Wall clock time and date at job start Mon Mar 30 2020 03:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.50471 * 2 1 4 4 C 1.53118 * 109.53712 * 120.10034 * 2 1 3 5 5 C 1.53120 * 109.16023 * 177.61074 * 4 2 1 6 6 C 1.53035 * 109.28192 * 302.34521 * 5 4 2 7 7 N 1.46845 * 109.51971 * 59.17771 * 6 5 4 8 8 C 1.46845 * 111.20228 * 298.25992 * 7 6 5 9 9 H 1.08994 * 109.46209 * 181.76444 * 8 7 6 10 10 C 1.50700 * 109.45083 * 301.73319 * 8 7 6 11 11 O 1.21288 * 120.00163 * 10.46607 * 10 8 7 12 12 N 1.34773 * 120.00274 * 190.47209 * 10 8 7 13 13 C 1.46499 * 120.00500 * 179.97438 * 12 10 8 14 14 C 1.50694 * 109.47335 * 179.97438 * 13 12 10 15 15 H 1.08003 * 120.00097 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00150 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99847 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00202 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46645 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.46893 * 119.99669 * 18 16 14 21 21 H 1.48494 * 109.47085 * 240.00109 * 18 16 14 22 22 H 1.09003 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46636 * 299.99520 * 1 2 3 24 24 H 1.08991 * 109.47232 * 59.99834 * 1 2 3 25 25 H 1.09003 * 109.52409 * 297.51697 * 4 2 1 26 26 H 1.09003 * 109.52454 * 57.71209 * 4 2 1 27 27 H 1.09007 * 109.50390 * 182.39967 * 5 4 2 28 28 H 1.09002 * 109.50373 * 62.28918 * 5 4 2 29 29 H 1.08995 * 109.46168 * 299.16535 * 6 5 4 30 30 H 1.08999 * 109.45315 * 179.18957 * 6 5 4 31 31 H 1.00906 * 110.99907 * 174.15857 * 7 6 5 32 32 H 0.97007 * 119.99541 * 359.97438 * 12 10 8 33 33 H 1.08998 * 109.47199 * 300.00191 * 13 12 10 34 34 H 1.09004 * 109.46857 * 59.99776 * 13 12 10 35 35 H 0.97001 * 119.99925 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 1.2484 5 6 3.5720 -0.7710 1.2098 6 6 4.0237 -1.4717 -0.0735 7 7 3.5092 -0.7409 -1.2387 8 6 2.0409 -0.7230 -1.2483 9 1 1.6899 -0.2019 -2.1390 10 6 1.5218 -2.1377 -1.2570 11 8 2.2813 -3.0636 -1.0645 12 7 0.2136 -2.3742 -1.4786 13 6 -0.2910 -3.7496 -1.4876 14 6 -1.7740 -3.7388 -1.7549 15 1 -2.2891 -2.8013 -1.9037 16 6 -2.4733 -4.9259 -1.8095 17 7 -1.8461 -6.0674 -1.6278 18 14 -4.3115 -4.9127 -2.1415 19 1 -4.7742 -3.5115 -2.3085 20 1 -4.5961 -5.6795 -3.3809 21 1 -5.0255 -5.5363 -0.9985 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.7165 -0.1872 2.1397 26 1 1.6467 -1.7393 1.2687 27 1 3.9410 -1.3224 2.0747 28 1 3.9681 0.2443 1.2289 29 1 3.6388 -2.4913 -0.0854 30 1 5.1128 -1.4941 -0.1108 31 1 3.8718 -1.1278 -2.0972 32 1 -0.3939 -1.6337 -1.6323 33 1 0.2152 -4.3172 -2.2684 34 1 -0.0999 -4.2129 -0.5196 35 1 -2.3380 -6.9026 -1.6666 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235568819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:06 Heat of formation + Delta-G solvation = -66.389935 kcal Electronic energy + Delta-G solvation = -16459.613869 eV Core-core repulsion = 13877.051347 eV Total energy + Delta-G solvation = -2582.562523 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.69399 -38.30452 -36.41871 -34.77946 -33.62783 -32.65405 -29.40995 -27.72785 -25.69579 -24.26635 -22.71166 -21.94051 -20.79554 -18.59549 -17.80465 -17.16394 -17.05553 -16.41752 -16.02354 -15.47281 -15.06782 -14.80973 -14.79750 -14.11714 -13.97378 -13.84606 -13.27058 -12.91391 -12.85062 -12.77616 -12.67718 -12.25768 -11.92291 -11.79149 -11.46940 -11.35024 -11.27093 -11.06299 -10.82241 -9.79950 -9.17784 -8.31504 -6.48599 1.41490 1.42448 1.56080 1.70212 2.31021 2.60341 3.03278 3.18385 3.75221 3.86798 3.98001 4.02015 4.26155 4.43119 4.59491 4.68606 4.72127 4.90886 4.97916 5.00844 5.06944 5.13038 5.20245 5.21307 5.22116 5.37433 5.46530 5.56398 5.70924 5.82720 5.93337 6.30992 6.63052 6.87859 7.21225 7.47046 8.80617 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.006834 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.921539 B = 4096.002837 C = 4365.466246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.067 4.067 3 H 0.112 0.888 4 C -0.122 4.122 5 C -0.108 4.108 6 C 0.018 3.982 7 N -0.651 5.651 8 C 0.077 3.923 9 H 0.126 0.874 10 C 0.469 3.531 11 O -0.595 6.595 12 N -0.702 5.702 13 C 0.266 3.734 14 C -0.555 4.555 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.984 3.016 19 H -0.251 1.251 20 H -0.279 1.279 21 H -0.279 1.279 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.344 0.656 32 H 0.408 0.592 33 H -0.016 1.016 34 H -0.017 1.017 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.026 15.162 2.696 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.086 4.086 3 H 0.130 0.870 4 C -0.160 4.160 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.279 5.279 8 C -0.037 4.037 9 H 0.144 0.856 10 C 0.256 3.744 11 O -0.478 6.478 12 N -0.354 5.354 13 C 0.143 3.857 14 C -0.592 4.592 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.175 1.175 20 H -0.204 1.204 21 H -0.205 1.205 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.246 0.754 33 H 0.002 0.998 34 H 0.001 0.999 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.594 14.951 3.133 16.267 hybrid contribution -1.101 -1.669 -0.474 2.055 sum 4.493 13.282 2.658 14.271 Atomic orbital electron populations 1.22238 0.94247 1.02445 1.04003 1.21089 0.95800 1.00315 0.91422 0.86989 1.21696 0.96447 0.99031 0.98801 1.21520 0.95051 1.01613 0.96389 1.22471 0.99702 0.98047 0.90869 1.60811 1.04398 1.56446 1.06231 1.21942 0.89804 0.89417 1.02567 0.85591 1.22879 0.82280 0.93784 0.75455 1.90490 1.56813 1.48318 1.52185 1.46719 1.09057 1.10070 1.69575 1.18496 0.93996 0.79441 0.93771 1.21641 0.92674 0.94279 1.50642 0.89861 1.26075 1.04777 0.94604 0.94134 1.70146 1.38725 0.98630 1.49523 0.85123 0.77275 0.79214 0.77707 1.17478 1.20424 1.20458 0.93593 0.90441 0.90110 0.89776 0.95878 0.91596 0.89860 0.93003 0.90363 0.83875 0.75361 0.99828 0.99923 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 7.95 71.98 0.57 -3.38 16 2 C -0.07 -1.60 2.66 -10.74 -0.03 -1.63 16 3 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -3.28 5.04 30.67 0.15 -3.12 16 5 C -0.11 -2.70 6.09 30.65 0.19 -2.51 16 6 C 0.02 0.53 6.16 86.33 0.53 1.06 16 7 N -0.65 -17.74 6.54 -495.59 -3.24 -20.98 16 8 C 0.08 2.16 3.09 44.19 0.14 2.30 16 9 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 10 C 0.47 18.72 5.54 87.66 0.49 19.21 16 11 O -0.60 -28.92 13.32 -3.06 -0.04 -28.96 16 12 N -0.70 -29.80 4.17 -466.79 -1.95 -31.75 16 13 C 0.27 14.74 5.43 85.63 0.46 15.20 16 14 C -0.55 -30.27 9.28 25.60 0.24 -30.03 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 18 Si 0.98 42.30 29.54 68.60 2.03 44.33 16 19 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H 0.05 1.39 5.33 -2.39 -0.01 1.38 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.02 0.80 7.31 -2.39 -0.02 0.78 16 27 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 2.02 4.82 -8.41 -0.04 1.97 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.34 9.27 8.89 -89.69 -0.80 8.47 16 32 H 0.41 14.56 6.16 -92.70 -0.57 13.99 16 33 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 34 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.13 274.70 -0.02 -69.15 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.31 Total: 26.70 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 3.20 Total: -2.24 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.90 Total: -108.98 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.04 Total: -28.96 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.13 -0.02 -69.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235568819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds