Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.47193 * 2 1 4 4 H 1.09001 * 109.38889 * 176.80959 * 3 2 1 5 5 C 1.50254 * 109.38625 * 296.49612 * 3 2 1 6 6 O 1.21278 * 118.62533 * 317.35844 * 5 3 2 7 7 N 1.33724 * 122.75235 * 137.35777 * 5 3 2 8 8 C 1.46008 * 122.92267 * 358.31330 * 7 5 3 9 9 C 1.52985 * 110.04665 * 18.16406 * 8 7 5 10 10 N 1.46903 * 109.39058 * 57.01517 * 3 2 1 11 11 C 1.46896 * 110.99847 * 66.17775 * 10 3 2 12 12 H 1.09000 * 109.47066 * 308.05682 * 11 10 3 13 13 C 1.53003 * 109.47162 * 188.06411 * 11 10 3 14 14 C 1.50695 * 109.47329 * 68.06295 * 11 10 3 15 15 H 1.08001 * 120.00046 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00230 * 180.02562 * 14 11 10 17 17 N 1.31510 * 119.99916 * 359.97438 * 16 14 11 18 18 Si 1.86794 * 120.00232 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47381 * 59.99251 * 18 16 14 20 20 H 1.48495 * 109.47525 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46891 * 299.99639 * 18 16 14 22 22 H 1.09001 * 109.46972 * 295.35836 * 1 2 3 23 23 H 1.08997 * 109.47303 * 175.35423 * 1 2 3 24 24 H 1.08999 * 109.46760 * 55.35413 * 1 2 3 25 25 H 1.09003 * 109.47021 * 120.00157 * 2 1 3 26 26 H 1.09003 * 109.46891 * 239.99506 * 2 1 3 27 27 H 0.96999 * 118.53534 * 178.30966 * 7 5 3 28 28 H 1.08996 * 109.37793 * 257.98218 * 8 7 5 29 29 H 1.09001 * 109.27709 * 138.28032 * 8 7 5 30 30 H 1.08991 * 109.59323 * 189.93548 * 9 8 7 31 31 H 1.08992 * 109.59413 * 69.47532 * 9 8 7 32 32 H 1.09003 * 109.47444 * 173.25346 * 13 11 10 33 33 H 1.09003 * 109.46863 * 293.25077 * 13 11 10 34 34 H 1.09000 * 109.47272 * 53.24402 * 13 11 10 35 35 H 0.97003 * 120.00128 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1286 1.4414 0.0572 5 6 1.6101 2.1234 -1.2685 6 8 1.6968 1.5138 -2.3133 7 7 1.1359 3.3735 -1.2936 8 6 0.9584 4.1792 -0.0890 9 6 1.7811 3.5931 1.0599 10 7 1.4914 2.1537 1.1624 11 6 2.0184 1.5986 2.4161 12 1 1.8720 0.5185 2.4251 13 6 1.2789 2.2231 3.6011 14 6 3.4895 1.9071 2.5230 15 1 3.9837 2.4600 1.7378 16 6 4.2049 1.4828 3.6226 17 7 3.6032 0.8091 4.5785 18 14 6.0286 1.8646 3.7547 19 1 6.2284 3.3361 3.7427 20 1 6.5613 1.3036 5.0222 21 1 6.7458 1.2583 2.6044 22 1 -0.3633 0.4401 0.9287 23 1 -0.3634 -1.0242 -0.0832 24 1 -0.3633 0.5842 -0.8455 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.8995 3.7623 -2.1502 28 1 -0.0956 4.1875 0.1885 29 1 1.2883 5.1992 -0.2864 30 1 1.5105 4.0877 1.9927 31 1 2.8427 3.7390 0.8608 32 1 1.5839 1.7267 4.5223 33 1 1.5217 3.2840 3.6625 34 1 0.2043 2.1038 3.4625 35 1 4.1064 0.5109 5.3523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251542430.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = -54.518572 kcal Electronic energy + Delta-G solvation = -16953.532333 eV Core-core repulsion = 14371.484592 eV Total energy + Delta-G solvation = -2582.047742 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.53298 -38.64862 -36.36685 -35.07010 -33.42427 -30.86004 -29.77091 -27.18131 -26.52774 -24.88021 -22.72330 -21.56393 -19.83560 -18.38858 -17.99401 -17.55663 -16.90606 -16.49002 -15.80652 -15.37973 -15.01128 -14.88672 -14.51199 -14.09987 -13.44726 -13.31059 -13.24680 -12.93642 -12.72923 -12.61041 -12.31941 -12.22853 -12.14717 -11.83998 -11.68418 -11.53790 -11.17352 -10.67812 -10.43034 -10.00685 -9.07882 -8.05700 -6.24837 1.38480 1.41142 1.46546 1.61076 2.38652 2.40810 3.14939 3.20773 3.67784 4.02451 4.12727 4.29883 4.43068 4.46959 4.63130 4.83111 4.86440 4.91358 5.08067 5.14100 5.16414 5.18484 5.26332 5.33156 5.46778 5.55088 5.70168 5.89622 6.00588 6.15014 6.26662 6.29360 6.51345 6.92125 7.25729 7.45918 8.92198 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029397 B = 0.009655 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.253603 B = 2899.245759 C = 2972.362729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.099 4.099 3 C 0.073 3.927 4 H 0.053 0.947 5 C 0.532 3.468 6 O -0.595 6.595 7 N -0.707 5.707 8 C 0.120 3.880 9 C 0.034 3.966 10 N -0.512 5.512 11 C 0.209 3.791 12 H 0.020 0.980 13 C -0.114 4.114 14 C -0.553 4.553 15 H 0.048 0.952 16 C 0.029 3.971 17 N -0.907 5.907 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.281 1.281 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.406 0.594 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 6.219 -5.933 10.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 C -0.039 4.039 4 H 0.070 0.930 5 C 0.320 3.680 6 O -0.476 6.476 7 N -0.359 5.359 8 C -0.004 4.004 9 C -0.094 4.094 10 N -0.238 5.238 11 C 0.103 3.897 12 H 0.038 0.962 13 C -0.172 4.172 14 C -0.592 4.592 15 H 0.066 0.934 16 C -0.172 4.172 17 N -0.546 5.546 18 Si 0.766 3.234 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.206 1.206 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.243 0.757 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.036 5.688 -6.062 10.273 hybrid contribution 2.169 0.226 0.135 2.185 sum -3.867 5.914 -5.927 9.223 Atomic orbital electron populations 1.21484 0.94009 1.01126 1.01505 1.21317 0.97885 0.93092 1.01424 1.21518 0.97984 0.95799 0.88637 0.92986 1.20218 0.75619 0.81978 0.90234 1.90652 1.57596 1.64847 1.34493 1.45487 1.64694 1.13853 1.11816 1.21744 1.01318 0.94568 0.82760 1.22434 0.97534 0.89811 0.99635 1.63049 1.56500 1.02510 1.01723 1.19164 0.90988 0.94268 0.85326 0.96211 1.21573 0.96802 0.99012 0.99841 1.21860 0.96229 1.36127 1.05020 0.93359 1.25492 1.01304 0.94779 0.95643 1.69983 1.37046 1.37991 1.09585 0.85902 0.81782 0.78593 0.77082 1.19683 1.21034 1.20633 0.92132 0.92135 0.94072 0.92084 0.91784 0.75729 0.89623 0.87321 0.88446 0.95554 0.92664 0.94742 0.94673 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 9.52 71.98 0.69 -3.46 16 2 C -0.10 -3.77 5.21 30.59 0.16 -3.61 16 3 C 0.07 2.87 2.05 44.03 0.09 2.96 16 4 H 0.05 2.36 6.85 -2.39 -0.02 2.34 16 5 C 0.53 19.36 6.20 87.68 0.54 19.91 16 6 O -0.59 -24.71 17.00 -3.02 -0.05 -24.76 16 7 N -0.71 -19.51 5.52 -466.09 -2.57 -22.08 16 8 C 0.12 2.80 7.39 86.47 0.64 3.44 16 9 C 0.03 1.13 4.78 86.24 0.41 1.54 16 10 N -0.51 -19.68 3.63 -854.77 -3.10 -22.78 16 11 C 0.21 9.65 2.19 44.17 0.10 9.75 16 12 H 0.02 1.04 6.20 -2.39 -0.01 1.02 16 13 C -0.11 -5.02 8.63 71.98 0.62 -4.40 16 14 C -0.55 -28.09 7.07 25.60 0.18 -27.91 16 15 H 0.05 2.47 5.88 -2.91 -0.02 2.46 16 16 C 0.03 1.49 5.30 84.66 0.45 1.94 16 17 N -0.91 -49.49 11.40 21.45 0.24 -49.24 16 18 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.04 1.37 7.18 -2.39 -0.02 1.36 16 25 H 0.06 2.52 6.53 -2.39 -0.02 2.50 16 26 H 0.06 2.42 7.71 -2.39 -0.02 2.40 16 27 H 0.41 9.21 8.84 -92.71 -0.82 8.39 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.10 3.13 6.13 -2.39 -0.01 3.12 16 31 H 0.03 0.97 6.65 -2.39 -0.02 0.95 16 32 H 0.05 2.74 6.28 -2.39 -0.01 2.72 16 33 H 0.03 1.43 6.61 -2.39 -0.02 1.41 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -59.81 270.17 0.70 -59.12 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.27 Total: 15.47 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 3.88 Total: 0.16 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -5.43 Total: -94.10 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.76 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -59.81 0.70 -59.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251542430.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.598 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds