Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.46887 * 2 1 4 4 N 1.46903 * 109.46945 * 120.00479 * 2 1 3 5 5 C 1.47188 * 110.99870 * 297.88823 * 4 2 1 6 6 C 1.52982 * 108.72738 * 167.63960 * 5 4 2 7 7 N 1.46007 * 110.04238 * 50.29371 * 6 5 4 8 8 C 1.46499 * 118.53770 * 161.84337 * 7 6 5 9 9 C 1.33515 * 122.87037 * 341.86554 * 7 6 5 10 10 O 1.21284 * 118.46928 * 181.64257 * 9 7 6 11 11 C 1.46905 * 110.99405 * 174.99896 * 4 2 1 12 12 H 1.09002 * 109.38917 * 53.50702 * 11 4 2 13 13 C 1.50701 * 109.38681 * 293.71499 * 11 4 2 14 14 H 1.07999 * 119.99906 * 359.79301 * 13 11 4 15 15 C 1.37877 * 119.99949 * 179.79640 * 13 11 4 16 16 N 1.31515 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99937 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47043 * 90.00012 * 17 15 13 19 19 H 1.48499 * 109.47188 * 209.99685 * 17 15 13 20 20 H 1.48498 * 109.47167 * 330.00200 * 17 15 13 21 21 H 1.09008 * 109.47215 * 299.99575 * 1 2 3 22 22 H 1.09001 * 109.47640 * 59.99893 * 1 2 3 23 23 H 1.09000 * 109.47269 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46448 * 240.00141 * 2 1 3 25 25 H 1.08996 * 109.47700 * 300.00113 * 3 2 1 26 26 H 1.09000 * 109.47461 * 60.00762 * 3 2 1 27 27 H 1.09004 * 109.46834 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.59199 * 287.41168 * 5 4 2 29 29 H 1.08999 * 109.59508 * 47.86191 * 5 4 2 30 30 H 1.09003 * 109.37466 * 170.46629 * 6 5 4 31 31 H 1.08994 * 109.37402 * 290.11437 * 6 5 4 32 32 H 1.08991 * 109.47475 * 89.99291 * 8 7 6 33 33 H 1.09005 * 109.47241 * 209.99845 * 8 7 6 34 34 H 1.09008 * 109.46979 * 329.99220 * 8 7 6 35 35 H 0.97001 * 120.00011 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5894 0.0033 2.4229 6 6 1.8515 -0.9073 3.6239 7 7 3.2234 -1.4052 3.5845 8 6 3.8060 -1.9497 4.8134 9 6 3.9700 -1.3854 2.4777 10 8 5.0902 -1.8475 2.5276 11 6 3.4832 -0.8166 1.1750 12 1 3.9272 0.1670 1.0213 13 6 3.8891 -1.7303 0.0474 14 1 3.1352 -2.1762 -0.5843 15 6 5.2230 -1.9970 -0.1777 16 7 6.1411 -1.4544 0.5919 17 14 5.7261 -3.1301 -1.5749 18 1 5.9332 -2.3315 -2.8098 19 1 6.9885 -3.8259 -1.2179 20 1 4.6565 -4.1336 -1.8080 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4424 0.0005 28 1 2.1550 0.9284 2.5353 29 1 0.5248 0.2286 2.3603 30 1 1.6973 -0.3447 4.5447 31 1 1.1601 -1.7495 3.5967 32 1 3.6041 -3.0193 4.8684 33 1 4.8832 -1.7830 4.8098 34 1 3.3642 -1.4517 5.6766 35 1 7.0795 -1.6417 0.4333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219491731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = 0.363284 kcal Electronic energy + Delta-G solvation = -17067.012503 eV Core-core repulsion = 14487.344617 eV Total energy + Delta-G solvation = -2579.667886 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39523 -36.89856 -34.65535 -32.53219 -31.07631 -29.19330 -26.72143 -26.60078 -25.31363 -22.90686 -22.30314 -19.19911 -17.53007 -16.54871 -15.94747 -15.51148 -14.58865 -14.29192 -14.17088 -13.66535 -13.53244 -13.23304 -12.50091 -12.21295 -11.84326 -11.74272 -11.65117 -11.44966 -11.29864 -11.12743 -10.78324 -10.68873 -10.61256 -10.39382 -9.96225 -9.74404 -9.25173 -8.37676 -7.92491 -7.61242 -7.32323 -5.80466 -3.88763 3.38348 3.45693 3.49066 4.09650 4.27637 4.56855 4.77504 5.42463 5.46451 5.51208 5.60784 5.69666 5.81856 5.83521 5.93359 6.00862 6.03165 6.14245 6.23448 6.28262 6.34748 6.44204 6.50253 6.62915 6.78442 6.92570 7.23639 7.37885 7.74596 7.94454 8.09637 8.42966 8.73937 9.06574 9.70171 9.90869 11.19776 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.013978 C = 0.009415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.270104 B = 2002.657337 C = 2973.393822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 C -0.183 4.183 4 N -0.521 5.521 5 C 0.030 3.970 6 C 0.131 3.869 7 N -0.636 5.636 8 C 0.088 3.912 9 C 0.505 3.495 10 O -0.484 6.484 11 C 0.215 3.785 12 H 0.032 0.968 13 C -0.531 4.531 14 H 0.067 0.933 15 C 0.073 3.927 16 N -0.822 5.822 17 Si 0.894 3.106 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 4.184 3.691 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.241 4.241 4 N -0.246 5.246 5 C -0.099 4.099 6 C 0.006 3.994 7 N -0.376 5.376 8 C -0.056 4.056 9 C 0.293 3.707 10 O -0.353 6.353 11 C 0.106 3.894 12 H 0.049 0.951 13 C -0.569 4.569 14 H 0.085 0.915 15 C -0.136 4.136 16 N -0.455 5.455 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.897 3.456 3.735 10.250 hybrid contribution 0.589 0.181 -0.484 0.784 sum -8.309 3.638 3.250 9.635 Atomic orbital electron populations 1.21896 0.95912 1.01729 1.00450 1.21591 0.93685 0.92073 0.95335 1.22441 1.02696 0.98381 1.00631 1.62781 1.14268 1.47709 0.99884 1.22452 1.00527 0.95244 0.91636 1.21211 0.84193 0.96926 0.97049 1.48057 1.13962 1.64994 1.10630 1.21370 1.00093 0.97517 0.86601 1.21894 0.85358 0.79378 0.84086 1.90733 1.18770 1.43075 1.82688 1.19369 0.81522 0.97174 0.91341 0.95071 1.20555 0.91762 1.31392 1.13220 0.91533 1.24959 0.96734 0.96046 0.95835 1.70238 1.00221 1.40954 1.34131 0.86587 0.78059 0.81075 0.82139 1.20820 1.21384 1.19900 0.93344 0.93092 0.92237 0.88667 0.93085 0.93574 0.91649 0.94915 0.90094 0.92530 0.92724 0.94342 0.91239 0.93150 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.06 37.16 0.34 -1.69 16 2 C 0.08 1.48 2.80 -67.72 -0.19 1.29 16 3 C -0.18 -3.07 8.50 37.15 0.32 -2.75 16 4 N -0.52 -10.77 4.45 -221.52 -0.99 -11.76 16 5 C 0.03 0.52 4.56 -3.68 -0.02 0.50 16 6 C 0.13 2.20 6.62 -4.32 -0.03 2.17 16 7 N -0.64 -13.51 3.22 -182.54 -0.59 -14.10 16 8 C 0.09 1.60 10.29 59.85 0.62 2.22 16 9 C 0.50 13.26 7.10 -11.76 -0.08 13.18 16 10 O -0.48 -14.59 12.26 5.55 0.07 -14.52 16 11 C 0.22 5.49 1.78 -70.23 -0.13 5.36 16 12 H 0.03 0.88 6.15 -51.93 -0.32 0.56 16 13 C -0.53 -14.91 7.86 -34.44 -0.27 -15.18 16 14 H 0.07 1.85 7.15 -52.49 -0.38 1.48 16 15 C 0.07 2.12 4.97 -17.82 -0.09 2.03 16 16 N -0.82 -25.06 10.26 55.43 0.57 -24.50 16 17 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 21 H 0.05 0.62 6.21 -51.92 -0.32 0.30 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.10 1.93 6.75 -51.93 -0.35 1.58 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.71 6.66 -51.93 -0.35 0.36 16 27 H 0.06 1.28 6.39 -51.93 -0.33 0.95 16 28 H 0.03 0.58 6.97 -51.93 -0.36 0.22 16 29 H 0.08 1.15 5.85 -51.93 -0.30 0.84 16 30 H 0.06 0.77 7.98 -51.93 -0.41 0.36 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.39 7.26 -51.93 -0.38 1.02 16 34 H 0.05 0.72 7.92 -51.92 -0.41 0.31 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 268.90 15.07 4.05 4.05 Total: -1.00 -32.63 268.90 -6.60 -39.23 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.16 Total: -2.72 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 0.47 Total: 7.11 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.00 Total: -50.35 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.63 -6.60 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219491731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.594 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds