0.059 4.059 4 N -0.264 5.264 5 C -0.096 4.096 6 C 0.000 4.000 7 N -0.377 5.377 8 C -0.055 4.055 9 C 0.280 3.720 10 O -0.409 6.409 11 C 0.108 3.892 12 H 0.022 0.978 13 C -0.577 4.577 14 H 0.079 0.921 15 C -0.185 4.185 16 N -0.491 5.491 17 Si 0.779 3.221 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.218 1.218 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.702 2.025 -12.178 12.637 hybrid contribution -0.053 -0.698 1.266 1.447 sum -2.754 1.327 -10.912 11.332 Atomic orbital electron populations 1.21605 0.93800 1.01755 1.02243 1.22075 0.97918 0.98996 1.00563 1.22118 0.86126 0.95381 1.02258 1.62680 1.08665 1.53228 1.01781 1.22586 0.95284 0.97787 0.93968 1.21605 0.92130 1.00715 0.85532 1.48034 1.08018 1.70504 1.11098 1.21516 0.80753 1.00526 1.02724 1.21963 0.92271 0.75609 0.82115 1.90700 1.68345 1.46333 1.35530 1.19077 0.86740 0.92940 0.90455 0.97839 1.20888 1.37729 1.09492 0.89628 0.92067 1.25769 0.94497 0.95936 1.02330 1.70440 1.34061 1.20053 1.24533 0.85587 0.77493 0.79156 0.79835 1.18499 1.20177 1.21832 0.93331 0.90761 0.92679 0.91960 0.94949 0.92336 0.88805 0.86207 0.95458 0.87985 0.91342 0.93927 0.94039 0.88173 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.16 -5.22 5.22 30.60 0.16 -5.06 16 3 C 0.07 2.40 5.11 86.30 0.44 2.84 16 4 N -0.54 -21.83 4.68 -879.91 -4.11 -25.94 16 5 C 0.03 0.98 4.98 86.24 0.43 1.41 16 6 C 0.12 3.64 6.62 86.47 0.57 4.22 16 7 N -0.64 -26.24 3.23 -850.20 -2.74 -28.98 16 8 C 0.09 3.05 10.29 127.77 1.32 4.36 16 9 C 0.49 26.37 7.11 87.68 0.62 27.00 16 10 O -0.54 -33.66 12.24 -3.03 -0.04 -33.70 16 11 C 0.22 11.38 1.65 43.28 0.07 11.45 16 12 H 0.00 0.26 5.89 -2.39 -0.01 0.25 16 13 C -0.54 -31.18 7.98 25.60 0.20 -30.97 16 14 H 0.06 3.50 7.10 -2.91 -0.02 3.48 16 15 C 0.02 1.19 4.97 84.65 0.42 1.61 16 16 N -0.86 -54.56 10.23 21.45 0.22 -54.34 16 17 Si 0.95 46.92 29.54 68.60 2.03 48.94 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.89 6.85 -2.39 -0.02 1.87 16 25 H 0.03 1.38 6.22 -2.39 -0.01 1.36 16 26 H 0.06 2.32 6.95 -2.39 -0.02 2.30 16 27 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 28 H 0.12 2.69 7.95 -2.39 -0.02 2.67 16 29 H 0.03 0.88 7.07 -2.39 -0.02 0.87 16 30 H 0.10 2.19 7.98 -2.39 -0.02 2.17 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.67 7.26 -2.38 -0.02 1.65 16 34 H 0.10 2.46 7.92 -2.39 -0.02 2.44 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -75.43 273.29 1.36 -74.07 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.06 Total: 5.95 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 4.95 Total: 14.00 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -6.64 Total: -109.26 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.04 Total: -33.70 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.43 1.36 -74.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219491562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.305 kcal (2) G-P(sol) polarization free energy of solvation -75.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds