Wall clock time and date at job start Mon Mar 30 2020 02:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47249 * 2 1 4 4 N 1.46903 * 109.47106 * 239.99639 * 2 1 3 5 5 C 1.45761 * 110.99747 * 66.04721 * 4 2 1 6 6 C 1.51684 * 113.93616 * 192.72230 * 5 4 2 7 7 C 1.53106 * 110.76021 * 293.22803 * 6 5 4 8 8 N 1.47250 * 108.40131 * 85.59585 * 7 6 5 9 9 C 1.33608 * 119.84323 * 290.01492 * 8 7 6 10 10 O 1.21283 * 119.88489 * 179.47297 * 9 8 7 11 11 C 1.46876 * 111.00026 * 191.86773 * 4 2 1 12 12 H 1.09000 * 109.60200 * 29.45124 * 11 4 2 13 13 C 1.50703 * 109.59804 * 268.97196 * 11 4 2 14 14 H 1.08000 * 120.00383 * 5.43579 * 13 11 4 15 15 C 1.37882 * 119.99829 * 185.43988 * 13 11 4 16 16 N 1.31513 * 120.00169 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00018 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47367 * 90.00035 * 17 15 13 19 19 H 1.48497 * 109.47030 * 209.99861 * 17 15 13 20 20 H 1.48504 * 109.47140 * 329.99558 * 17 15 13 21 21 H 1.09005 * 109.47195 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46968 * 300.00265 * 1 2 3 23 23 H 1.08998 * 109.47107 * 60.00154 * 1 2 3 24 24 H 1.09007 * 109.47368 * 120.00413 * 2 1 3 25 25 H 1.08998 * 109.46940 * 299.99948 * 3 2 1 26 26 H 1.08999 * 109.46901 * 59.99687 * 3 2 1 27 27 H 1.09007 * 109.46829 * 180.02562 * 3 2 1 28 28 H 1.08995 * 108.58929 * 313.87552 * 5 4 2 29 29 H 1.09002 * 108.58722 * 71.57235 * 5 4 2 30 30 H 1.08999 * 109.22036 * 53.55651 * 6 5 4 31 31 H 1.08999 * 109.21786 * 172.94044 * 6 5 4 32 32 H 1.09001 * 109.67702 * 205.32162 * 7 6 5 33 33 H 1.08997 * 109.67636 * 325.86299 * 7 6 5 34 34 H 0.96990 * 120.07662 * 109.99209 * 8 7 6 35 35 H 0.96992 * 120.00177 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 1.6729 0.0461 -2.4072 6 6 1.8697 -0.7419 -3.6883 7 6 3.3553 -1.0230 -3.9297 8 7 3.7218 -2.2466 -3.1971 9 6 3.7697 -2.2330 -1.8619 10 8 4.0622 -3.2429 -1.2574 11 6 3.4603 -0.9613 -1.1008 12 1 3.7385 -1.0846 -0.0541 13 6 4.2308 0.1868 -1.7002 14 1 3.7091 1.0715 -2.0341 15 6 5.6019 0.1078 -1.8224 16 7 6.2372 -0.9698 -1.4163 17 14 6.5571 1.5311 -2.5646 18 1 6.9563 2.4739 -1.4890 19 1 7.7715 1.0118 -3.2433 20 1 5.7030 2.2392 -3.5518 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 0.6276 0.3477 -2.3419 29 1 2.2884 0.9445 -2.4538 30 1 1.3331 -1.6877 -3.6139 31 1 1.4728 -0.1691 -4.5264 32 1 3.5333 -1.1662 -4.9955 33 1 3.9510 -0.1855 -3.5668 34 1 3.9276 -3.0606 -3.6826 35 1 7.2018 -1.0253 -1.5019 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219492967.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:15 Heat of formation + Delta-G solvation = -45.101445 kcal Electronic energy + Delta-G solvation = -17431.167961 eV Core-core repulsion = 14849.528576 eV Total energy + Delta-G solvation = -2581.639385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.12329 -38.66048 -36.26181 -34.77394 -32.77952 -31.67248 -28.70049 -27.69086 -26.31167 -25.30059 -22.39165 -20.68994 -20.09017 -18.81729 -17.79686 -17.18660 -16.44932 -16.27646 -15.48492 -15.27319 -14.75949 -14.46932 -14.19546 -13.74626 -13.60569 -13.44987 -13.18244 -12.82031 -12.74985 -12.61440 -12.32612 -12.22499 -11.99356 -11.65071 -11.47999 -11.22416 -11.18754 -10.65491 -10.29462 -9.52152 -8.80980 -8.09935 -6.25144 1.41711 1.44559 1.53134 2.32392 2.40772 2.95368 3.13781 3.51180 4.12269 4.31422 4.33297 4.45536 4.56815 4.71280 4.78615 4.83794 4.91292 5.00258 5.07663 5.14647 5.17831 5.21354 5.27648 5.32087 5.45858 5.63913 5.72663 5.74780 5.95727 6.29539 6.45113 6.66156 6.83795 6.92924 7.35118 7.95545 8.88076 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.023380 B = 0.014055 C = 0.011985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.310846 B = 1991.741996 C = 2335.782757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.079 3.921 3 C -0.173 4.173 4 N -0.543 5.543 5 C 0.052 3.948 6 C -0.121 4.121 7 C 0.083 3.917 8 N -0.713 5.713 9 C 0.561 3.439 10 O -0.641 6.641 11 C 0.209 3.791 12 H 0.010 0.990 13 C -0.531 4.531 14 H 0.097 0.903 15 C 0.019 3.981 16 N -0.909 5.909 17 Si 0.951 3.049 18 H -0.282 1.282 19 H -0.295 1.295 20 H -0.245 1.245 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.382 0.618 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 6.932 -5.174 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.029 4.029 3 C -0.232 4.232 4 N -0.268 5.268 5 C -0.075 4.075 6 C -0.160 4.160 7 C -0.039 4.039 8 N -0.362 5.362 9 C 0.351 3.649 10 O -0.525 6.525 11 C 0.098 3.902 12 H 0.028 0.972 13 C -0.570 4.570 14 H 0.115 0.885 15 C -0.183 4.183 16 N -0.547 5.547 17 Si 0.776 3.224 18 H -0.208 1.208 19 H -0.221 1.221 20 H -0.168 1.168 21 H 0.069 0.931 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.215 0.785 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.684 6.092 -4.795 12.405 hybrid contribution 1.764 0.512 -0.099 1.839 sum -7.920 6.604 -4.895 11.415 Atomic orbital electron populations 1.21780 0.92619 1.01802 1.02467 1.21646 0.96427 0.93000 0.91867 1.22431 1.01835 0.96980 1.01937 1.61430 1.13717 1.48492 1.03194 1.21671 1.00141 0.96416 0.89321 1.21717 0.95962 1.00688 0.97604 1.22481 0.96876 0.89112 0.95472 1.45615 1.70331 1.14017 1.06224 1.21123 0.71783 0.89202 0.82839 1.90454 1.53483 1.38373 1.70204 1.19204 0.85957 0.91087 0.93912 0.97194 1.21639 0.91688 1.02317 1.41310 0.88533 1.25849 0.98988 0.97681 0.95773 1.70159 1.09005 1.29092 1.46412 0.85656 0.78425 0.79389 0.78961 1.20767 1.22096 1.16836 0.93114 0.90887 0.91525 0.93325 0.91833 0.91832 0.93279 0.90316 0.93427 0.92922 0.87952 0.89630 0.87834 0.78466 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.14 71.98 0.66 -2.78 16 2 C 0.08 2.78 2.85 44.91 0.13 2.91 16 3 C -0.17 -5.62 7.93 71.98 0.57 -5.05 16 4 N -0.54 -21.93 4.30 -859.02 -3.70 -25.63 16 5 C 0.05 1.71 3.80 86.09 0.33 2.04 16 6 C -0.12 -3.67 5.86 30.20 0.18 -3.49 16 7 C 0.08 2.96 6.42 86.27 0.55 3.51 16 8 N -0.71 -31.37 5.32 -461.99 -2.46 -33.83 16 9 C 0.56 30.13 5.46 88.06 0.48 30.61 16 10 O -0.64 -40.28 17.92 -3.04 -0.05 -40.34 16 11 C 0.21 10.51 2.10 43.65 0.09 10.60 16 12 H 0.01 0.60 7.52 -2.39 -0.02 0.58 16 13 C -0.53 -25.38 3.00 25.60 0.08 -25.30 16 14 H 0.10 4.25 4.57 -2.91 -0.01 4.23 16 15 C 0.02 0.96 4.84 84.66 0.41 1.37 16 16 N -0.91 -52.66 12.13 21.45 0.26 -52.40 16 17 Si 0.95 39.78 29.53 68.60 2.03 41.80 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 21 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 22 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.07 1.58 6.29 -2.39 -0.02 1.56 16 24 H 0.05 1.92 7.73 -2.38 -0.02 1.90 16 25 H 0.06 1.87 6.59 -2.39 -0.02 1.85 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.93 6.07 -2.38 -0.01 1.91 16 28 H 0.08 2.18 5.88 -2.39 -0.01 2.16 16 29 H 0.05 1.65 4.05 -2.39 -0.01 1.64 16 30 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.10 4.21 4.16 -2.39 -0.01 4.20 16 34 H 0.38 15.65 8.92 -92.72 -0.83 14.83 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -67.66 260.77 -0.17 -67.83 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.28 Total: 28.17 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 3.47 Total: 14.41 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -5.90 Total: -111.86 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.05 Total: -40.34 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -67.66 -0.17 -67.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219492967.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.728 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds