Wall clock time and date at job start Mon Mar 30 2020 02:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47565 * 2 1 4 4 N 1.46905 * 109.46829 * 120.00035 * 2 1 3 5 5 C 1.47188 * 110.99744 * 201.62499 * 4 2 1 6 6 C 1.52988 * 108.73149 * 305.62877 * 5 4 2 7 7 N 1.46006 * 110.04328 * 309.71273 * 6 5 4 8 8 C 1.46495 * 118.53510 * 198.13572 * 7 6 5 9 9 C 1.33711 * 122.92481 * 18.41178 * 7 6 5 10 10 O 1.21285 * 118.62427 * 178.05820 * 9 7 6 11 11 C 1.46903 * 111.00117 * 78.73372 * 4 2 1 12 12 H 1.08995 * 109.38112 * 193.11823 * 11 4 2 13 13 C 1.50691 * 109.38535 * 312.91076 * 11 4 2 14 14 H 1.08003 * 120.00296 * 83.73687 * 13 11 4 15 15 C 1.37877 * 120.00451 * 263.73782 * 13 11 4 16 16 N 1.31508 * 120.00799 * 185.58831 * 15 13 11 17 17 Si 1.86802 * 119.99669 * 5.59006 * 15 13 11 18 18 H 1.48495 * 109.47434 * 84.57353 * 17 15 13 19 19 H 1.48498 * 109.47380 * 204.57976 * 17 15 13 20 20 H 1.48507 * 109.46795 * 324.57952 * 17 15 13 21 21 H 1.09002 * 109.47367 * 290.41339 * 1 2 3 22 22 H 1.09004 * 109.47393 * 50.41163 * 1 2 3 23 23 H 1.09000 * 109.47258 * 170.41139 * 1 2 3 24 24 H 1.09001 * 109.46920 * 239.99530 * 2 1 3 25 25 H 1.09004 * 109.46916 * 63.61413 * 3 2 1 26 26 H 1.08994 * 109.47351 * 183.61736 * 3 2 1 27 27 H 1.09001 * 109.46878 * 303.62136 * 3 2 1 28 28 H 1.08998 * 109.59618 * 185.85571 * 5 4 2 29 29 H 1.08997 * 109.72260 * 65.47646 * 5 4 2 30 30 H 1.08998 * 109.37415 * 189.52871 * 6 5 4 31 31 H 1.09005 * 109.37128 * 69.88845 * 6 5 4 32 32 H 1.09001 * 109.47201 * 89.99830 * 8 7 6 33 33 H 1.09004 * 109.47027 * 209.99295 * 8 7 6 34 34 H 1.08997 * 109.47459 * 329.99977 * 8 7 6 35 35 H 0.97000 * 120.00523 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6925 1.1995 5 6 3.3997 -0.2897 1.5146 6 6 4.2720 -0.5162 0.2784 7 7 4.0701 -1.8678 -0.2357 8 6 5.0741 -2.4285 -1.1433 9 6 3.0070 -2.6144 0.0806 10 8 2.8997 -3.7141 -0.4196 11 6 1.9424 -2.1502 1.0342 12 1 2.0853 -2.6320 2.0014 13 6 0.5884 -2.5204 0.4860 14 1 0.4051 -2.4738 -0.5773 15 6 -0.4165 -2.9188 1.3419 16 7 -1.5618 -3.3466 0.8575 17 14 -0.1512 -2.8506 3.1897 18 1 -0.4549 -1.4834 3.6834 19 1 -1.0493 -3.8281 3.8552 20 1 1.2620 -3.1861 3.4995 21 1 -0.3634 0.3584 0.9631 22 1 -0.3634 0.6549 -0.7920 23 1 -0.3634 -1.0133 -0.1712 24 1 1.8932 -0.5139 -0.8900 25 1 1.7306 1.9373 0.9207 26 1 3.1280 1.4431 -0.0648 27 1 1.6247 1.9747 -0.8558 28 1 3.7759 -0.8907 2.3425 29 1 3.4215 0.7649 1.7891 30 1 5.3202 -0.3839 0.5463 31 1 4.0033 0.2074 -0.4912 32 1 5.8363 -2.9501 -0.5643 33 1 4.5948 -3.1290 -1.8272 34 1 5.5383 -1.6239 -1.7135 35 1 -2.2689 -3.6265 1.4597 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219491668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:42 Heat of formation + Delta-G solvation = -25.678677 kcal Electronic energy + Delta-G solvation = -17336.745976 eV Core-core repulsion = 14755.948826 eV Total energy + Delta-G solvation = -2580.797150 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82637 -38.74851 -36.55652 -34.65512 -33.09687 -31.62795 -28.56582 -27.66661 -27.34130 -24.24989 -23.99019 -21.49871 -19.20730 -19.04325 -17.73914 -17.70909 -16.78408 -16.43262 -15.83987 -15.69099 -15.35239 -14.55999 -14.25346 -13.75978 -13.66867 -13.18187 -13.10526 -13.04909 -12.90987 -12.81265 -12.66961 -12.50289 -11.94120 -11.87870 -11.68605 -11.52409 -11.10107 -11.00046 -10.52147 -9.60926 -8.92208 -8.26691 -6.24927 1.37900 1.44137 1.49728 1.77656 2.11208 2.38556 2.94412 3.39073 3.86550 4.07859 4.15323 4.25004 4.32471 4.45876 4.52056 4.59274 4.67213 4.73641 4.76186 4.87673 4.96420 5.03981 5.08474 5.26132 5.27901 5.33405 5.52483 5.58861 6.01405 6.10405 6.23579 6.49763 6.62286 6.70351 7.25945 7.37826 8.87838 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.013627 C = 0.011355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.611996 B = 2054.256932 C = 2465.252882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.101 3.899 3 C -0.148 4.148 4 N -0.531 5.531 5 C 0.021 3.979 6 C 0.073 3.927 7 N -0.620 5.620 8 C 0.079 3.921 9 C 0.485 3.515 10 O -0.594 6.594 11 C 0.165 3.835 12 H 0.077 0.923 13 C -0.468 4.468 14 H 0.031 0.969 15 C 0.031 3.969 16 N -0.935 5.935 17 Si 0.947 3.053 18 H -0.255 1.255 19 H -0.294 1.294 20 H -0.256 1.256 21 H 0.040 0.960 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.008 0.992 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.253 11.476 1.810 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 C -0.205 4.205 4 N -0.256 5.256 5 C -0.107 4.107 6 C -0.050 4.050 7 N -0.354 5.354 8 C -0.064 4.064 9 C 0.273 3.727 10 O -0.473 6.473 11 C 0.055 3.945 12 H 0.094 0.906 13 C -0.507 4.507 14 H 0.049 0.951 15 C -0.169 4.169 16 N -0.574 5.574 17 Si 0.773 3.227 18 H -0.180 1.180 19 H -0.220 1.220 20 H -0.181 1.181 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.716 11.006 1.998 16.936 hybrid contribution -0.019 -0.860 -0.262 0.899 sum 12.697 10.146 1.736 16.346 Atomic orbital electron populations 1.22300 0.95581 1.03700 0.99388 1.21231 0.95618 0.94389 0.89505 1.22203 1.01960 0.93566 1.02790 1.63081 1.20430 1.05207 1.36896 1.22859 0.87062 1.04384 0.96365 1.22592 1.02899 0.81585 0.97935 1.47723 1.22255 1.17203 1.48189 1.21709 0.90855 1.00067 0.93721 1.22118 0.82872 0.84854 0.82866 1.90550 1.78073 1.23995 1.54706 1.19918 0.92357 0.87652 0.94540 0.90571 1.20176 0.93811 1.43515 0.93183 0.95098 1.25657 0.94516 0.93310 1.03385 1.70020 1.06211 1.44028 1.37139 0.85745 0.78181 0.78777 0.80019 1.17973 1.22020 1.18146 0.94083 0.94158 0.90592 0.97442 0.91219 0.89996 0.91893 0.90567 0.85544 0.87234 0.90009 0.91943 0.93624 0.88136 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.56 8.73 71.98 0.63 -5.94 16 2 C 0.10 3.73 1.68 44.91 0.08 3.80 16 3 C -0.15 -3.71 7.81 71.98 0.56 -3.15 16 4 N -0.53 -20.35 4.83 -854.74 -4.13 -24.48 16 5 C 0.02 0.57 5.42 86.24 0.47 1.03 16 6 C 0.07 1.74 5.43 86.47 0.47 2.21 16 7 N -0.62 -21.31 3.10 -850.20 -2.63 -23.95 16 8 C 0.08 2.23 10.32 127.77 1.32 3.55 16 9 C 0.48 22.72 6.22 87.69 0.55 23.26 16 10 O -0.59 -33.32 15.74 -3.05 -0.05 -33.37 16 11 C 0.17 7.89 1.97 43.28 0.09 7.97 16 12 H 0.08 3.76 5.07 -2.39 -0.01 3.74 16 13 C -0.47 -26.76 4.79 25.60 0.12 -26.64 16 14 H 0.03 2.03 7.21 -2.91 -0.02 2.01 16 15 C 0.03 1.80 5.09 84.66 0.43 2.23 16 16 N -0.93 -57.94 13.96 21.45 0.30 -57.64 16 17 Si 0.95 45.11 27.58 68.60 1.89 47.00 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.26 -11.55 6.05 99.48 0.60 -10.95 16 21 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.04 1.52 8.11 -2.39 -0.02 1.50 16 23 H 0.08 4.08 3.96 -2.39 -0.01 4.07 16 24 H 0.01 0.32 6.70 -2.39 -0.02 0.30 16 25 H 0.07 1.65 8.05 -2.38 -0.02 1.63 16 26 H 0.08 1.59 4.60 -2.39 -0.01 1.58 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 29 H 0.13 2.48 6.71 -2.39 -0.02 2.47 16 30 H 0.11 1.78 8.12 -2.39 -0.02 1.76 16 31 H 0.08 1.80 5.25 -2.38 -0.01 1.79 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 34 H 0.10 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -74.22 262.75 1.06 -73.16 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.98 Total: 10.94 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 4.71 Total: 8.34 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -6.46 Total: -106.07 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.37 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.89 Total: 47.00 kcal Total: -74.22 1.06 -73.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219491668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.485 kcal (2) G-P(sol) polarization free energy of solvation -74.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds