Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.28854 * 2 1 4 4 C 1.54266 * 110.32314 * 237.87348 * 2 1 3 5 5 C 1.54377 * 105.06190 * 241.10342 * 4 2 1 6 6 N 1.48562 * 104.59407 * 336.14868 * 5 4 2 7 7 C 1.48562 * 104.22433 * 39.48055 * 6 5 4 8 8 H 1.08999 * 110.41058 * 79.29526 * 7 6 5 9 9 C 1.50695 * 110.41427 * 201.74153 * 7 6 5 10 10 O 1.21279 * 119.99787 * 15.16986 * 9 7 6 11 11 N 1.34778 * 120.00391 * 195.17759 * 9 7 6 12 12 C 1.46489 * 120.00451 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47421 * 179.97438 * 12 11 9 14 14 C 1.50705 * 109.47459 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99870 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00249 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99734 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00266 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47070 * 59.99997 * 18 16 14 20 20 H 1.48498 * 109.46985 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46988 * 300.00318 * 18 16 14 22 22 H 1.08995 * 109.47456 * 180.67407 * 1 2 3 23 23 H 1.09006 * 109.47038 * 300.67170 * 1 2 3 24 24 H 1.08999 * 109.47091 * 60.66989 * 1 2 3 25 25 H 1.09005 * 110.32054 * 0.02562 * 4 2 1 26 26 H 1.09003 * 110.32265 * 122.20496 * 4 2 1 27 27 H 1.09000 * 110.40820 * 94.92490 * 5 4 2 28 28 H 1.08989 * 110.41015 * 217.36711 * 5 4 2 29 29 H 1.00903 * 110.99521 * 279.92577 * 6 5 4 30 30 H 0.97000 * 119.99143 * 359.97438 * 11 9 7 31 31 H 1.08999 * 109.47229 * 299.99569 * 12 11 9 32 32 H 1.09004 * 109.47323 * 59.99502 * 12 11 9 33 33 H 1.08999 * 109.47460 * 299.99978 * 13 12 11 34 34 H 1.09005 * 109.47297 * 60.00030 * 13 12 11 35 35 H 0.97002 * 119.99669 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7693 -1.2251 5 6 2.8806 -1.9416 -0.6378 6 7 3.2693 -1.4836 0.7210 7 6 2.0662 -0.7722 1.2245 8 1 1.3229 -1.4863 1.5789 9 6 2.4439 0.1851 2.3254 10 8 3.6059 0.4904 2.4912 11 7 1.4905 0.7018 3.1257 12 6 1.8577 1.6320 4.1962 13 6 0.5985 2.0661 4.9489 14 6 0.9763 3.0225 6.0506 15 1 2.0111 3.2939 6.1987 16 6 0.0010 3.5510 6.8693 17 7 -1.2591 3.2201 6.6892 18 14 0.4692 4.7371 8.2344 19 1 1.1307 5.9303 7.6481 20 1 -0.7531 5.1582 8.9650 21 1 1.4022 4.0659 9.1748 22 1 -0.3634 -1.0275 0.0121 23 1 -0.3633 0.5243 0.8839 24 1 -0.3633 0.5034 -0.8959 25 1 1.2387 -1.1465 -1.8266 26 1 2.7081 -0.1250 -1.8255 27 1 2.2647 -2.8387 -0.5748 28 1 3.7669 -2.1296 -1.2436 29 1 4.0649 -0.8642 0.6799 30 1 0.5612 0.4578 2.9928 31 1 2.5424 1.1394 4.8866 32 1 2.3435 2.5078 3.7658 33 1 -0.0859 2.5589 4.2584 34 1 0.1124 1.1905 5.3793 35 1 -1.9453 3.5922 7.2650 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226951101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = -79.983219 kcal Electronic energy + Delta-G solvation = -15612.215208 eV Core-core repulsion = 13029.063237 eV Total energy + Delta-G solvation = -2583.151972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32304 -38.93606 -36.62485 -34.86743 -32.97381 -31.85197 -30.25205 -27.27605 -26.24294 -23.65205 -22.67754 -21.73250 -20.88763 -18.91925 -18.45645 -17.00862 -16.57155 -16.47605 -15.85252 -15.52470 -15.41249 -14.94155 -14.55246 -14.33687 -14.12817 -13.60095 -13.23293 -13.02649 -12.93963 -12.57121 -12.48058 -12.35344 -12.20749 -11.76593 -11.66032 -11.49858 -11.45423 -10.79630 -10.60865 -10.07787 -9.72426 -8.24752 -6.35468 1.41566 1.43722 1.51776 1.54355 2.16169 2.43229 3.10003 3.23959 3.55782 3.72237 3.86157 4.07472 4.32185 4.39046 4.45972 4.48616 4.53716 4.68747 4.81751 4.82968 4.94018 5.00854 5.16503 5.22021 5.24887 5.34294 5.45961 5.56043 5.64406 5.77199 6.14770 6.23836 6.57210 6.77124 7.20033 7.33920 8.86858 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.055016 B = 0.004940 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.819511 B = 5666.348681 C = 6002.484379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.057 0.943 4 C -0.144 4.144 5 C 0.040 3.960 6 N -0.668 5.668 7 C 0.061 3.939 8 H 0.125 0.875 9 C 0.509 3.491 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.140 3.860 13 C 0.024 3.976 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.269 1.269 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.342 0.658 30 H 0.410 0.590 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.010 0.990 34 H 0.009 0.991 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -8.856 -15.793 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.076 0.924 4 C -0.183 4.183 5 C -0.089 4.089 6 N -0.297 5.297 7 C -0.052 4.052 8 H 0.143 0.857 9 C 0.296 3.704 10 O -0.466 6.466 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.194 1.194 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.160 0.840 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.679 -9.263 -15.215 18.013 hybrid contribution -0.306 1.570 0.431 1.657 sum 2.373 -7.693 -14.783 16.833 Atomic orbital electron populations 1.21861 0.92300 1.03282 1.02577 1.22427 0.98259 0.98948 0.93828 0.92447 1.22955 1.01188 0.97454 0.96706 1.23172 1.00246 0.98085 0.87427 1.63321 1.04734 1.39132 1.22501 1.22792 0.95232 0.94217 0.92966 0.85745 1.21144 0.85133 0.81233 0.82931 1.90634 1.20572 1.62620 1.72767 1.46125 1.10988 1.46472 1.32714 1.21235 0.98383 0.90991 0.87758 1.19125 0.92174 0.95703 0.94375 1.21431 0.94037 1.27537 1.15771 0.92416 1.25850 0.94778 0.98299 1.00046 1.70050 1.00890 1.45250 1.40303 0.85509 0.77761 0.79062 0.78789 1.19370 1.20473 1.19399 0.90449 0.93096 0.91058 0.88468 0.91192 0.88941 0.89203 0.84035 0.75407 0.93684 0.93607 0.97188 0.97282 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.91 71.98 0.64 -1.73 16 2 C -0.11 -2.29 3.19 -9.90 -0.03 -2.32 16 3 H 0.06 1.40 7.85 -2.38 -0.02 1.38 16 4 C -0.14 -2.17 6.65 31.49 0.21 -1.96 16 5 C 0.04 0.64 7.47 86.45 0.65 1.29 16 6 N -0.67 -16.31 7.34 -482.80 -3.54 -19.86 16 7 C 0.06 1.52 3.19 44.31 0.14 1.66 16 8 H 0.12 2.70 7.85 -2.39 -0.02 2.68 16 9 C 0.51 17.49 7.01 87.66 0.61 18.11 16 10 O -0.59 -24.74 15.85 -3.03 -0.05 -24.79 16 11 N -0.71 -25.13 5.56 -463.09 -2.57 -27.70 16 12 C 0.14 6.14 5.61 86.38 0.48 6.62 16 13 C 0.02 1.20 5.09 29.85 0.15 1.35 16 14 C -0.55 -30.87 9.11 25.60 0.23 -30.63 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C 0.01 0.52 5.46 84.65 0.46 0.98 16 17 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 18 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.08 1.03 8.12 -2.39 -0.02 1.02 16 23 H 0.05 0.97 7.78 -2.38 -0.02 0.95 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.09 7.71 -2.38 -0.02 1.07 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.34 9.38 7.80 -89.69 -0.70 8.68 16 30 H 0.41 12.38 8.11 -92.71 -0.75 11.63 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -66.25 290.99 -0.67 -66.92 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.37 Total: 20.28 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 3.55 Total: -6.64 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.83 Total: -101.44 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.25 -0.67 -66.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226951101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds