Wall clock time and date at job start Mon Mar 30 2020 02:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 N 1.46903 * 109.47106 * 239.99639 * 2 1 3 5 5 C 1.45761 * 110.99747 * 66.04721 * 4 2 1 6 6 C 1.51684 * 113.93616 * 192.72230 * 5 4 2 7 7 C 1.53106 * 110.76021 * 293.22803 * 6 5 4 8 8 N 1.47250 * 108.40131 * 85.59585 * 7 6 5 9 9 C 1.33608 * 119.84323 * 290.01492 * 8 7 6 10 10 O 1.21283 * 119.88489 * 179.47297 * 9 8 7 11 11 C 1.46876 * 111.00026 * 191.86773 * 4 2 1 12 12 H 1.09000 * 109.60200 * 29.45124 * 11 4 2 13 13 C 1.50703 * 109.59804 * 268.97196 * 11 4 2 14 14 H 1.08000 * 120.00383 * 5.43579 * 13 11 4 15 15 C 1.37882 * 119.99829 * 185.43988 * 13 11 4 16 16 N 1.31513 * 120.00169 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00018 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47367 * 90.00035 * 17 15 13 19 19 H 1.48497 * 109.47030 * 209.99861 * 17 15 13 20 20 H 1.48504 * 109.47140 * 329.99558 * 17 15 13 21 21 H 1.09005 * 109.47195 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46968 * 300.00265 * 1 2 3 23 23 H 1.08998 * 109.47107 * 60.00154 * 1 2 3 24 24 H 1.09007 * 109.47368 * 120.00413 * 2 1 3 25 25 H 1.08998 * 109.46940 * 299.99948 * 3 2 1 26 26 H 1.08999 * 109.46901 * 59.99687 * 3 2 1 27 27 H 1.09007 * 109.46829 * 180.02562 * 3 2 1 28 28 H 1.08995 * 108.58929 * 313.87552 * 5 4 2 29 29 H 1.09002 * 108.58722 * 71.57235 * 5 4 2 30 30 H 1.08999 * 109.22036 * 53.55651 * 6 5 4 31 31 H 1.08999 * 109.21786 * 172.94044 * 6 5 4 32 32 H 1.09001 * 109.67702 * 205.32162 * 7 6 5 33 33 H 1.08997 * 109.67636 * 325.86299 * 7 6 5 34 34 H 0.96990 * 120.07662 * 109.99209 * 8 7 6 35 35 H 0.96992 * 120.00177 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.6729 0.0461 -2.4072 6 6 1.8697 -0.7419 -3.6883 7 6 3.3553 -1.0230 -3.9297 8 7 3.7218 -2.2466 -3.1971 9 6 3.7697 -2.2330 -1.8619 10 8 4.0622 -3.2429 -1.2574 11 6 3.4603 -0.9613 -1.1008 12 1 3.7385 -1.0846 -0.0541 13 6 4.2308 0.1868 -1.7002 14 1 3.7091 1.0715 -2.0341 15 6 5.6019 0.1078 -1.8224 16 7 6.2372 -0.9698 -1.4163 17 14 6.5571 1.5311 -2.5646 18 1 6.9563 2.4739 -1.4890 19 1 7.7715 1.0118 -3.2433 20 1 5.7030 2.2392 -3.5518 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 0.6276 0.3477 -2.3419 29 1 2.2884 0.9445 -2.4538 30 1 1.3331 -1.6877 -3.6139 31 1 1.4728 -0.1691 -4.5264 32 1 3.5333 -1.1662 -4.9955 33 1 3.9510 -0.1855 -3.5668 34 1 3.9276 -3.0606 -3.6826 35 1 7.2018 -1.0253 -1.5019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219492967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:16 Heat of formation + Delta-G solvation = -22.039468 kcal Electronic energy + Delta-G solvation = -17430.167918 eV Core-core repulsion = 14849.528576 eV Total energy + Delta-G solvation = -2580.639342 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.37259 -36.83891 -34.52944 -32.87593 -31.21003 -29.96024 -27.01260 -26.27525 -24.69112 -23.47031 -20.87708 -18.88938 -18.48872 -16.94764 -16.01599 -15.51415 -14.67691 -14.56328 -13.90013 -13.54994 -13.08633 -12.79406 -12.61213 -12.24022 -11.90042 -11.77265 -11.61870 -11.39649 -11.09544 -10.97589 -10.81949 -10.55433 -10.46543 -10.05226 -9.91543 -9.66095 -9.52172 -8.71308 -8.29811 -7.68547 -7.12645 -6.17794 -4.26257 3.15679 3.23880 3.25269 4.20356 4.29053 4.72446 4.96534 5.20220 5.49421 5.70882 5.75677 5.82292 5.90585 6.11986 6.19882 6.22853 6.35878 6.42320 6.50729 6.52953 6.58334 6.69571 6.74878 6.81344 7.06899 7.10630 7.27310 7.66272 7.81230 8.06132 8.16649 8.28944 8.68815 8.84086 9.30285 9.92972 10.82491 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.014055 C = 0.011985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.310846 B = 1991.741996 C = 2335.782757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 C -0.184 4.184 4 N -0.534 5.534 5 C 0.056 3.944 6 C -0.126 4.126 7 C 0.090 3.910 8 N -0.721 5.721 9 C 0.571 3.429 10 O -0.588 6.588 11 C 0.202 3.798 12 H 0.061 0.939 13 C -0.555 4.555 14 H 0.081 0.919 15 C 0.069 3.931 16 N -0.859 5.859 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.270 1.270 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.375 0.625 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.701 4.687 -3.271 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 C -0.242 4.242 4 N -0.259 5.259 5 C -0.072 4.072 6 C -0.165 4.165 7 C -0.034 4.034 8 N -0.371 5.371 9 C 0.360 3.640 10 O -0.467 6.467 11 C 0.092 3.908 12 H 0.079 0.921 13 C -0.593 4.593 14 H 0.098 0.902 15 C -0.138 4.138 16 N -0.494 5.494 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.195 1.195 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.208 0.792 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.629 3.796 -2.844 8.983 hybrid contribution 1.206 1.214 -0.709 1.852 sum -6.422 5.010 -3.552 8.886 Atomic orbital electron populations 1.21879 0.95875 1.01537 1.00587 1.21511 0.93988 0.92960 0.93680 1.22579 1.04189 0.97358 1.00103 1.61438 1.16636 1.46777 1.01081 1.21514 0.98673 0.96969 0.90026 1.21712 0.97742 1.00378 0.96658 1.22309 0.95636 0.91436 0.93980 1.45619 1.71805 1.12463 1.07240 1.20787 0.72247 0.89470 0.81504 1.90502 1.50866 1.36576 1.68730 1.19549 0.83075 0.91198 0.96943 0.92128 1.21463 0.91946 1.02523 1.43332 0.90160 1.25078 0.97810 0.95685 0.95216 1.69967 1.09272 1.26423 1.43737 0.86669 0.79948 0.82458 0.79553 1.20374 1.21055 1.19496 0.92542 0.93227 0.93015 0.90821 0.93249 0.94153 0.89835 0.93213 0.92795 0.92354 0.92229 0.93311 0.85733 0.79215 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.14 37.16 0.34 -1.75 16 2 C 0.09 1.58 2.85 -67.71 -0.19 1.38 16 3 C -0.18 -3.15 7.93 37.16 0.29 -2.85 16 4 N -0.53 -10.98 4.30 -222.87 -0.96 -11.93 16 5 C 0.06 1.02 3.80 -5.11 -0.02 1.00 16 6 C -0.13 -2.15 5.86 -27.34 -0.16 -2.31 16 7 C 0.09 1.73 6.42 -3.58 -0.02 1.70 16 8 N -0.72 -15.99 5.32 -59.75 -0.32 -16.31 16 9 C 0.57 14.92 5.46 -11.16 -0.06 14.86 16 10 O -0.59 -17.59 17.92 5.56 0.10 -17.49 16 11 C 0.20 4.95 2.10 -69.68 -0.15 4.80 16 12 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 13 C -0.55 -13.27 3.00 -34.44 -0.10 -13.38 16 14 H 0.08 1.84 4.57 -52.49 -0.24 1.60 16 15 C 0.07 1.75 4.84 -17.82 -0.09 1.66 16 16 N -0.86 -23.99 12.13 55.43 0.67 -23.32 16 17 Si 0.89 19.49 29.53 -169.99 -5.02 14.47 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.73 6.29 -51.93 -0.33 0.40 16 24 H 0.07 1.40 7.73 -51.93 -0.40 1.00 16 25 H 0.05 0.81 6.59 -51.93 -0.34 0.47 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.66 6.07 -51.93 -0.32 1.35 16 28 H 0.05 0.81 5.88 -51.93 -0.31 0.50 16 29 H 0.05 1.03 4.05 -51.93 -0.21 0.82 16 30 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.13 2.68 4.16 -51.93 -0.22 2.46 16 34 H 0.37 7.73 8.92 -40.82 -0.36 7.37 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 260.77 15.07 3.93 3.93 Total: -1.00 -29.70 260.77 -6.53 -36.23 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.78 Total: 9.31 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.16 Total: 5.11 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.61 Total: -51.56 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.10 Total: -17.49 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.70 -6.53 -36.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219492967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.188 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds