Wall clock time and date at job start Mon Mar 30 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.46887 * 2 1 4 4 N 1.46903 * 109.46945 * 120.00479 * 2 1 3 5 5 C 1.47188 * 110.99870 * 297.88823 * 4 2 1 6 6 C 1.52982 * 108.72738 * 167.63960 * 5 4 2 7 7 N 1.46007 * 110.04238 * 50.29371 * 6 5 4 8 8 C 1.46499 * 118.53770 * 161.84337 * 7 6 5 9 9 C 1.33515 * 122.87037 * 341.86554 * 7 6 5 10 10 O 1.21284 * 118.46928 * 181.64257 * 9 7 6 11 11 C 1.46905 * 110.99405 * 174.99896 * 4 2 1 12 12 H 1.09002 * 109.38917 * 53.50702 * 11 4 2 13 13 C 1.50701 * 109.38681 * 293.71499 * 11 4 2 14 14 H 1.07999 * 119.99906 * 359.79301 * 13 11 4 15 15 C 1.37877 * 119.99949 * 179.79640 * 13 11 4 16 16 N 1.31515 * 120.00027 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99937 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47043 * 90.00012 * 17 15 13 19 19 H 1.48499 * 109.47188 * 209.99685 * 17 15 13 20 20 H 1.48498 * 109.47167 * 330.00200 * 17 15 13 21 21 H 1.09008 * 109.47215 * 299.99575 * 1 2 3 22 22 H 1.09001 * 109.47640 * 59.99893 * 1 2 3 23 23 H 1.09000 * 109.47269 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46448 * 240.00141 * 2 1 3 25 25 H 1.08996 * 109.47700 * 300.00113 * 3 2 1 26 26 H 1.09000 * 109.47461 * 60.00762 * 3 2 1 27 27 H 1.09004 * 109.46834 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.59199 * 287.41168 * 5 4 2 29 29 H 1.08999 * 109.59508 * 47.86191 * 5 4 2 30 30 H 1.09003 * 109.37466 * 170.46629 * 6 5 4 31 31 H 1.08994 * 109.37402 * 290.11437 * 6 5 4 32 32 H 1.08991 * 109.47475 * 89.99291 * 8 7 6 33 33 H 1.09005 * 109.47241 * 209.99845 * 8 7 6 34 34 H 1.09008 * 109.46979 * 329.99220 * 8 7 6 35 35 H 0.97001 * 120.00011 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5894 0.0033 2.4229 6 6 1.8515 -0.9073 3.6239 7 7 3.2234 -1.4052 3.5845 8 6 3.8060 -1.9497 4.8134 9 6 3.9700 -1.3854 2.4777 10 8 5.0902 -1.8475 2.5276 11 6 3.4832 -0.8166 1.1750 12 1 3.9272 0.1670 1.0213 13 6 3.8891 -1.7303 0.0474 14 1 3.1352 -2.1762 -0.5843 15 6 5.2230 -1.9970 -0.1777 16 7 6.1411 -1.4544 0.5919 17 14 5.7261 -3.1301 -1.5749 18 1 5.9332 -2.3315 -2.8098 19 1 6.9885 -3.8259 -1.2179 20 1 4.6565 -4.1336 -1.8080 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1299 1.4424 0.0005 28 1 2.1550 0.9284 2.5353 29 1 0.5248 0.2286 2.3603 30 1 1.6973 -0.3447 4.5447 31 1 1.1601 -1.7495 3.5967 32 1 3.6041 -3.0193 4.8684 33 1 4.8832 -1.7830 4.8098 34 1 3.3642 -1.4517 5.6766 35 1 7.0795 -1.6417 0.4333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219491731.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:45 Heat of formation + Delta-G solvation = -23.940022 kcal Electronic energy + Delta-G solvation = -17068.066374 eV Core-core repulsion = 14487.344617 eV Total energy + Delta-G solvation = -2580.721756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12675 -38.58043 -36.42634 -34.54492 -32.67038 -30.89750 -28.28801 -27.92796 -27.20071 -24.45734 -24.11608 -20.71872 -19.30410 -18.48023 -17.65413 -17.15788 -16.43298 -16.13739 -15.77504 -15.28818 -15.01355 -14.90738 -14.13477 -13.80299 -13.47952 -13.29650 -13.11137 -13.05099 -12.72980 -12.71594 -12.57155 -12.51178 -12.17161 -11.87458 -11.67196 -11.51673 -11.10681 -10.51773 -9.95646 -9.31078 -8.96918 -7.98122 -6.11771 1.37978 1.41526 1.50871 2.27416 2.49839 2.52121 3.22410 3.33017 4.08550 4.16634 4.17626 4.34416 4.47103 4.55139 4.61738 4.62194 4.69101 4.83646 4.89957 4.91197 4.97921 5.04926 5.10787 5.19097 5.31563 5.44696 5.58106 5.69858 5.86411 6.01722 6.33861 6.63830 6.76705 7.04230 7.50881 7.96852 9.01370 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.013978 C = 0.009415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.270104 B = 2002.657337 C = 2973.393822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 C -0.173 4.173 4 N -0.529 5.529 5 C 0.028 3.972 6 C 0.122 3.878 7 N -0.636 5.636 8 C 0.088 3.912 9 C 0.493 3.507 10 O -0.538 6.538 11 C 0.220 3.780 12 H -0.001 1.001 13 C -0.541 4.541 14 H 0.061 0.939 15 C 0.020 3.980 16 N -0.857 5.857 17 Si 0.955 3.045 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.268 1.268 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 4.613 4.375 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.033 4.033 3 C -0.232 4.232 4 N -0.255 5.255 5 C -0.100 4.100 6 C 0.000 4.000 7 N -0.374 5.374 8 C -0.055 4.055 9 C 0.281 3.719 10 O -0.411 6.411 11 C 0.109 3.891 12 H 0.016 0.984 13 C -0.579 4.579 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.491 5.491 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.193 1.193 21 H 0.088 0.912 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.118 0.882 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.848 3.904 4.437 13.240 hybrid contribution 1.372 0.095 -0.635 1.515 sum -10.475 3.999 3.803 11.840 Atomic orbital electron populations 1.21793 0.92099 1.02208 1.02610 1.21675 0.96504 0.91948 0.93172 1.22334 0.99994 0.98169 1.02696 1.62716 1.10845 1.49550 1.02353 1.22650 1.02643 0.94678 0.90036 1.21610 0.81560 0.97914 0.98931 1.47968 1.15429 1.63943 1.10105 1.21517 0.98779 0.98364 0.86843 1.21856 0.85203 0.79190 0.85607 1.90695 1.20996 1.45490 1.83907 1.19025 0.84567 0.94815 0.90669 0.98391 1.20860 0.91688 1.31299 1.14067 0.92092 1.25784 0.96988 0.97639 0.98153 1.70430 1.00016 1.42671 1.36013 0.85617 0.77336 0.79310 0.79659 1.19304 1.21824 1.19280 0.91158 0.90933 0.92593 0.91981 0.90745 0.91676 0.95714 0.95528 0.86031 0.88016 0.91340 0.93896 0.94017 0.88168 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.06 71.98 0.65 -2.59 16 2 C 0.08 2.65 2.80 44.91 0.13 2.78 16 3 C -0.17 -5.66 8.50 71.98 0.61 -5.05 16 4 N -0.53 -21.42 4.45 -854.76 -3.80 -25.23 16 5 C 0.03 0.87 4.56 86.24 0.39 1.26 16 6 C 0.12 3.65 6.62 86.47 0.57 4.22 16 7 N -0.64 -26.20 3.22 -850.52 -2.74 -28.94 16 8 C 0.09 3.05 10.29 127.77 1.32 4.37 16 9 C 0.49 26.49 7.10 87.71 0.62 27.12 16 10 O -0.54 -33.80 12.26 -3.04 -0.04 -33.84 16 11 C 0.22 11.53 1.78 43.28 0.08 11.61 16 12 H 0.00 -0.06 6.15 -2.39 -0.01 -0.07 16 13 C -0.54 -31.44 7.86 25.60 0.20 -31.24 16 14 H 0.06 3.50 7.15 -2.91 -0.02 3.48 16 15 C 0.02 1.17 4.97 84.65 0.42 1.59 16 16 N -0.86 -54.77 10.26 21.45 0.22 -54.55 16 17 Si 0.96 47.02 29.54 68.60 2.03 49.04 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 21 H 0.07 1.45 6.21 -2.38 -0.01 1.43 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 2.56 6.75 -2.39 -0.02 2.55 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.85 6.66 -2.39 -0.02 1.83 16 27 H 0.02 0.99 6.39 -2.39 -0.02 0.97 16 28 H 0.03 0.87 6.97 -2.39 -0.02 0.86 16 29 H 0.12 2.80 5.85 -2.39 -0.01 2.79 16 30 H 0.10 2.20 7.98 -2.39 -0.02 2.18 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.68 7.26 -2.38 -0.02 1.66 16 34 H 0.10 2.46 7.92 -2.38 -0.02 2.45 16 35 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.69 268.90 1.73 -73.97 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.07 Total: 5.47 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 4.99 Total: 14.07 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -6.32 Total: -108.72 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.04 Total: -33.84 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.04 kcal Total: -75.69 1.73 -73.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219491731.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.026 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds