Wall clock time and date at job start Mon Mar 30 2020 04:00:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 110.28854 * 2 1
4 4 C 1.54266 * 110.32314 * 237.87348 * 2 1 3
5 5 C 1.54377 * 105.06190 * 241.10342 * 4 2 1
6 6 N 1.48562 * 104.59407 * 336.14868 * 5 4 2
7 7 C 1.48562 * 104.22433 * 39.48055 * 6 5 4
8 8 H 1.08999 * 110.41058 * 79.29526 * 7 6 5
9 9 C 1.50695 * 110.41427 * 201.74153 * 7 6 5
10 10 O 1.21279 * 119.99787 * 15.16986 * 9 7 6
11 11 N 1.34778 * 120.00391 * 195.17759 * 9 7 6
12 12 C 1.46489 * 120.00451 * 179.97438 * 11 9 7
13 13 C 1.52996 * 109.47421 * 179.97438 * 12 11 9
14 14 C 1.50705 * 109.47459 * 179.97438 * 13 12 11
15 15 H 1.07996 * 119.99870 * 0.02562 * 14 13 12
16 16 C 1.37871 * 120.00249 * 180.02562 * 14 13 12
17 17 N 1.31520 * 119.99734 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00266 * 180.02562 * 16 14 13
19 19 H 1.48497 * 109.47070 * 59.99997 * 18 16 14
20 20 H 1.48498 * 109.46985 * 179.97438 * 18 16 14
21 21 H 1.48498 * 109.46988 * 300.00318 * 18 16 14
22 22 H 1.08995 * 109.47456 * 180.67407 * 1 2 3
23 23 H 1.09006 * 109.47038 * 300.67170 * 1 2 3
24 24 H 1.08999 * 109.47091 * 60.66989 * 1 2 3
25 25 H 1.09005 * 110.32054 * 0.02562 * 4 2 1
26 26 H 1.09003 * 110.32265 * 122.20496 * 4 2 1
27 27 H 1.09000 * 110.40820 * 94.92490 * 5 4 2
28 28 H 1.08989 * 110.41015 * 217.36711 * 5 4 2
29 29 H 1.00903 * 110.99521 * 279.92577 * 6 5 4
30 30 H 0.97000 * 119.99143 * 359.97438 * 11 9 7
31 31 H 1.08999 * 109.47229 * 299.99569 * 12 11 9
32 32 H 1.09004 * 109.47323 * 59.99502 * 12 11 9
33 33 H 1.08999 * 109.47460 * 299.99978 * 13 12 11
34 34 H 1.09005 * 109.47297 * 60.00030 * 13 12 11
35 35 H 0.97002 * 119.99669 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9080 1.0224 0.0000
4 6 2.0658 -0.7693 -1.2251
5 6 2.8806 -1.9416 -0.6378
6 7 3.2693 -1.4836 0.7210
7 6 2.0662 -0.7722 1.2245
8 1 1.3229 -1.4863 1.5789
9 6 2.4439 0.1851 2.3254
10 8 3.6059 0.4904 2.4912
11 7 1.4905 0.7018 3.1257
12 6 1.8577 1.6320 4.1962
13 6 0.5985 2.0661 4.9489
14 6 0.9763 3.0225 6.0506
15 1 2.0111 3.2939 6.1987
16 6 0.0010 3.5510 6.8693
17 7 -1.2591 3.2201 6.6892
18 14 0.4692 4.7371 8.2344
19 1 1.1307 5.9303 7.6481
20 1 -0.7531 5.1582 8.9650
21 1 1.4022 4.0659 9.1748
22 1 -0.3634 -1.0275 0.0121
23 1 -0.3633 0.5243 0.8839
24 1 -0.3633 0.5034 -0.8959
25 1 1.2387 -1.1465 -1.8266
26 1 2.7081 -0.1250 -1.8255
27 1 2.2647 -2.8387 -0.5748
28 1 3.7669 -2.1296 -1.2436
29 1 4.0649 -0.8642 0.6799
30 1 0.5612 0.4578 2.9928
31 1 2.5424 1.1394 4.8866
32 1 2.3435 2.5078 3.7658
33 1 -0.0859 2.5589 4.2584
34 1 0.1124 1.1905 5.3793
35 1 -1.9453 3.5922 7.2650
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226951101.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:00:18
Heat of formation + Delta-G solvation = -79.983219 kcal
Electronic energy + Delta-G solvation = -15612.215208 eV
Core-core repulsion = 13029.063237 eV
Total energy + Delta-G solvation = -2583.151972 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.32304 -38.93606 -36.62485 -34.86743 -32.97381 -31.85197 -30.25205 -27.27605
-26.24294 -23.65205 -22.67754 -21.73250 -20.88763 -18.91925 -18.45645 -17.00862
-16.57155 -16.47605 -15.85252 -15.52470 -15.41249 -14.94155 -14.55246 -14.33687
-14.12817 -13.60095 -13.23293 -13.02649 -12.93963 -12.57121 -12.48058 -12.35344
-12.20749 -11.76593 -11.66032 -11.49858 -11.45423 -10.79630 -10.60865 -10.07787
-9.72426 -8.24752 -6.35468 1.41566 1.43722 1.51776 1.54355 2.16169
2.43229 3.10003 3.23959 3.55782 3.72237 3.86157 4.07472 4.32185
4.39046 4.45972 4.48616 4.53716 4.68747 4.81751 4.82968 4.94018
5.00854 5.16503 5.22021 5.24887 5.34294 5.45961 5.56043 5.64406
5.77199 6.14770 6.23836 6.57210 6.77124 7.20033 7.33920 8.86858
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.055016 B = 0.004940 C = 0.004664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 508.819511 B = 5666.348681 C = 6002.484379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.114 4.114
3 H 0.057 0.943
4 C -0.144 4.144
5 C 0.040 3.960
6 N -0.668 5.668
7 C 0.061 3.939
8 H 0.125 0.875
9 C 0.509 3.491
10 O -0.586 6.586
11 N -0.712 5.712
12 C 0.140 3.860
13 C 0.024 3.976
14 C -0.549 4.549
15 H 0.058 0.942
16 C 0.009 3.991
17 N -0.926 5.926
18 Si 0.964 3.036
19 H -0.269 1.269
20 H -0.280 1.280
21 H -0.269 1.269
22 H 0.077 0.923
23 H 0.050 0.950
24 H 0.070 0.930
25 H 0.097 0.903
26 H 0.069 0.931
27 H 0.092 0.908
28 H 0.090 0.910
29 H 0.342 0.658
30 H 0.410 0.590
31 H 0.045 0.955
32 H 0.046 0.954
33 H 0.010 0.990
34 H 0.009 0.991
35 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.096 -8.856 -15.793 18.228
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.135 4.135
3 H 0.076 0.924
4 C -0.183 4.183
5 C -0.089 4.089
6 N -0.297 5.297
7 C -0.052 4.052
8 H 0.143 0.857
9 C 0.296 3.704
10 O -0.466 6.466
11 N -0.363 5.363
12 C 0.016 3.984
13 C -0.014 4.014
14 C -0.588 4.588
15 H 0.076 0.924
16 C -0.190 4.190
17 N -0.565 5.565
18 Si 0.789 3.211
19 H -0.194 1.194
20 H -0.205 1.205
21 H -0.194 1.194
22 H 0.096 0.904
23 H 0.069 0.931
24 H 0.089 0.911
25 H 0.115 0.885
26 H 0.088 0.912
27 H 0.111 0.889
28 H 0.108 0.892
29 H 0.160 0.840
30 H 0.246 0.754
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.028 0.972
34 H 0.027 0.973
35 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 2.679 -9.263 -15.215 18.013
hybrid contribution -0.306 1.570 0.431 1.657
sum 2.373 -7.693 -14.783 16.833
Atomic orbital electron populations
1.21861 0.92300 1.03282 1.02577 1.22427 0.98259 0.98948 0.93828
0.92447 1.22955 1.01188 0.97454 0.96706 1.23172 1.00246 0.98085
0.87427 1.63321 1.04734 1.39132 1.22501 1.22792 0.95232 0.94217
0.92966 0.85745 1.21144 0.85133 0.81233 0.82931 1.90634 1.20572
1.62620 1.72767 1.46125 1.10988 1.46472 1.32714 1.21235 0.98383
0.90991 0.87758 1.19125 0.92174 0.95703 0.94375 1.21431 0.94037
1.27537 1.15771 0.92416 1.25850 0.94778 0.98299 1.00046 1.70050
1.00890 1.45250 1.40303 0.85509 0.77761 0.79062 0.78789 1.19370
1.20473 1.19399 0.90449 0.93096 0.91058 0.88468 0.91192 0.88941
0.89203 0.84035 0.75407 0.93684 0.93607 0.97188 0.97282 0.92495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.37 8.91 71.98 0.64 -1.73 16
2 C -0.11 -2.29 3.19 -9.90 -0.03 -2.32 16
3 H 0.06 1.40 7.85 -2.38 -0.02 1.38 16
4 C -0.14 -2.17 6.65 31.49 0.21 -1.96 16
5 C 0.04 0.64 7.47 86.45 0.65 1.29 16
6 N -0.67 -16.31 7.34 -482.80 -3.54 -19.86 16
7 C 0.06 1.52 3.19 44.31 0.14 1.66 16
8 H 0.12 2.70 7.85 -2.39 -0.02 2.68 16
9 C 0.51 17.49 7.01 87.66 0.61 18.11 16
10 O -0.59 -24.74 15.85 -3.03 -0.05 -24.79 16
11 N -0.71 -25.13 5.56 -463.09 -2.57 -27.70 16
12 C 0.14 6.14 5.61 86.38 0.48 6.62 16
13 C 0.02 1.20 5.09 29.85 0.15 1.35 16
14 C -0.55 -30.87 9.11 25.60 0.23 -30.63 16
15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16
16 C 0.01 0.52 5.46 84.65 0.46 0.98 16
17 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16
18 Si 0.96 43.64 29.54 68.60 2.03 45.66 16
19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16
21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
22 H 0.08 1.03 8.12 -2.39 -0.02 1.02 16
23 H 0.05 0.97 7.78 -2.38 -0.02 0.95 16
24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
25 H 0.10 1.09 7.71 -2.38 -0.02 1.07 16
26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
29 H 0.34 9.38 7.80 -89.69 -0.70 8.68 16
30 H 0.41 12.38 8.11 -92.71 -0.75 11.63 16
31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16
33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
34 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16
Total: -1.00 -66.25 290.99 -0.67 -66.92
By element:
Atomic # 1 Polarization: 20.66 SS G_CDS: -0.37 Total: 20.28 kcal
Atomic # 6 Polarization: -10.19 SS G_CDS: 3.55 Total: -6.64 kcal
Atomic # 7 Polarization: -95.61 SS G_CDS: -5.83 Total: -101.44 kcal
Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal
Total: -66.25 -0.67 -66.92 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226951101.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal
(2) G-P(sol) polarization free energy of solvation -66.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds