Wall clock time and date at job start Mon Mar 30 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.35590 * 2 1 4 4 C 1.54595 * 110.31062 * 237.85948 * 2 1 3 5 5 C 1.54943 * 102.92414 * 219.12800 * 4 2 1 6 6 N 1.48536 * 103.22583 * 37.41037 * 5 4 2 7 7 C 1.47902 * 105.82263 * 320.79540 * 6 5 4 8 8 H 1.08996 * 109.92142 * 265.98260 * 7 6 5 9 9 C 1.50697 * 109.92037 * 144.68319 * 7 6 5 10 10 O 1.21283 * 119.99639 * 341.44954 * 9 7 6 11 11 N 1.34773 * 120.00350 * 161.45630 * 9 7 6 12 12 C 1.46502 * 120.00121 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.46957 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.46915 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99781 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99416 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47419 * 89.99905 * 18 16 14 20 20 H 1.48505 * 109.46546 * 209.99349 * 18 16 14 21 21 H 1.48498 * 109.47536 * 329.99377 * 18 16 14 22 22 H 1.08993 * 109.46969 * 180.68647 * 1 2 3 23 23 H 1.09001 * 109.46592 * 300.68970 * 1 2 3 24 24 H 1.08996 * 109.47006 * 60.68653 * 1 2 3 25 25 H 1.08997 * 110.72632 * 100.76813 * 4 2 1 26 26 H 1.08996 * 110.72469 * 337.48434 * 4 2 1 27 27 H 1.09003 * 110.66503 * 278.97903 * 5 4 2 28 28 H 1.08992 * 110.81207 * 155.91671 * 5 4 2 29 29 H 1.00901 * 110.99803 * 81.30647 * 6 5 4 30 30 H 0.96999 * 120.00037 * 359.97438 * 11 9 7 31 31 H 1.09004 * 109.47006 * 299.99873 * 12 11 9 32 32 H 1.09000 * 109.47036 * 60.00081 * 12 11 9 33 33 H 1.08991 * 109.46952 * 299.99887 * 13 12 11 34 34 H 1.09000 * 109.47004 * 60.00279 * 13 12 11 35 35 H 0.96993 * 119.99614 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0666 -0.7713 -1.2276 5 6 3.2856 -1.5348 -0.6515 6 7 2.8314 -1.9236 0.7082 7 6 2.0646 -0.7684 1.2229 8 1 2.7162 -0.1225 1.8113 9 6 0.9145 -1.2512 2.0687 10 8 0.5301 -2.3974 1.9720 11 7 0.3131 -0.4093 2.9323 12 6 -0.8052 -0.8786 3.7541 13 6 -1.3016 0.2652 4.6409 14 6 -2.4525 -0.2174 5.4858 15 1 -2.7957 -1.2377 5.3986 16 6 -3.0677 0.6440 6.3692 17 7 -2.6500 1.8865 6.4750 18 14 -4.4938 0.0455 7.4170 19 1 -3.9734 -0.4992 8.6967 20 1 -5.4111 1.1790 7.6981 21 1 -5.2305 -1.0187 6.6891 22 1 -0.3633 -1.0275 0.0123 23 1 -0.3632 0.5245 0.8838 24 1 -0.3633 0.5031 -0.8960 25 1 2.3791 -0.0806 -2.0108 26 1 1.3173 -1.4682 -1.6030 27 1 4.1565 -0.8818 -0.5941 28 1 3.5075 -2.4181 -1.2502 29 1 2.2571 -2.7526 0.6743 30 1 0.6208 0.5073 3.0098 31 1 -1.6154 -1.2151 3.1071 32 1 -0.4732 -1.7061 4.3810 33 1 -0.4913 0.6012 5.2878 34 1 -1.6335 1.0930 4.0142 35 1 -3.0831 2.4925 7.0963 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226951092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:12 Heat of formation + Delta-G solvation = -75.386416 kcal Electronic energy + Delta-G solvation = -15796.439873 eV Core-core repulsion = 13213.487233 eV Total energy + Delta-G solvation = -2582.952639 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54164 -38.74577 -36.60635 -34.88416 -33.04379 -31.79895 -30.25354 -27.22531 -26.37902 -23.55448 -22.59667 -22.23267 -20.46213 -18.61480 -18.27136 -17.28977 -16.99271 -16.52194 -16.10026 -15.76330 -14.94081 -14.77008 -14.49648 -14.32297 -13.82694 -13.69973 -13.49932 -13.22688 -12.94982 -12.54780 -12.29592 -12.25512 -12.06979 -11.89997 -11.71681 -11.63301 -11.45753 -10.77748 -10.61162 -10.01977 -9.67181 -8.24996 -6.35493 1.41340 1.41621 1.53043 1.58708 2.19755 2.43615 3.09902 3.23778 3.53790 3.70439 3.84498 4.09082 4.37002 4.42667 4.45768 4.47564 4.52082 4.67860 4.73756 4.83395 4.92560 4.99029 5.07509 5.16042 5.26621 5.30818 5.47156 5.56994 5.70658 5.77932 6.15118 6.24387 6.59338 6.77510 7.21936 7.33985 8.86811 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.061463 B = 0.004991 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.452934 B = 5608.542621 C = 5742.379804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 H 0.112 0.888 4 C -0.147 4.147 5 C 0.042 3.958 6 N -0.673 5.673 7 C 0.058 3.942 8 H 0.121 0.879 9 C 0.513 3.487 10 O -0.588 6.588 11 N -0.713 5.713 12 C 0.142 3.858 13 C 0.024 3.976 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.267 1.267 22 H 0.032 0.968 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.342 0.658 30 H 0.411 0.589 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.010 0.990 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.320 -1.121 -14.490 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.125 4.125 3 H 0.130 0.870 4 C -0.186 4.186 5 C -0.087 4.087 6 N -0.304 5.304 7 C -0.055 4.055 8 H 0.139 0.861 9 C 0.301 3.699 10 O -0.469 6.469 11 N -0.364 5.364 12 C 0.018 3.982 13 C -0.014 4.014 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.191 1.191 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.161 0.839 30 H 0.247 0.753 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.639 -1.663 -14.081 17.727 hybrid contribution -1.678 0.163 0.416 1.736 sum 8.961 -1.501 -13.665 16.410 Atomic orbital electron populations 1.22025 0.95444 1.00958 1.02932 1.22392 0.95511 1.01237 0.93385 0.87024 1.23184 0.98105 0.99785 0.97485 1.23277 0.97666 1.00503 0.87236 1.62925 1.39340 1.04751 1.23355 1.22638 0.92043 0.94438 0.96416 0.86112 1.21130 0.84042 0.85123 0.79630 1.90623 1.66663 1.20396 1.69169 1.46148 1.34587 1.15312 1.40310 1.21195 0.87171 0.97644 0.92142 1.19125 0.95430 0.93098 0.93728 1.21460 1.16798 0.97809 1.22563 0.92482 1.25843 1.00028 0.94913 0.98196 1.70051 1.42950 1.05815 1.37705 0.85464 0.78735 0.78073 0.78889 1.19788 1.20421 1.19140 0.94837 0.92720 0.90509 0.88077 0.92201 0.88542 0.89357 0.83893 0.75346 0.93703 0.93853 0.97332 0.97162 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 7.92 71.98 0.57 -3.19 16 2 C -0.10 -2.04 3.59 -9.91 -0.04 -2.08 16 3 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.15 -2.37 6.61 31.80 0.21 -2.16 16 5 C 0.04 0.70 7.55 86.65 0.65 1.35 16 6 N -0.67 -16.42 7.39 -484.01 -3.58 -19.99 16 7 C 0.06 1.42 3.81 44.31 0.17 1.59 16 8 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 9 C 0.51 17.18 4.94 87.66 0.43 17.61 16 10 O -0.59 -24.16 15.38 -3.04 -0.05 -24.21 16 11 N -0.71 -24.60 4.40 -463.05 -2.04 -26.64 16 12 C 0.14 6.16 5.61 86.38 0.48 6.64 16 13 C 0.02 1.19 5.09 29.85 0.15 1.34 16 14 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 18 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H 0.03 0.98 7.26 -2.39 -0.02 0.96 16 23 H 0.05 1.47 6.74 -2.39 -0.02 1.45 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.11 7.86 -2.39 -0.02 1.09 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.34 9.73 7.32 -89.69 -0.66 9.07 16 30 H 0.41 12.13 8.47 -92.71 -0.79 11.34 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -65.72 286.12 -0.38 -66.10 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -0.36 Total: 21.32 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 3.33 Total: -8.39 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -5.33 Total: -100.48 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -65.72 -0.38 -66.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226951092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.285 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds