Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47565 * 2 1 4 4 N 1.46905 * 109.46829 * 120.00035 * 2 1 3 5 5 C 1.47188 * 110.99744 * 201.62499 * 4 2 1 6 6 C 1.52988 * 108.73149 * 305.62877 * 5 4 2 7 7 N 1.46006 * 110.04328 * 309.71273 * 6 5 4 8 8 C 1.46495 * 118.53510 * 198.13572 * 7 6 5 9 9 C 1.33711 * 122.92481 * 18.41178 * 7 6 5 10 10 O 1.21285 * 118.62427 * 178.05820 * 9 7 6 11 11 C 1.46903 * 111.00117 * 78.73372 * 4 2 1 12 12 H 1.08995 * 109.38112 * 193.11823 * 11 4 2 13 13 C 1.50691 * 109.38535 * 312.91076 * 11 4 2 14 14 H 1.08003 * 120.00296 * 83.73687 * 13 11 4 15 15 C 1.37877 * 120.00451 * 263.73782 * 13 11 4 16 16 N 1.31508 * 120.00799 * 185.58831 * 15 13 11 17 17 Si 1.86802 * 119.99669 * 5.59006 * 15 13 11 18 18 H 1.48495 * 109.47434 * 84.57353 * 17 15 13 19 19 H 1.48498 * 109.47380 * 204.57976 * 17 15 13 20 20 H 1.48507 * 109.46795 * 324.57952 * 17 15 13 21 21 H 1.09002 * 109.47367 * 290.41339 * 1 2 3 22 22 H 1.09004 * 109.47393 * 50.41163 * 1 2 3 23 23 H 1.09000 * 109.47258 * 170.41139 * 1 2 3 24 24 H 1.09001 * 109.46920 * 239.99530 * 2 1 3 25 25 H 1.09004 * 109.46916 * 63.61413 * 3 2 1 26 26 H 1.08994 * 109.47351 * 183.61736 * 3 2 1 27 27 H 1.09001 * 109.46878 * 303.62136 * 3 2 1 28 28 H 1.08998 * 109.59618 * 185.85571 * 5 4 2 29 29 H 1.08997 * 109.72260 * 65.47646 * 5 4 2 30 30 H 1.08998 * 109.37415 * 189.52871 * 6 5 4 31 31 H 1.09005 * 109.37128 * 69.88845 * 6 5 4 32 32 H 1.09001 * 109.47201 * 89.99830 * 8 7 6 33 33 H 1.09004 * 109.47027 * 209.99295 * 8 7 6 34 34 H 1.08997 * 109.47459 * 329.99977 * 8 7 6 35 35 H 0.97000 * 120.00523 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 3.3997 -0.2897 1.5146 6 6 4.2720 -0.5162 0.2784 7 7 4.0701 -1.8678 -0.2357 8 6 5.0741 -2.4285 -1.1433 9 6 3.0070 -2.6144 0.0806 10 8 2.8997 -3.7141 -0.4196 11 6 1.9424 -2.1502 1.0342 12 1 2.0853 -2.6320 2.0014 13 6 0.5884 -2.5204 0.4860 14 1 0.4051 -2.4738 -0.5773 15 6 -0.4165 -2.9188 1.3419 16 7 -1.5618 -3.3466 0.8575 17 14 -0.1512 -2.8506 3.1897 18 1 -0.4549 -1.4834 3.6834 19 1 -1.0493 -3.8281 3.8552 20 1 1.2620 -3.1861 3.4995 21 1 -0.3634 0.3584 0.9631 22 1 -0.3634 0.6549 -0.7920 23 1 -0.3634 -1.0133 -0.1712 24 1 1.8932 -0.5139 -0.8900 25 1 1.7306 1.9373 0.9207 26 1 3.1280 1.4431 -0.0648 27 1 1.6247 1.9747 -0.8558 28 1 3.7759 -0.8907 2.3425 29 1 3.4215 0.7649 1.7891 30 1 5.3202 -0.3839 0.5463 31 1 4.0033 0.2074 -0.4912 32 1 5.8363 -2.9501 -0.5643 33 1 4.5948 -3.1290 -1.8272 34 1 5.5383 -1.6239 -1.7135 35 1 -2.2689 -3.6265 1.4597 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219491668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = -1.188674 kcal Electronic energy + Delta-G solvation = -17335.684010 eV Core-core repulsion = 14755.948826 eV Total energy + Delta-G solvation = -2579.735184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21328 -37.06503 -34.94432 -32.68416 -31.53722 -29.98307 -27.06771 -26.07240 -25.81149 -22.79713 -22.19554 -19.91955 -17.51381 -17.17911 -16.11627 -16.08125 -15.35801 -14.79619 -14.20365 -13.89642 -13.75975 -12.76209 -12.68005 -12.36834 -12.11568 -11.79438 -11.75340 -11.54657 -11.46065 -11.17916 -10.92614 -10.68751 -10.43050 -10.29678 -9.94517 -9.77692 -9.19763 -9.08643 -8.46860 -8.14129 -7.30853 -6.14650 -4.10862 3.33167 3.39085 3.43464 3.56566 3.58834 4.40529 4.63332 5.09075 5.30247 5.37629 5.43848 5.50384 5.67153 5.75554 5.81084 5.86960 5.91583 6.00596 6.17055 6.18517 6.36116 6.50569 6.58336 6.75475 6.79834 6.92615 7.16878 7.25914 7.80639 7.89850 8.00970 8.19649 8.42387 8.81911 9.07022 9.43436 10.95170 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.013627 C = 0.011355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.611996 B = 2054.256932 C = 2465.252882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 C -0.160 4.160 4 N -0.523 5.523 5 C 0.027 3.973 6 C 0.079 3.921 7 N -0.626 5.626 8 C 0.082 3.918 9 C 0.493 3.507 10 O -0.539 6.539 11 C 0.161 3.839 12 H 0.087 0.913 13 C -0.479 4.479 14 H 0.082 0.918 15 C 0.085 3.915 16 N -0.884 5.884 17 Si 0.890 3.110 18 H -0.268 1.268 19 H -0.293 1.293 20 H -0.269 1.269 21 H 0.044 0.956 22 H 0.021 0.979 23 H 0.124 0.876 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 8.563 0.566 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 C -0.217 4.217 4 N -0.248 5.248 5 C -0.102 4.102 6 C -0.046 4.046 7 N -0.363 5.363 8 C -0.062 4.062 9 C 0.281 3.719 10 O -0.414 6.414 11 C 0.053 3.947 12 H 0.104 0.896 13 C -0.517 4.517 14 H 0.100 0.900 15 C -0.121 4.121 16 N -0.520 5.520 17 Si 0.718 3.282 18 H -0.193 1.193 19 H -0.219 1.219 20 H -0.195 1.195 21 H 0.064 0.936 22 H 0.040 0.960 23 H 0.142 0.858 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.597 8.026 0.755 12.534 hybrid contribution 0.849 -0.024 0.247 0.884 sum 10.446 8.002 1.002 13.197 Atomic orbital electron populations 1.22504 0.93356 1.06378 0.99160 1.21259 0.97291 0.91550 0.90865 1.22301 1.00241 0.97516 1.01643 1.63410 1.16819 1.07891 1.36708 1.22606 0.89949 1.02017 0.95671 1.22279 1.00333 0.83818 0.98193 1.47727 1.23518 1.16204 1.48848 1.21511 0.91637 0.98923 0.94098 1.22283 0.81629 0.85105 0.82892 1.90580 1.76629 1.21612 1.52545 1.20181 0.94098 0.85206 0.95220 0.89608 1.20241 0.91842 1.44100 0.95558 0.90019 1.24917 0.94898 0.93290 0.98951 1.69883 1.04985 1.41480 1.35651 0.86667 0.77777 0.78338 0.85442 1.19291 1.21915 1.19496 0.93636 0.95954 0.85835 0.94867 0.92259 0.92857 0.93045 0.91004 0.89484 0.91897 0.91535 0.93705 0.90708 0.92423 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.73 37.15 0.32 -3.02 16 2 C 0.10 1.90 1.68 -67.71 -0.11 1.78 16 3 C -0.16 -2.37 7.81 37.16 0.29 -2.08 16 4 N -0.52 -10.56 4.83 -221.51 -1.07 -11.63 16 5 C 0.03 0.42 5.42 -3.67 -0.02 0.40 16 6 C 0.08 1.15 5.43 -4.31 -0.02 1.13 16 7 N -0.63 -11.58 3.10 -182.47 -0.57 -12.14 16 8 C 0.08 1.27 10.32 59.84 0.62 1.89 16 9 C 0.49 11.49 6.22 -11.67 -0.07 11.42 16 10 O -0.54 -14.55 15.74 5.55 0.09 -14.46 16 11 C 0.16 3.83 1.97 -70.23 -0.14 3.70 16 12 H 0.09 2.13 5.07 -51.93 -0.26 1.86 16 13 C -0.48 -13.02 4.79 -34.44 -0.16 -13.18 16 14 H 0.08 2.47 7.21 -52.48 -0.38 2.09 16 15 C 0.08 2.35 5.09 -17.82 -0.09 2.25 16 16 N -0.88 -25.87 13.96 55.43 0.77 -25.09 16 17 Si 0.89 21.54 27.58 -169.99 -4.69 16.85 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.33 6.05 56.52 0.34 -5.99 16 21 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.02 0.42 8.11 -51.93 -0.42 -0.01 16 23 H 0.12 3.13 3.96 -51.93 -0.21 2.93 16 24 H 0.03 0.71 6.70 -51.93 -0.35 0.36 16 25 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 26 H 0.05 0.69 4.60 -51.93 -0.24 0.45 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 29 H 0.09 1.15 6.71 -51.93 -0.35 0.80 16 30 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.07 0.94 5.25 -51.93 -0.27 0.66 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.31 7.20 -51.93 -0.37 0.93 16 34 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -31.03 262.75 -5.88 -36.92 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.99 Total: 1.31 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 0.61 Total: 4.29 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.86 Total: -48.86 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.69 Total: 16.85 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.03 -5.88 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219491668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.726 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds