Wall clock time and date at job start Mon Mar 30 2020 04:04:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.08997 * 109.47148 * 2 1
4 4 C 1.50698 * 109.47022 * 239.99448 * 2 1 3
5 5 H 1.08001 * 120.00146 * 240.00082 * 4 2 1
6 6 C 1.37882 * 120.00031 * 60.00116 * 4 2 1
7 7 N 1.31511 * 119.99783 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 119.99938 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.47238 * 0.02562 * 8 6 4
10 10 H 1.48500 * 109.47043 * 119.99862 * 8 6 4
11 11 H 1.48500 * 109.47070 * 240.00217 * 8 6 4
12 12 N 1.46503 * 109.46770 * 119.99423 * 2 1 3
13 13 C 1.34765 * 120.00236 * 274.99731 * 12 2 1
14 14 O 1.21280 * 120.00218 * 0.02562 * 13 12 2
15 15 C 1.50707 * 120.00365 * 180.02562 * 13 12 2
16 16 H 1.09000 * 110.35020 * 332.87757 * 15 13 12
17 17 C 1.54590 * 110.31136 * 210.72929 * 15 13 12
18 18 C 1.54938 * 103.08292 * 219.21280 * 17 15 13
19 19 N 1.48535 * 103.22613 * 37.32985 * 18 17 15
20 20 C 1.47908 * 105.81649 * 320.79049 * 19 18 17
21 21 H 1.08997 * 109.91686 * 265.77635 * 20 19 18
22 22 C 1.53003 * 109.91382 * 144.68624 * 20 19 18
23 23 H 1.09006 * 109.46641 * 300.00600 * 1 2 3
24 24 H 1.08998 * 109.46601 * 60.00290 * 1 2 3
25 25 H 1.08999 * 109.46825 * 180.02562 * 1 2 3
26 26 H 0.97003 * 119.99730 * 180.02562 * 7 6 4
27 27 H 0.97005 * 119.99541 * 95.00529 * 12 2 1
28 28 H 1.09004 * 110.72360 * 100.76977 * 17 15 13
29 29 H 1.09000 * 110.72800 * 337.66766 * 17 15 13
30 30 H 1.09000 * 110.66334 * 155.75997 * 18 17 15
31 31 H 1.08998 * 110.66621 * 278.89310 * 18 17 15
32 32 H 1.00897 * 110.99826 * 200.27761 * 19 18 17
33 33 H 1.09000 * 109.47326 * 65.22420 * 22 20 19
34 34 H 1.09000 * 109.47069 * 185.23002 * 22 20 19
35 35 H 1.09003 * 109.47058 * 305.22507 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6533 -1.5886 -1.1312
6 6 1.6993 -0.2396 -2.4827
7 7 0.9437 0.8300 -2.6035
8 14 2.3225 -1.1199 -4.0079
9 1 3.1474 -2.2867 -3.6036
10 1 1.1678 -1.5870 -4.8163
11 1 3.1473 -0.1862 -4.8160
12 7 2.0183 -0.6905 1.1963
13 6 2.1471 -0.0181 2.3571
14 8 1.8583 1.1585 2.4116
15 6 2.6499 -0.7283 3.5876
16 1 2.4137 -1.7911 3.5350
17 6 2.0306 -0.1032 4.8586
18 6 3.2095 -0.1121 5.8640
19 7 4.3847 0.2043 5.0124
20 6 4.1715 -0.5257 3.7438
21 1 4.6777 -1.4903 3.7808
22 6 4.7072 0.2990 2.5717
23 1 -0.3633 0.5140 0.8900
24 1 -0.3632 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 0.7090 1.1611 -3.4845
27 1 2.2491 -1.6317 1.1527
28 1 1.2058 -0.7137 5.2261
29 1 1.6972 0.9161 4.6641
30 1 3.0701 0.6537 6.6270
31 1 3.3187 -1.0960 6.3201
32 1 5.2423 -0.0866 5.4573
33 1 5.7890 0.3974 2.6610
34 1 4.4639 -0.2012 1.6343
35 1 4.2500 1.2885 2.5846
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000221619223.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:04:59
Heat of formation + Delta-G solvation = -68.074892 kcal
Electronic energy + Delta-G solvation = -16282.677416 eV
Core-core repulsion = 13700.041828 eV
Total energy + Delta-G solvation = -2582.635588 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.27107 -38.68020 -36.61165 -34.32044 -32.38477 -31.84873 -30.33908 -27.35945
-26.74558 -23.85850 -22.16389 -21.83940 -20.53582 -18.61907 -18.06747 -17.33956
-17.08836 -16.23102 -15.79335 -15.51185 -15.02077 -14.48914 -14.12527 -13.83994
-13.63231 -13.35240 -13.08581 -12.95222 -12.82667 -12.81667 -12.63132 -12.30092
-12.19409 -12.11492 -11.83781 -11.67025 -11.08971 -10.66963 -10.52443 -9.69738
-9.43160 -8.17504 -6.34991 1.44035 1.44842 1.57026 1.85582 2.35791
2.65128 3.12977 3.23890 3.65312 3.67316 4.02433 4.23734 4.35589
4.41458 4.54016 4.67048 4.73831 4.75563 4.90553 4.91564 5.01568
5.05714 5.10345 5.26065 5.34212 5.45306 5.63325 5.70268 5.85463
5.93386 6.10819 6.54563 6.73905 7.02253 7.33308 7.62098 8.89198
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.046515 B = 0.006744 C = 0.006279
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 601.809244 B = 4150.563820 C = 4458.306293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.272 3.728
3 H -0.006 1.006
4 C -0.543 4.543
5 H 0.074 0.926
6 C 0.012 3.988
7 N -0.920 5.920
8 Si 0.973 3.027
9 H -0.258 1.258
10 H -0.279 1.279
11 H -0.284 1.284
12 N -0.706 5.706
13 C 0.515 3.485
14 O -0.598 6.598
15 C -0.117 4.117
16 H 0.122 0.878
17 C -0.116 4.116
18 C 0.050 3.950
19 N -0.684 5.684
20 C 0.092 3.908
21 H 0.089 0.911
22 C -0.147 4.147
23 H 0.009 0.991
24 H 0.065 0.935
25 H 0.041 0.959
26 H 0.265 0.735
27 H 0.403 0.597
28 H 0.093 0.907
29 H 0.055 0.945
30 H 0.088 0.912
31 H 0.071 0.929
32 H 0.352 0.648
33 H 0.070 0.930
34 H 0.050 0.950
35 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.817 -8.440 13.469 16.926
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.168 3.832
3 H 0.012 0.988
4 C -0.581 4.581
5 H 0.092 0.908
6 C -0.188 4.188
7 N -0.558 5.558
8 Si 0.798 3.202
9 H -0.182 1.182
10 H -0.204 1.204
11 H -0.211 1.211
12 N -0.355 5.355
13 C 0.302 3.698
14 O -0.480 6.480
15 C -0.139 4.139
16 H 0.140 0.860
17 C -0.154 4.154
18 C -0.079 4.079
19 N -0.315 5.315
20 C -0.018 4.018
21 H 0.107 0.893
22 C -0.205 4.205
23 H 0.029 0.971
24 H 0.084 0.916
25 H 0.060 0.940
26 H 0.074 0.926
27 H 0.238 0.762
28 H 0.112 0.888
29 H 0.073 0.927
30 H 0.106 0.894
31 H 0.089 0.911
32 H 0.169 0.831
33 H 0.089 0.911
34 H 0.069 0.931
35 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 5.317 -6.843 13.122 15.726
hybrid contribution 0.212 -1.034 -0.970 1.434
sum 5.529 -7.877 12.152 15.501
Atomic orbital electron populations
1.21901 0.98529 0.99421 0.99394 1.18290 0.90944 0.91788 0.82191
0.98794 1.21577 1.32376 1.13440 0.90750 0.90784 1.25831 0.94911
0.95587 1.02430 1.70071 1.37185 1.24047 1.24503 0.85282 0.78091
0.78517 0.78349 1.18218 1.20423 1.21057 1.46335 1.65321 1.14068
1.09747 1.20891 0.76507 0.86984 0.85402 1.90620 1.53053 1.18499
1.85782 1.22410 0.96966 1.01632 0.92883 0.86037 1.22515 0.98691
1.01360 0.92844 1.23011 0.88791 1.01118 0.94980 1.62881 1.05871
1.58703 1.04082 1.22025 0.92242 0.96474 0.91105 0.89335 1.21894
1.01507 0.99878 0.97177 0.97148 0.91629 0.93979 0.92604 0.76177
0.88820 0.92655 0.89378 0.91057 0.83067 0.91091 0.93137 0.94959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16
2 C 0.27 14.34 2.56 44.25 0.11 14.45 16
3 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16
4 C -0.54 -28.94 8.73 25.60 0.22 -28.72 16
5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16
6 C 0.01 0.66 5.30 84.66 0.45 1.11 16
7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16
8 Si 0.97 42.21 29.54 68.60 2.03 44.24 16
9 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16
10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16
11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
12 N -0.71 -29.55 4.63 -446.09 -2.07 -31.61 16
13 C 0.51 20.87 4.71 87.66 0.41 21.28 16
14 O -0.60 -30.46 14.62 -3.03 -0.04 -30.50 16
15 C -0.12 -3.27 3.39 -10.56 -0.04 -3.31 16
16 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16
17 C -0.12 -3.00 6.55 31.80 0.21 -2.79 16
18 C 0.05 0.97 7.55 86.65 0.65 1.62 16
19 N -0.68 -15.64 7.14 -479.65 -3.43 -19.07 16
20 C 0.09 2.31 3.92 45.16 0.18 2.48 16
21 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16
22 C -0.15 -4.74 8.37 71.98 0.60 -4.14 16
23 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16
24 H 0.06 3.72 6.07 -2.39 -0.01 3.71 16
25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16
26 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16
27 H 0.40 14.06 8.54 -92.70 -0.79 13.27 16
28 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16
29 H 0.05 1.89 6.91 -2.39 -0.02 1.87 16
30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.35 5.90 8.92 -89.70 -0.80 5.10 16
33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.05 1.78 7.09 -2.39 -0.02 1.76 16
35 H 0.03 1.30 7.04 -2.39 -0.02 1.28 16
Total: -1.00 -69.76 282.24 -0.30 -70.06
By element:
Atomic # 1 Polarization: 25.00 SS G_CDS: -0.50 Total: 24.49 kcal
Atomic # 6 Polarization: -7.76 SS G_CDS: 3.47 Total: -4.29 kcal
Atomic # 7 Polarization: -98.75 SS G_CDS: -5.25 Total: -104.00 kcal
Atomic # 8 Polarization: -30.46 SS G_CDS: -0.04 Total: -30.50 kcal
Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal
Total: -69.76 -0.30 -70.06 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000221619223.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.984 kcal
(2) G-P(sol) polarization free energy of solvation -69.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds