Wall clock time and date at job start Mon Mar 30 2020 02:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47193 * 2 1 4 4 H 1.09001 * 109.38889 * 176.80959 * 3 2 1 5 5 C 1.50254 * 109.38625 * 296.49612 * 3 2 1 6 6 O 1.21278 * 118.62533 * 317.35844 * 5 3 2 7 7 N 1.33724 * 122.75235 * 137.35777 * 5 3 2 8 8 C 1.46008 * 122.92267 * 358.31330 * 7 5 3 9 9 C 1.52985 * 110.04665 * 18.16406 * 8 7 5 10 10 N 1.46903 * 109.39058 * 57.01517 * 3 2 1 11 11 C 1.46896 * 110.99847 * 66.17775 * 10 3 2 12 12 H 1.09000 * 109.47066 * 308.05682 * 11 10 3 13 13 C 1.53003 * 109.47162 * 188.06411 * 11 10 3 14 14 C 1.50695 * 109.47329 * 68.06295 * 11 10 3 15 15 H 1.08001 * 120.00046 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00230 * 180.02562 * 14 11 10 17 17 N 1.31510 * 119.99916 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 120.00232 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47381 * 59.99251 * 18 16 14 20 20 H 1.48495 * 109.47525 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46891 * 299.99639 * 18 16 14 22 22 H 1.09001 * 109.46972 * 295.35836 * 1 2 3 23 23 H 1.08997 * 109.47303 * 175.35423 * 1 2 3 24 24 H 1.08999 * 109.46760 * 55.35413 * 1 2 3 25 25 H 1.09003 * 109.47021 * 120.00157 * 2 1 3 26 26 H 1.09003 * 109.46891 * 239.99506 * 2 1 3 27 27 H 0.96999 * 118.53534 * 178.30966 * 7 5 3 28 28 H 1.08996 * 109.37793 * 257.98218 * 8 7 5 29 29 H 1.09001 * 109.27709 * 138.28032 * 8 7 5 30 30 H 1.08991 * 109.59323 * 189.93548 * 9 8 7 31 31 H 1.08992 * 109.59413 * 69.47532 * 9 8 7 32 32 H 1.09003 * 109.47444 * 173.25346 * 13 11 10 33 33 H 1.09003 * 109.46863 * 293.25077 * 13 11 10 34 34 H 1.09000 * 109.47272 * 53.24402 * 13 11 10 35 35 H 0.97003 * 120.00128 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1286 1.4414 0.0572 5 6 1.6101 2.1234 -1.2685 6 8 1.6968 1.5138 -2.3133 7 7 1.1359 3.3735 -1.2936 8 6 0.9584 4.1792 -0.0890 9 6 1.7811 3.5931 1.0599 10 7 1.4914 2.1537 1.1624 11 6 2.0184 1.5986 2.4161 12 1 1.8720 0.5185 2.4251 13 6 1.2789 2.2231 3.6011 14 6 3.4895 1.9071 2.5230 15 1 3.9837 2.4600 1.7378 16 6 4.2049 1.4828 3.6226 17 7 3.6032 0.8091 4.5785 18 14 6.0286 1.8646 3.7547 19 1 6.2284 3.3361 3.7427 20 1 6.5613 1.3036 5.0222 21 1 6.7458 1.2583 2.6044 22 1 -0.3633 0.4401 0.9287 23 1 -0.3634 -1.0242 -0.0832 24 1 -0.3633 0.5842 -0.8455 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.8995 3.7623 -2.1502 28 1 -0.0956 4.1875 0.1885 29 1 1.2883 5.1992 -0.2864 30 1 1.5105 4.0877 1.9927 31 1 2.8427 3.7390 0.8608 32 1 1.5839 1.7267 4.5223 33 1 1.5217 3.2840 3.6625 34 1 0.2043 2.1038 3.4625 35 1 4.1064 0.5109 5.3523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251542430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:32 Heat of formation + Delta-G solvation = -34.871782 kcal Electronic energy + Delta-G solvation = -16952.680385 eV Core-core repulsion = 14371.484592 eV Total energy + Delta-G solvation = -2581.195793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.03835 -37.03061 -34.95452 -33.29214 -31.73025 -29.18513 -28.33811 -25.21644 -25.00175 -23.39108 -21.28149 -19.80345 -18.26908 -16.94266 -16.35733 -15.89023 -15.25915 -14.80428 -14.33737 -13.75255 -13.46418 -13.38131 -12.78422 -12.62881 -11.91064 -11.78797 -11.51179 -11.16577 -11.04300 -11.00275 -10.68483 -10.57483 -10.42156 -10.16207 -10.00106 -9.85298 -9.39273 -9.04616 -8.72812 -8.45785 -7.37451 -6.08618 -4.21100 3.10961 3.23371 3.29132 3.31756 3.69969 4.33210 4.74660 5.09669 5.19762 5.33532 5.57689 5.68827 5.69955 5.86280 6.02203 6.23088 6.39086 6.42196 6.52280 6.61045 6.80125 6.82870 6.90301 6.98465 7.07788 7.11673 7.41123 7.60811 7.67575 7.79578 8.02064 8.10430 8.29150 8.65778 8.86382 9.47232 10.92734 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.009655 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.253603 B = 2899.245759 C = 2972.362729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.073 3.927 4 H 0.082 0.918 5 C 0.532 3.468 6 O -0.567 6.567 7 N -0.722 5.722 8 C 0.114 3.886 9 C 0.040 3.960 10 N -0.521 5.521 11 C 0.204 3.796 12 H 0.049 0.951 13 C -0.127 4.127 14 C -0.550 4.550 15 H 0.055 0.945 16 C 0.073 3.927 17 N -0.883 5.883 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.277 1.277 22 H 0.066 0.934 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.390 0.610 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.016 0.984 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 4.659 -5.222 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.038 4.038 4 H 0.099 0.901 5 C 0.319 3.681 6 O -0.445 6.445 7 N -0.374 5.374 8 C -0.011 4.011 9 C -0.089 4.089 10 N -0.247 5.247 11 C 0.098 3.902 12 H 0.066 0.934 13 C -0.185 4.185 14 C -0.589 4.589 15 H 0.073 0.927 16 C -0.131 4.131 17 N -0.521 5.521 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 H 0.085 0.915 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.224 0.776 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.267 4.080 -5.344 8.540 hybrid contribution 1.942 0.686 -0.076 2.061 sum -3.325 4.766 -5.419 7.946 Atomic orbital electron populations 1.21600 0.95693 0.99973 1.02058 1.21361 0.96473 0.93568 1.02418 1.21577 0.99583 0.94917 0.87760 0.90094 1.20532 0.75198 0.80952 0.91387 1.90663 1.56079 1.63788 1.34015 1.45604 1.66384 1.15095 1.10285 1.21613 1.00827 0.93562 0.85079 1.22305 0.97737 0.91281 0.97565 1.63089 1.57312 1.01195 1.03127 1.19387 0.91809 0.95604 0.83390 0.93367 1.21765 0.95938 0.99230 1.01545 1.21622 0.94893 1.36858 1.05563 0.92732 1.24867 0.98033 0.94561 0.95615 1.69871 1.35975 1.37029 1.09204 0.86739 0.85690 0.78643 0.77448 1.20334 1.21180 1.20289 0.91464 0.93975 0.93987 0.90293 0.91681 0.77591 0.91623 0.91386 0.88836 0.93682 0.90042 0.95339 0.96446 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.52 37.16 0.35 -1.99 16 2 C -0.10 -1.89 5.21 -26.73 -0.14 -2.03 16 3 C 0.07 1.45 2.05 -69.08 -0.14 1.31 16 4 H 0.08 1.78 6.85 -51.93 -0.36 1.42 16 5 C 0.53 10.02 6.20 -11.67 -0.07 9.95 16 6 O -0.57 -12.05 17.00 5.56 0.09 -11.96 16 7 N -0.72 -11.04 5.52 -61.06 -0.34 -11.38 16 8 C 0.11 1.56 7.39 -4.32 -0.03 1.52 16 9 C 0.04 0.69 4.78 -3.67 -0.02 0.68 16 10 N -0.52 -10.20 3.63 -221.52 -0.80 -11.01 16 11 C 0.20 4.67 2.19 -68.87 -0.15 4.52 16 12 H 0.05 1.22 6.20 -51.93 -0.32 0.90 16 13 C -0.13 -2.82 8.63 37.16 0.32 -2.50 16 14 C -0.55 -13.84 7.07 -34.44 -0.24 -14.08 16 15 H 0.05 1.38 5.88 -52.49 -0.31 1.07 16 16 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 17 N -0.88 -23.76 11.40 55.43 0.63 -23.13 16 18 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.74 7.18 -51.93 -0.37 0.36 16 25 H 0.08 1.57 6.53 -51.93 -0.34 1.23 16 26 H 0.06 1.21 7.71 -51.93 -0.40 0.81 16 27 H 0.39 5.12 8.84 -40.82 -0.36 4.76 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.61 6.13 -51.93 -0.32 1.29 16 31 H 0.04 0.86 6.65 -51.93 -0.35 0.51 16 32 H 0.08 2.01 6.28 -51.93 -0.33 1.68 16 33 H 0.03 0.60 6.61 -51.93 -0.34 0.26 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -27.92 270.17 -6.60 -34.52 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.02 Total: 4.31 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.22 Total: -0.84 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.51 Total: -45.51 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.92 -6.60 -34.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251542430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.356 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds