Wall clock time and date at job start Mon Mar 30 2020 04:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.51510 * 1 3 3 H 1.10611 * 108.32434 * 2 1 4 4 C 1.53442 * 113.32699 * 118.85860 * 2 1 3 5 5 C 1.52027 * 111.82960 * 44.74033 * 4 2 1 6 6 N 1.44478 * 115.77861 * 69.76169 * 5 4 2 7 7 C 1.46126 * 113.53782 * 65.05514 * 6 5 4 8 8 C 1.45820 * 115.54074 * 292.02853 * 6 5 4 9 9 H 1.09092 * 110.31783 * 314.34012 * 8 6 5 10 10 C 1.51492 * 109.03888 * 196.16496 * 8 6 5 11 11 H 1.07999 * 120.00250 * 359.97438 * 10 8 6 12 12 C 1.37882 * 120.00298 * 179.97438 * 10 8 6 13 13 N 1.31519 * 119.99461 * 0.02562 * 12 10 8 14 14 Si 1.86789 * 120.00206 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47385 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47045 * 120.00319 * 14 12 10 17 17 H 1.48500 * 109.47532 * 240.00194 * 14 12 10 18 18 C 1.50836 * 110.38648 * 76.66377 * 8 6 5 19 19 O 1.22629 * 117.87479 * 116.92878 * 18 8 6 20 20 N 1.32736 * 124.62965 * 296.57869 * 18 8 6 21 21 C 1.47496 * 118.36790 * 180.94671 * 20 18 8 22 22 H 1.09001 * 109.47092 * 184.54808 * 1 2 3 23 23 H 1.09002 * 109.47168 * 304.54422 * 1 2 3 24 24 H 1.08995 * 109.47330 * 64.54432 * 1 2 3 25 25 H 1.08671 * 109.33175 * 166.82040 * 4 2 1 26 26 H 1.09395 * 108.48627 * 285.14053 * 4 2 1 27 27 H 1.10457 * 106.40210 * 188.90362 * 5 4 2 28 28 H 1.08420 * 110.52273 * 303.35555 * 5 4 2 29 29 H 1.08998 * 109.46782 * 56.04696 * 7 6 5 30 30 H 1.09007 * 109.47186 * 176.04481 * 7 6 5 31 31 H 1.09004 * 109.47283 * 296.04536 * 7 6 5 32 32 H 0.97005 * 119.99352 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.46969 * 270.12495 * 21 20 18 34 34 H 1.08995 * 109.46925 * 30.12514 * 21 20 18 35 35 H 1.08996 * 109.47316 * 150.12274 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5151 0.0000 0.0000 3 1 1.8629 1.0500 0.0000 4 6 2.1227 -0.6801 1.2340 5 6 1.4261 -1.9922 1.5568 6 7 1.6526 -3.0704 0.6222 7 6 3.0413 -3.5229 0.5787 8 6 1.0687 -2.8880 -0.7015 9 1 0.0410 -2.5320 -0.6165 10 6 1.0379 -4.2234 -1.4163 11 1 1.4169 -5.1075 -0.9254 12 6 0.5260 -4.3100 -2.6936 13 7 0.0649 -3.2332 -3.2916 14 14 0.4886 -5.9564 -3.5752 15 1 1.0622 -7.0037 -2.6924 16 1 -0.9150 -6.3065 -3.9106 17 1 1.2884 -5.8679 -4.8233 18 6 1.8955 -1.9211 -1.5118 19 8 2.4308 -2.3399 -2.5326 20 7 2.0810 -0.6437 -1.2025 21 6 2.9008 0.1844 -2.1067 22 1 -0.3633 -1.0244 0.0815 23 1 -0.3633 0.5827 0.8465 24 1 -0.3634 0.4417 -0.9278 25 1 3.1820 -0.8534 1.0642 26 1 2.0112 -0.0085 2.0903 27 1 1.8158 -2.3193 2.5372 28 1 0.3631 -1.8332 1.6992 29 1 3.3603 -3.8130 1.5798 30 1 3.1237 -4.3789 -0.0912 31 1 3.6757 -2.7146 0.2151 32 1 -0.2955 -3.2942 -4.1902 33 1 3.9449 0.1353 -1.7976 34 1 2.8059 -0.1881 -3.1266 35 1 2.5575 1.2180 -2.0640 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219493667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:52 Heat of formation + Delta-G solvation = -37.114926 kcal Electronic energy + Delta-G solvation = -17410.645535 eV Core-core repulsion = 14829.352472 eV Total energy + Delta-G solvation = -2581.293063 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17570 -37.84679 -36.88275 -34.35575 -32.90593 -30.67329 -28.90910 -27.63111 -27.23458 -24.82890 -24.02475 -20.80452 -19.58292 -18.33934 -17.58141 -16.98377 -16.70479 -16.11229 -15.98252 -15.14548 -15.07612 -14.62834 -14.39585 -13.83100 -13.38238 -13.27523 -13.22469 -13.11400 -12.83493 -12.66542 -12.61163 -12.47286 -12.20615 -11.90073 -11.75425 -11.42815 -11.02701 -10.45631 -10.32719 -9.38411 -8.72432 -8.10063 -6.15375 1.37534 1.41592 1.51611 2.24585 2.38478 2.50763 3.31009 3.41112 3.79244 3.97835 4.13470 4.31970 4.45448 4.52714 4.58020 4.61119 4.72806 4.75142 4.78727 4.93252 4.96483 5.00067 5.02666 5.11714 5.22151 5.36349 5.51807 5.72273 5.84959 6.04745 6.39680 6.72125 6.90406 7.10417 7.53485 7.94485 9.00369 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031185 B = 0.011875 C = 0.010497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.644712 B = 2357.361743 C = 2666.667413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 H 0.105 0.895 4 C -0.155 4.155 5 C 0.063 3.937 6 N -0.568 5.568 7 C 0.062 3.938 8 C 0.236 3.764 9 H 0.046 0.954 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.030 3.970 13 N -0.904 5.904 14 Si 0.955 3.045 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.295 1.295 18 C 0.491 3.509 19 O -0.583 6.583 20 N -0.628 5.628 21 C 0.087 3.913 22 H 0.045 0.955 23 H 0.105 0.895 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.254 0.746 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 8.768 10.701 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.123 0.877 4 C -0.195 4.195 5 C -0.065 4.065 6 N -0.292 5.292 7 C -0.085 4.085 8 C 0.126 3.874 9 H 0.063 0.937 10 C -0.556 4.556 11 H 0.076 0.924 12 C -0.172 4.172 13 N -0.542 5.542 14 Si 0.781 3.219 15 H -0.188 1.188 16 H -0.199 1.199 17 H -0.222 1.222 18 C 0.279 3.721 19 O -0.461 6.461 20 N -0.363 5.363 21 C -0.056 4.056 22 H 0.064 0.936 23 H 0.124 0.876 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.345 8.267 10.199 13.337 hybrid contribution 0.400 -0.197 -1.566 1.629 sum 2.745 8.070 8.633 12.132 Atomic orbital electron populations 1.21885 0.94487 1.02610 1.02824 1.21614 0.94169 0.97496 0.83510 0.87667 1.22416 0.99749 0.98935 0.98433 1.21503 1.01489 0.88317 0.95199 1.57944 1.19064 1.40088 1.12088 1.21793 0.86884 0.98347 1.01506 1.19048 0.92448 0.92598 0.83336 0.93663 1.21244 1.41070 0.93385 0.99944 0.92418 1.25572 0.94363 0.99426 0.97790 1.70032 1.41121 1.29559 1.13511 0.85562 0.77608 0.80563 0.78135 1.18769 1.19875 1.22179 1.22777 0.80524 0.82435 0.86410 1.90829 1.49989 1.77540 1.27711 1.48489 1.52244 1.09587 1.26007 1.21706 0.94706 0.95156 0.94031 0.93617 0.87600 0.93702 0.92751 0.86623 0.90171 0.90333 0.89659 0.93603 0.98288 0.93739 0.93148 0.94523 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 8.81 71.49 0.63 -4.02 16 2 C 0.13 3.92 2.79 44.43 0.12 4.05 16 3 H 0.11 2.33 7.64 -1.52 -0.01 2.32 16 4 C -0.16 -4.00 5.31 30.42 0.16 -3.84 16 5 C 0.06 1.91 4.75 86.44 0.41 2.32 16 6 N -0.57 -23.68 4.16 -916.01 -3.81 -27.49 16 7 C 0.06 2.49 8.83 127.84 1.13 3.62 16 8 C 0.24 12.15 1.75 43.92 0.08 12.23 16 9 H 0.05 2.50 5.92 -2.34 -0.01 2.49 16 10 C -0.52 -30.41 7.40 25.85 0.19 -30.21 16 11 H 0.06 3.38 6.99 -2.91 -0.02 3.36 16 12 C 0.03 1.77 4.65 84.66 0.39 2.16 16 13 N -0.90 -56.61 11.64 21.45 0.25 -56.36 16 14 Si 0.95 47.87 29.54 68.60 2.03 49.90 16 15 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 18 C 0.49 25.51 4.98 88.02 0.44 25.95 16 19 O -0.58 -36.20 13.36 -7.41 -0.10 -36.30 16 20 N -0.63 -25.56 2.77 -818.05 -2.27 -27.83 16 21 C 0.09 3.12 10.17 127.58 1.30 4.41 16 22 H 0.04 1.62 4.11 -2.39 -0.01 1.61 16 23 H 0.11 2.10 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.55 7.03 -2.56 -0.02 1.53 16 26 H 0.12 1.96 8.17 -2.18 -0.02 1.94 16 27 H 0.08 2.02 8.16 -1.60 -0.01 2.00 16 28 H 0.08 2.30 6.63 -2.69 -0.02 2.28 16 29 H 0.08 2.70 8.10 -2.39 -0.02 2.68 16 30 H 0.05 2.10 6.53 -2.38 -0.02 2.09 16 31 H 0.00 -0.06 6.59 -2.38 -0.02 -0.07 16 32 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.58 7.18 -2.39 -0.02 1.56 16 35 H 0.09 2.51 7.76 -2.39 -0.02 2.49 16 Total: -1.00 -76.08 265.79 2.03 -74.05 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.08 Total: 7.37 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 4.85 Total: 16.66 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -5.83 Total: -111.68 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.10 Total: -36.30 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -76.08 2.03 -74.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219493667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.930 kcal (2) G-P(sol) polarization free energy of solvation -76.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds