Wall clock time and date at job start Mon Mar 30 2020 04:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.47148 * 2 1 4 4 C 1.50698 * 109.47022 * 239.99448 * 2 1 3 5 5 H 1.08001 * 120.00146 * 240.00082 * 4 2 1 6 6 C 1.37882 * 120.00031 * 60.00116 * 4 2 1 7 7 N 1.31511 * 119.99783 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47238 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47043 * 119.99862 * 8 6 4 11 11 H 1.48500 * 109.47070 * 240.00217 * 8 6 4 12 12 N 1.46503 * 109.46770 * 119.99423 * 2 1 3 13 13 C 1.34765 * 120.00236 * 274.99731 * 12 2 1 14 14 O 1.21280 * 120.00218 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00365 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.35020 * 332.87757 * 15 13 12 17 17 C 1.54590 * 110.31136 * 210.72929 * 15 13 12 18 18 C 1.54938 * 103.08292 * 219.21280 * 17 15 13 19 19 N 1.48535 * 103.22613 * 37.32985 * 18 17 15 20 20 C 1.47908 * 105.81649 * 320.79049 * 19 18 17 21 21 H 1.08997 * 109.91686 * 265.77635 * 20 19 18 22 22 C 1.53003 * 109.91382 * 144.68624 * 20 19 18 23 23 H 1.09006 * 109.46641 * 300.00600 * 1 2 3 24 24 H 1.08998 * 109.46601 * 60.00290 * 1 2 3 25 25 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99730 * 180.02562 * 7 6 4 27 27 H 0.97005 * 119.99541 * 95.00529 * 12 2 1 28 28 H 1.09004 * 110.72360 * 100.76977 * 17 15 13 29 29 H 1.09000 * 110.72800 * 337.66766 * 17 15 13 30 30 H 1.09000 * 110.66334 * 155.75997 * 18 17 15 31 31 H 1.08998 * 110.66621 * 278.89310 * 18 17 15 32 32 H 1.00897 * 110.99826 * 200.27761 * 19 18 17 33 33 H 1.09000 * 109.47326 * 65.22420 * 22 20 19 34 34 H 1.09000 * 109.47069 * 185.23002 * 22 20 19 35 35 H 1.09003 * 109.47058 * 305.22507 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3225 -1.1199 -4.0079 9 1 3.1474 -2.2867 -3.6036 10 1 1.1678 -1.5870 -4.8163 11 1 3.1473 -0.1862 -4.8160 12 7 2.0183 -0.6905 1.1963 13 6 2.1471 -0.0181 2.3571 14 8 1.8583 1.1585 2.4116 15 6 2.6499 -0.7283 3.5876 16 1 2.4137 -1.7911 3.5350 17 6 2.0306 -0.1032 4.8586 18 6 3.2095 -0.1121 5.8640 19 7 4.3847 0.2043 5.0124 20 6 4.1715 -0.5257 3.7438 21 1 4.6777 -1.4903 3.7808 22 6 4.7072 0.2990 2.5717 23 1 -0.3633 0.5140 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7090 1.1611 -3.4845 27 1 2.2491 -1.6317 1.1527 28 1 1.2058 -0.7137 5.2261 29 1 1.6972 0.9161 4.6641 30 1 3.0701 0.6537 6.6270 31 1 3.3187 -1.0960 6.3201 32 1 5.2423 -0.0866 5.4573 33 1 5.7890 0.3974 2.6610 34 1 4.4639 -0.2012 1.6343 35 1 4.2500 1.2885 2.5846 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221619223.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:59 Heat of formation + Delta-G solvation = -68.074892 kcal Electronic energy + Delta-G solvation = -16282.677416 eV Core-core repulsion = 13700.041828 eV Total energy + Delta-G solvation = -2582.635588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.27107 -38.68020 -36.61165 -34.32044 -32.38477 -31.84873 -30.33908 -27.35945 -26.74558 -23.85850 -22.16389 -21.83940 -20.53582 -18.61907 -18.06747 -17.33956 -17.08836 -16.23102 -15.79335 -15.51185 -15.02077 -14.48914 -14.12527 -13.83994 -13.63231 -13.35240 -13.08581 -12.95222 -12.82667 -12.81667 -12.63132 -12.30092 -12.19409 -12.11492 -11.83781 -11.67025 -11.08971 -10.66963 -10.52443 -9.69738 -9.43160 -8.17504 -6.34991 1.44035 1.44842 1.57026 1.85582 2.35791 2.65128 3.12977 3.23890 3.65312 3.67316 4.02433 4.23734 4.35589 4.41458 4.54016 4.67048 4.73831 4.75563 4.90553 4.91564 5.01568 5.05714 5.10345 5.26065 5.34212 5.45306 5.63325 5.70268 5.85463 5.93386 6.10819 6.54563 6.73905 7.02253 7.33308 7.62098 8.89198 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.046515 B = 0.006744 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.809244 B = 4150.563820 C = 4458.306293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.006 1.006 4 C -0.543 4.543 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.706 5.706 13 C 0.515 3.485 14 O -0.598 6.598 15 C -0.117 4.117 16 H 0.122 0.878 17 C -0.116 4.116 18 C 0.050 3.950 19 N -0.684 5.684 20 C 0.092 3.908 21 H 0.089 0.911 22 C -0.147 4.147 23 H 0.009 0.991 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.352 0.648 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -8.440 13.469 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.012 0.988 4 C -0.581 4.581 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.355 5.355 13 C 0.302 3.698 14 O -0.480 6.480 15 C -0.139 4.139 16 H 0.140 0.860 17 C -0.154 4.154 18 C -0.079 4.079 19 N -0.315 5.315 20 C -0.018 4.018 21 H 0.107 0.893 22 C -0.205 4.205 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.317 -6.843 13.122 15.726 hybrid contribution 0.212 -1.034 -0.970 1.434 sum 5.529 -7.877 12.152 15.501 Atomic orbital electron populations 1.21901 0.98529 0.99421 0.99394 1.18290 0.90944 0.91788 0.82191 0.98794 1.21577 1.32376 1.13440 0.90750 0.90784 1.25831 0.94911 0.95587 1.02430 1.70071 1.37185 1.24047 1.24503 0.85282 0.78091 0.78517 0.78349 1.18218 1.20423 1.21057 1.46335 1.65321 1.14068 1.09747 1.20891 0.76507 0.86984 0.85402 1.90620 1.53053 1.18499 1.85782 1.22410 0.96966 1.01632 0.92883 0.86037 1.22515 0.98691 1.01360 0.92844 1.23011 0.88791 1.01118 0.94980 1.62881 1.05871 1.58703 1.04082 1.22025 0.92242 0.96474 0.91105 0.89335 1.21894 1.01507 0.99878 0.97177 0.97148 0.91629 0.93979 0.92604 0.76177 0.88820 0.92655 0.89378 0.91057 0.83067 0.91091 0.93137 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.34 2.56 44.25 0.11 14.45 16 3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 4 C -0.54 -28.94 8.73 25.60 0.22 -28.72 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 8 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.71 -29.55 4.63 -446.09 -2.07 -31.61 16 13 C 0.51 20.87 4.71 87.66 0.41 21.28 16 14 O -0.60 -30.46 14.62 -3.03 -0.04 -30.50 16 15 C -0.12 -3.27 3.39 -10.56 -0.04 -3.31 16 16 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 17 C -0.12 -3.00 6.55 31.80 0.21 -2.79 16 18 C 0.05 0.97 7.55 86.65 0.65 1.62 16 19 N -0.68 -15.64 7.14 -479.65 -3.43 -19.07 16 20 C 0.09 2.31 3.92 45.16 0.18 2.48 16 21 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 22 C -0.15 -4.74 8.37 71.98 0.60 -4.14 16 23 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 24 H 0.06 3.72 6.07 -2.39 -0.01 3.71 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.40 14.06 8.54 -92.70 -0.79 13.27 16 28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.05 1.89 6.91 -2.39 -0.02 1.87 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.35 5.90 8.92 -89.70 -0.80 5.10 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.78 7.09 -2.39 -0.02 1.76 16 35 H 0.03 1.30 7.04 -2.39 -0.02 1.28 16 Total: -1.00 -69.76 282.24 -0.30 -70.06 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.50 Total: 24.49 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 3.47 Total: -4.29 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.25 Total: -104.00 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.04 Total: -30.50 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.76 -0.30 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221619223.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.984 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds