Wall clock time and date at job start Mon Mar 30 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45824 * 2 1 4 4 C 1.53044 * 109.45907 * 240.02914 * 2 1 3 5 5 C 1.53125 * 109.27506 * 180.80948 * 4 2 1 6 6 H 1.08994 * 109.57291 * 177.59204 * 5 4 2 7 7 C 1.50709 * 109.51938 * 297.74589 * 5 4 2 8 8 O 1.21281 * 119.99896 * 359.68932 * 7 5 4 9 9 N 1.34773 * 119.99542 * 179.68388 * 7 5 4 10 10 C 1.46506 * 119.99781 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.46878 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00546 * 0.27446 * 11 10 9 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 C 1.53118 * 109.16317 * 57.65098 * 5 4 2 20 20 C 1.53036 * 109.28073 * 302.34907 * 19 5 4 21 21 N 1.46846 * 109.52547 * 59.17595 * 20 19 5 22 22 H 1.09000 * 109.47091 * 300.03197 * 1 2 3 23 23 H 1.09012 * 109.47112 * 60.02287 * 1 2 3 24 24 H 1.08996 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.50442 * 60.86992 * 4 2 1 26 26 H 1.08994 * 109.50332 * 300.74748 * 4 2 1 27 27 H 0.97000 * 120.00554 * 359.97438 * 9 7 5 28 28 H 1.08992 * 109.47424 * 59.99984 * 10 9 7 29 29 H 1.08997 * 109.46711 * 299.99585 * 10 9 7 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.50000 * 62.28609 * 19 5 4 32 32 H 1.08996 * 109.50129 * 182.36619 * 19 5 4 33 33 H 1.08997 * 109.46335 * 179.19749 * 20 19 5 34 34 H 1.09001 * 109.46143 * 299.16535 * 20 19 5 35 35 H 1.00902 * 110.99952 * 62.35440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5709 -0.7361 -1.2356 6 1 3.9388 -1.2857 -2.1020 7 6 4.0891 0.6784 -1.2793 8 8 3.3113 1.6080 -1.3239 9 7 5.4166 0.9103 -1.2688 10 6 5.9203 2.2855 -1.3107 11 6 7.4271 2.2693 -1.2893 12 1 7.9567 1.3287 -1.2531 13 6 8.1297 3.4552 -1.3223 14 7 9.4447 3.4412 -1.3032 15 14 7.2139 5.0818 -1.3927 16 1 6.9525 5.5628 -0.0124 17 1 8.0373 6.0824 -2.1180 18 1 5.9240 4.8932 -2.1038 19 6 4.0547 -1.4189 0.0466 20 6 3.4864 -0.6779 1.2590 21 7 2.0192 -0.6918 1.1993 22 1 -0.3633 0.5143 0.8897 23 1 -0.3634 0.5135 -0.8903 24 1 -0.3634 -1.0276 0.0005 25 1 1.6895 -0.1981 -2.1400 26 1 1.6658 -1.7446 -1.2578 27 1 6.0387 0.1669 -1.2327 28 1 5.5503 2.8345 -0.4449 29 1 5.5755 2.7710 -2.2235 30 1 9.9389 4.2755 -1.3260 31 1 3.7123 -2.4537 0.0593 32 1 5.1438 -1.3954 0.0827 33 1 3.8174 -1.1701 2.1735 34 1 3.8403 0.3531 1.2532 35 1 1.6646 -1.6355 1.2424 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235271722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:57 Heat of formation + Delta-G solvation = -55.095697 kcal Electronic energy + Delta-G solvation = -16226.256269 eV Core-core repulsion = 13644.183501 eV Total energy + Delta-G solvation = -2582.072768 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20413 -37.44028 -34.38025 -32.93733 -32.11065 -31.61821 -27.97375 -26.98666 -23.98517 -22.43130 -21.60252 -20.83756 -19.35423 -17.09046 -16.07858 -15.71649 -15.29742 -14.90909 -14.58611 -14.33353 -13.99887 -13.50878 -13.26578 -12.73773 -12.45812 -12.27476 -12.08298 -11.79663 -11.70135 -11.43652 -11.02403 -10.94479 -10.81628 -10.67304 -10.38845 -9.98015 -9.51044 -9.05505 -8.78890 -8.26346 -8.14618 -6.23074 -4.25357 3.19964 3.26162 3.32373 3.40679 3.96087 4.30987 4.32106 4.73791 4.86183 4.97433 5.09802 5.12451 5.35138 5.41240 5.51521 5.61390 5.71059 5.76459 5.82197 5.96347 6.01248 6.05830 6.18438 6.27359 6.46665 6.79921 7.05550 7.14541 7.21484 7.38031 7.51372 8.11860 8.50226 8.73517 8.92355 9.37216 10.88896 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.041726 B = 0.006741 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.877452 B = 4152.795939 C = 4416.480632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.110 0.890 4 C -0.127 4.127 5 C -0.112 4.112 6 H 0.092 0.908 7 C 0.506 3.494 8 O -0.554 6.554 9 N -0.704 5.704 10 C 0.220 3.780 11 C -0.544 4.544 12 H 0.079 0.921 13 C 0.078 3.922 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 C -0.148 4.148 20 C 0.054 3.946 21 N -0.680 5.680 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.395 0.605 28 H 0.020 0.980 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 -10.509 2.121 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 H 0.128 0.872 4 C -0.166 4.166 5 C -0.134 4.134 6 H 0.110 0.890 7 C 0.291 3.709 8 O -0.434 6.434 9 N -0.352 5.352 10 C 0.098 3.902 11 C -0.582 4.582 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.530 5.530 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.185 1.185 19 C -0.187 4.187 20 C -0.075 4.075 21 N -0.309 5.309 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.561 -9.129 2.504 16.538 hybrid contribution 0.412 -0.211 -0.853 0.970 sum -13.149 -9.340 1.651 16.213 Atomic orbital electron populations 1.21758 0.94859 1.01144 1.01990 1.21894 0.94796 1.00717 0.86645 0.87203 1.22020 0.93275 1.00381 1.00948 1.21397 0.97382 0.94841 0.99735 0.89035 1.20419 0.83055 0.90607 0.76847 1.90586 1.56124 1.45622 1.51057 1.46209 1.05763 1.11043 1.72185 1.19480 0.95053 0.78958 0.96695 1.21092 0.88511 0.95299 1.53261 0.90306 1.24799 0.94768 0.99181 0.93850 1.69883 1.05864 1.27800 1.49404 0.86817 0.80458 0.83350 0.79073 1.19819 1.20884 1.18550 1.22241 1.01972 0.99421 0.95100 1.22031 0.87518 1.01428 0.96550 1.60736 1.08494 1.21521 1.40114 0.92129 0.92252 0.93416 0.90834 0.92065 0.77113 0.96190 0.95815 0.92254 0.91290 0.90588 0.90576 0.90480 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.47 37.16 0.35 -1.24 16 2 C 0.07 0.94 2.76 -67.72 -0.19 0.76 16 3 H 0.11 1.95 5.73 -51.93 -0.30 1.65 16 4 C -0.13 -1.62 4.50 -26.64 -0.12 -1.74 16 5 C -0.11 -1.54 3.03 -91.64 -0.28 -1.81 16 6 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 7 C 0.51 9.44 5.76 -10.98 -0.06 9.37 16 8 O -0.55 -12.18 13.81 5.56 0.08 -12.10 16 9 N -0.70 -14.14 5.43 -61.47 -0.33 -14.47 16 10 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 11 C -0.54 -14.91 9.83 -34.44 -0.34 -15.24 16 12 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 14 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 15 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 19 C -0.15 -1.74 5.51 -26.65 -0.15 -1.89 16 20 C 0.05 0.71 6.35 -3.84 -0.02 0.69 16 21 N -0.68 -8.58 6.50 -106.76 -0.69 -9.28 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.40 7.07 7.71 -40.82 -0.31 6.76 16 28 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 29 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.25 7.31 -51.93 -0.38 0.88 16 35 H 0.33 3.47 8.79 -39.29 -0.35 3.12 16 LS Contribution 278.09 15.07 4.19 4.19 Total: -1.00 -30.79 278.09 -7.03 -37.82 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.45 Total: 6.31 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.93 Total: -3.61 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.25 Total: -49.48 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.79 -7.03 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235271722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.278 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds