Wall clock time and date at job start Mon Mar 30 2020 03:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45306 * 2 1 4 4 C 1.53044 * 109.46137 * 119.96842 * 2 1 3 5 5 C 1.53121 * 109.27467 * 179.19741 * 4 2 1 6 6 H 1.08999 * 109.57127 * 182.41508 * 5 4 2 7 7 C 1.50690 * 109.52449 * 62.25277 * 5 4 2 8 8 O 1.21287 * 120.00086 * 0.31195 * 7 5 4 9 9 N 1.34775 * 120.00262 * 180.31504 * 7 5 4 10 10 C 1.46495 * 120.00477 * 179.97438 * 9 7 5 11 11 C 1.50704 * 109.47645 * 180.02562 * 10 9 7 12 12 H 1.07997 * 119.99180 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00402 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99699 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00038 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47087 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47372 * 120.00036 * 15 13 11 18 18 H 1.48504 * 109.46622 * 239.99693 * 15 13 11 19 19 C 1.53118 * 109.15998 * 302.34543 * 5 4 2 20 20 C 1.53034 * 109.28068 * 57.65604 * 19 5 4 21 21 N 1.46847 * 109.46201 * 240.02281 * 2 1 3 22 22 H 1.09000 * 109.46931 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47201 * 299.97811 * 1 2 3 24 24 H 1.09002 * 109.47357 * 59.97693 * 1 2 3 25 25 H 1.08996 * 109.50067 * 59.25556 * 4 2 1 26 26 H 1.08993 * 109.50192 * 299.13624 * 4 2 1 27 27 H 0.97003 * 119.99653 * 359.97438 * 9 7 5 28 28 H 1.09002 * 109.47020 * 300.00250 * 10 9 7 29 29 H 1.09006 * 109.47115 * 59.99889 * 10 9 7 30 30 H 0.97005 * 119.99755 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.50624 * 297.71626 * 19 5 4 32 32 H 1.09002 * 109.53418 * 177.61821 * 19 5 4 33 33 H 1.09000 * 109.46341 * 180.80474 * 20 19 5 34 34 H 1.09003 * 109.45147 * 60.83100 * 20 19 5 35 35 H 1.00901 * 110.99839 * 54.14718 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5710 -0.7359 1.2357 6 1 3.9389 -1.2855 2.1021 7 6 4.0890 0.6785 1.2793 8 8 3.3112 1.6081 1.3239 9 7 5.4165 0.9106 1.2688 10 6 5.9202 2.2857 1.3107 11 6 7.4270 2.2698 1.2881 12 1 7.9564 1.3294 1.2463 13 6 8.1295 3.4557 1.3209 14 7 7.4846 4.6007 1.3723 15 14 9.9971 3.4359 1.2922 16 1 10.4765 2.0316 1.2345 17 1 10.4818 4.1744 0.0985 18 1 10.5179 4.0861 2.5216 19 6 4.0548 -1.4187 -0.0466 20 6 3.4865 -0.6777 -1.2590 21 7 2.0193 -0.6918 -1.1993 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3634 0.5142 -0.8898 25 1 1.6659 -1.7446 1.2578 26 1 1.6895 -0.1980 2.1399 27 1 6.0386 0.1672 1.2335 28 1 5.5500 2.8347 0.4448 29 1 5.5752 2.7713 2.2235 30 1 7.9789 5.4351 1.3949 31 1 3.7125 -2.4535 -0.0593 32 1 5.1439 -1.3952 -0.0834 33 1 3.8175 -1.1700 -2.1734 34 1 3.8403 0.3532 -1.2530 35 1 1.6195 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235587072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:03 Heat of formation + Delta-G solvation = -81.794262 kcal Electronic energy + Delta-G solvation = -16162.296086 eV Core-core repulsion = 13579.065582 eV Total energy + Delta-G solvation = -2583.230505 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39660 -38.59136 -36.16916 -34.59365 -33.61121 -32.78969 -29.37858 -27.92542 -25.71296 -24.09404 -23.04770 -21.82691 -20.54388 -18.55346 -17.47441 -17.19490 -17.00622 -16.40776 -16.04233 -15.95055 -14.91951 -14.71515 -14.54459 -14.24122 -14.04612 -13.55005 -13.21009 -12.99592 -12.86358 -12.76726 -12.68953 -12.65450 -12.23269 -11.86090 -11.49572 -11.39197 -11.26816 -10.83696 -10.60817 -9.82867 -9.33991 -8.32049 -6.48978 1.41460 1.42635 1.56331 1.78054 2.30957 2.60008 3.03032 3.25958 3.72562 3.82098 3.87300 4.18786 4.29053 4.44853 4.54301 4.63684 4.75438 4.80904 4.93488 4.95443 5.03614 5.07287 5.16224 5.19232 5.20538 5.26810 5.39370 5.50570 5.68918 5.82923 6.08964 6.46177 6.62872 6.91220 7.21110 7.50345 8.80559 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048008 B = 0.006052 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.091284 B = 4625.299649 C = 4810.788593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.023 0.977 4 C -0.085 4.085 5 C -0.106 4.106 6 H 0.121 0.879 7 C 0.497 3.503 8 O -0.597 6.597 9 N -0.707 5.707 10 C 0.269 3.731 11 C -0.554 4.554 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.100 4.100 20 C 0.051 3.949 21 N -0.674 5.674 22 H 0.075 0.925 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.056 0.944 27 H 0.406 0.594 28 H -0.018 1.018 29 H -0.016 1.016 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.097 0.903 34 H -0.008 1.008 35 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -14.940 -3.329 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 H 0.041 0.959 4 C -0.123 4.123 5 C -0.128 4.128 6 H 0.139 0.861 7 C 0.285 3.715 8 O -0.479 6.479 9 N -0.357 5.357 10 C 0.146 3.854 11 C -0.592 4.592 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.138 4.138 20 C -0.079 4.079 21 N -0.305 5.305 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.242 0.758 28 H 0.000 1.000 29 H 0.002 0.998 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.011 0.989 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.779 -14.710 -2.995 16.908 hybrid contribution 1.214 1.684 -0.177 2.083 sum -6.565 -13.026 -3.172 14.928 Atomic orbital electron populations 1.21718 0.92974 1.02847 1.01680 1.21679 0.96277 0.95562 0.90976 0.95871 1.21389 0.92138 1.01804 0.96936 1.21527 0.98114 0.90872 1.02249 0.86067 1.21550 0.82151 0.92748 0.75076 1.90586 1.57015 1.47919 1.52426 1.46227 1.06823 1.09880 1.72741 1.18483 0.94096 0.79222 0.93639 1.21648 0.90726 0.94206 1.52640 0.89790 1.26092 1.05215 0.94563 0.93796 1.70153 1.38414 0.98549 1.50045 0.85093 0.77115 0.79200 0.77707 1.17494 1.20434 1.20418 1.21599 1.00684 1.00674 0.90837 1.21981 0.88422 0.97238 1.00212 1.60514 1.06574 1.58609 1.04847 0.90591 0.92504 0.92607 0.88242 0.92477 0.75811 1.00031 0.99794 0.92255 0.87425 0.90205 0.88509 0.98925 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.43 71.98 0.68 -2.41 16 2 C 0.06 1.87 2.76 44.94 0.12 1.99 16 3 H 0.02 0.91 5.73 -2.39 -0.01 0.90 16 4 C -0.08 -2.26 4.52 30.65 0.14 -2.12 16 5 C -0.11 -2.95 3.03 -11.46 -0.03 -2.99 16 6 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 7 C 0.50 20.21 5.76 87.65 0.50 20.71 16 8 O -0.60 -29.87 13.81 -3.05 -0.04 -29.91 16 9 N -0.71 -30.44 5.43 -466.79 -2.53 -32.98 16 10 C 0.27 15.03 5.43 85.64 0.46 15.50 16 11 C -0.55 -30.46 9.28 25.60 0.24 -30.23 16 12 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 15 Si 0.99 42.48 29.54 68.60 2.03 44.51 16 16 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 19 C -0.10 -2.29 5.52 30.65 0.17 -2.12 16 20 C 0.05 1.35 6.34 86.32 0.55 1.89 16 21 N -0.67 -16.88 6.50 -491.67 -3.20 -20.07 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 27 H 0.41 14.52 7.72 -92.71 -0.72 13.80 16 28 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 30 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.71 7.51 -2.39 -0.02 1.69 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H -0.01 -0.27 7.31 -2.39 -0.02 -0.28 16 35 H 0.34 7.84 8.79 -89.69 -0.79 7.05 16 Total: -1.00 -71.23 281.69 -0.59 -71.82 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.42 Total: 22.45 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 3.29 Total: 0.84 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -5.45 Total: -109.72 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.04 Total: -29.91 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -71.23 -0.59 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235587072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.972 kcal (2) G-P(sol) polarization free energy of solvation -71.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds