Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47026 * 2 1 4 4 N 1.46898 * 109.47229 * 180.02562 * 3 2 1 5 5 C 1.45755 * 111.00094 * 44.17480 * 4 3 2 6 6 C 1.51689 * 113.93422 * 57.30157 * 5 4 3 7 7 C 1.53109 * 110.75546 * 66.77091 * 6 5 4 8 8 N 1.47245 * 108.40004 * 274.41051 * 7 6 5 9 9 C 1.33607 * 119.84825 * 69.99584 * 8 7 6 10 10 O 1.21281 * 119.88143 * 180.49251 * 9 8 7 11 11 C 1.46874 * 111.00094 * 170.00019 * 4 3 2 12 12 H 1.09001 * 109.73567 * 80.60053 * 11 4 3 13 13 C 1.50708 * 109.60186 * 201.00373 * 11 4 3 14 14 H 1.07999 * 119.99995 * 353.83908 * 13 11 4 15 15 C 1.37872 * 119.99797 * 173.83326 * 13 11 4 16 16 N 1.31514 * 119.99880 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 120.00297 * 0.02562 * 15 13 11 18 18 H 1.48496 * 109.47131 * 269.99490 * 17 15 13 19 19 H 1.48506 * 109.47016 * 149.99641 * 17 15 13 20 20 H 1.48495 * 109.47174 * 29.99947 * 17 15 13 21 21 H 1.09007 * 109.46766 * 299.99681 * 1 2 3 22 22 H 1.08996 * 109.47661 * 59.99859 * 1 2 3 23 23 H 1.09004 * 109.47094 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46900 * 240.00137 * 2 1 3 25 25 H 1.08995 * 109.47297 * 119.99743 * 2 1 3 26 26 H 1.09003 * 109.47168 * 60.00033 * 3 2 1 27 27 H 1.09005 * 109.46833 * 300.00536 * 3 2 1 28 28 H 1.08997 * 108.59167 * 296.15531 * 5 4 3 29 29 H 1.08996 * 108.59402 * 178.45499 * 5 4 3 30 30 H 1.08999 * 109.22411 * 306.43619 * 6 5 4 31 31 H 1.09001 * 109.21810 * 187.09941 * 6 5 4 32 32 H 1.08997 * 109.67690 * 154.68093 * 7 6 5 33 33 H 1.08997 * 109.70804 * 34.15604 * 7 6 5 34 34 H 0.97004 * 120.07175 * 249.96551 * 8 7 6 35 35 H 0.96998 * 120.00333 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0310 0.4668 -0.9492 6 6 3.5517 0.6754 -2.3732 7 6 4.1132 1.9781 -2.9493 8 7 3.2223 3.0824 -2.5560 9 6 3.1715 3.4735 -1.2794 10 8 2.4312 4.3771 -0.9533 11 6 4.0352 2.7929 -0.2387 12 1 4.0110 3.3661 0.6881 13 6 5.4535 2.7018 -0.7400 14 1 5.9534 1.7450 -0.7752 15 6 6.1129 3.8397 -1.1537 16 7 7.3505 3.7601 -1.5916 17 14 5.2486 5.4946 -1.0923 18 1 4.5461 5.7341 -2.3785 19 1 6.2500 6.5680 -0.8679 20 1 4.2628 5.4973 0.0182 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6765 1.9563 -0.8900 28 1 3.7305 -0.5292 -0.6240 29 1 5.1196 0.5189 -0.9378 30 1 2.4626 0.7190 -2.3825 31 1 3.8818 -0.1611 -2.9891 32 1 4.1560 1.9103 -4.0363 33 1 5.1132 2.1543 -2.5530 34 1 2.6737 3.5253 -3.2223 35 1 7.8146 4.5607 -1.8823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219492709.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -36.807748 kcal Electronic energy + Delta-G solvation = -17425.667510 eV Core-core repulsion = 14844.387767 eV Total energy + Delta-G solvation = -2581.279743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89232 -38.63388 -36.23674 -35.05231 -33.76701 -32.31626 -29.87194 -27.03275 -25.78168 -25.04878 -22.49357 -21.09550 -20.46249 -19.38639 -18.16626 -17.26667 -17.15350 -16.56450 -15.70931 -15.40701 -15.39750 -14.94598 -14.43426 -14.17445 -13.91045 -13.78229 -13.29211 -12.98737 -12.89758 -12.65954 -12.42652 -12.25851 -11.93505 -11.75991 -11.66975 -11.46240 -11.22460 -10.77255 -10.66897 -9.84066 -9.05799 -8.44209 -6.38548 1.15339 1.22109 1.47549 1.67078 2.19404 2.57583 2.90257 3.24252 3.94294 4.02329 4.13569 4.16767 4.30357 4.44393 4.54931 4.64937 4.76049 4.83400 4.92364 5.00171 5.04877 5.08900 5.15096 5.23104 5.31215 5.38545 5.41875 5.64314 5.90073 5.99759 6.29152 6.36224 6.57121 6.63903 7.16710 7.37315 8.65870 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.034718 B = 0.012144 C = 0.011003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.295927 B = 2305.072671 C = 2544.187419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.048 3.952 4 N -0.518 5.518 5 C 0.046 3.954 6 C -0.155 4.155 7 C 0.075 3.925 8 N -0.707 5.707 9 C 0.487 3.513 10 O -0.618 6.618 11 C 0.171 3.829 12 H 0.044 0.956 13 C -0.500 4.500 14 H 0.099 0.901 15 C 0.060 3.940 16 N -0.906 5.906 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.270 1.270 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.019 0.981 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.390 0.610 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.672 -9.560 -2.691 13.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.080 4.080 4 N -0.241 5.241 5 C -0.082 4.082 6 C -0.195 4.195 7 C -0.048 4.048 8 N -0.357 5.357 9 C 0.274 3.726 10 O -0.501 6.501 11 C 0.060 3.940 12 H 0.062 0.938 13 C -0.538 4.538 14 H 0.117 0.883 15 C -0.142 4.142 16 N -0.544 5.544 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.194 1.194 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.582 -9.260 -2.000 12.782 hybrid contribution -0.667 2.098 -1.053 2.440 sum -9.249 -7.162 -3.052 12.089 Atomic orbital electron populations 1.21715 0.94685 1.02577 1.01420 1.21662 0.96347 0.94061 1.03339 1.22297 0.87531 0.98845 0.99281 1.61753 1.06950 1.05220 1.50213 1.21879 1.01762 0.95107 0.89421 1.22239 1.00748 0.98142 0.98363 1.22633 0.97231 0.84737 1.00150 1.45967 1.44213 1.37237 1.08267 1.22433 0.81432 0.82536 0.86159 1.90579 1.43558 1.33808 1.82186 1.20109 0.93741 0.88250 0.91945 0.93828 1.21048 0.94799 0.96301 1.41623 0.88329 1.25084 0.94877 0.99374 0.94912 1.69861 1.11145 1.30139 1.43295 0.86789 0.78232 0.83896 0.79841 1.20881 1.21352 1.19443 0.93039 0.93551 0.90505 0.90361 0.90703 0.92912 0.96284 0.89246 0.90290 0.92039 0.87818 0.89058 0.87008 0.77480 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.91 71.98 0.71 -2.42 16 2 C -0.12 -2.95 4.91 30.59 0.15 -2.80 16 3 C 0.05 1.69 4.20 86.30 0.36 2.05 16 4 N -0.52 -20.29 4.95 -884.21 -4.38 -24.67 16 5 C 0.05 1.50 4.51 86.09 0.39 1.88 16 6 C -0.16 -4.45 5.04 30.20 0.15 -4.30 16 7 C 0.07 2.59 6.42 86.27 0.55 3.14 16 8 N -0.71 -28.22 5.17 -462.01 -2.39 -30.61 16 9 C 0.49 23.07 1.34 88.06 0.12 23.19 16 10 O -0.62 -33.21 15.94 -3.03 -0.05 -33.26 16 11 C 0.17 8.17 2.33 43.65 0.10 8.27 16 12 H 0.04 2.34 7.59 -2.39 -0.02 2.32 16 13 C -0.50 -25.22 5.51 25.60 0.14 -25.08 16 14 H 0.10 5.07 5.45 -2.91 -0.02 5.06 16 15 C 0.06 3.24 4.96 84.65 0.42 3.66 16 16 N -0.91 -50.59 13.96 21.45 0.30 -50.29 16 17 Si 0.88 46.37 24.46 68.60 1.68 48.05 16 18 H -0.28 -14.97 7.11 99.48 0.71 -14.26 16 19 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 20 H -0.27 -15.11 5.96 99.48 0.59 -14.51 16 21 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.08 1.81 5.32 -2.39 -0.01 1.80 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.02 0.73 5.30 -2.38 -0.01 0.72 16 28 H 0.09 2.41 6.41 -2.39 -0.02 2.39 16 29 H 0.08 2.94 5.20 -2.39 -0.01 2.93 16 30 H 0.06 1.73 5.83 -2.39 -0.01 1.71 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.11 4.78 4.16 -2.39 -0.01 4.77 16 34 H 0.39 14.12 8.92 -92.71 -0.83 13.29 16 35 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -63.68 253.26 -1.58 -65.25 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.16 Total: 17.94 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 3.10 Total: 7.59 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -6.47 Total: -105.57 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.68 Total: 48.05 kcal Total: -63.68 -1.58 -65.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219492709.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.447 kcal (2) G-P(sol) polarization free energy of solvation -63.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds