Wall clock time and date at job start Mon Mar 30 2020 04:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52407 * 1 3 3 H 1.11649 * 106.33527 * 2 1 4 4 C 1.51909 * 112.33679 * 116.40410 * 2 1 3 5 5 C 1.51155 * 113.71373 * 57.06576 * 4 2 1 6 6 N 1.46542 * 113.36289 * 73.93830 * 5 4 2 7 7 C 1.46918 * 110.50888 * 155.57553 * 6 5 4 8 8 C 1.47260 * 112.34170 * 279.80257 * 6 5 4 9 9 H 1.10921 * 106.54482 * 194.12390 * 8 6 5 10 10 C 1.49228 * 113.42905 * 312.51195 * 8 6 5 11 11 H 1.07992 * 119.99889 * 0.02562 * 10 8 6 12 12 C 1.37876 * 119.99927 * 179.97438 * 10 8 6 13 13 N 1.31513 * 120.00072 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99736 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47121 * 90.00704 * 14 12 10 16 16 H 1.48506 * 109.47016 * 210.00472 * 14 12 10 17 17 H 1.48501 * 109.47418 * 330.00157 * 14 12 10 18 18 C 1.51149 * 108.88006 * 78.96563 * 8 6 5 19 19 O 1.23312 * 116.26358 * 123.70934 * 18 8 6 20 20 N 1.32272 * 127.50679 * 303.84938 * 18 8 6 21 21 C 1.48654 * 115.99652 * 179.97438 * 20 18 8 22 22 H 1.09006 * 109.46878 * 176.07922 * 1 2 3 23 23 H 1.09003 * 109.47078 * 296.07325 * 1 2 3 24 24 H 1.08993 * 109.47447 * 56.07679 * 1 2 3 25 25 H 1.09643 * 109.16216 * 295.50120 * 4 2 1 26 26 H 1.09687 * 109.11532 * 178.52624 * 4 2 1 27 27 H 1.07472 * 111.55593 * 306.75622 * 5 4 2 28 28 H 1.10397 * 107.04845 * 190.57451 * 5 4 2 29 29 H 1.08999 * 109.47341 * 56.04327 * 7 6 5 30 30 H 1.09011 * 109.46915 * 176.04668 * 7 6 5 31 31 H 1.09001 * 109.47056 * 296.04000 * 7 6 5 32 32 H 0.97004 * 120.00249 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.46890 * 359.97438 * 21 20 18 34 34 H 1.08993 * 109.47360 * 119.99624 * 21 20 18 35 35 H 1.09004 * 109.46686 * 240.00400 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5241 0.0000 0.0000 3 1 1.8381 1.0714 0.0000 4 6 2.1014 -0.6248 1.2585 5 6 1.6365 -2.0424 1.5017 6 7 2.2565 -3.0196 0.6029 7 6 2.2486 -4.3567 1.2118 8 6 1.6156 -3.0466 -0.7226 9 1 1.9690 -3.9698 -1.2257 10 6 0.1257 -3.1042 -0.6602 11 1 -0.3743 -3.1217 0.2968 12 6 -0.6124 -3.1341 -1.8244 13 7 -0.0034 -3.1123 -2.9898 14 14 -2.4773 -3.2055 -1.7462 15 1 -3.0252 -1.8255 -1.7275 16 1 -2.9954 -3.9277 -2.9359 17 1 -2.8941 -3.9204 -0.5131 18 6 2.1225 -1.8770 -1.5349 19 8 2.6394 -2.1499 -2.6206 20 7 2.0779 -0.5944 -1.2145 21 6 2.6559 0.3463 -2.2099 22 1 -0.3633 -1.0253 -0.0703 23 1 -0.3633 0.4517 0.9231 24 1 -0.3634 0.5735 -0.8527 25 1 1.8257 -0.0110 2.1242 26 1 3.1962 -0.6214 1.1916 27 1 0.5642 -2.1140 1.4887 28 1 1.9574 -2.3178 2.5215 29 1 1.2266 -4.6306 1.4736 30 1 2.6488 -5.0813 0.5025 31 1 2.8647 -4.3500 2.1110 32 1 -0.5227 -3.1337 -3.8089 33 1 3.0309 -0.2154 -3.0655 34 1 1.8859 1.0428 -2.5414 35 1 3.4752 0.9010 -1.7525 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252219502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:58 Heat of formation + Delta-G solvation = -45.124195 kcal Electronic energy + Delta-G solvation = -17442.623468 eV Core-core repulsion = 14860.983097 eV Total energy + Delta-G solvation = -2581.640371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88057 -37.96783 -36.77892 -34.66826 -32.91034 -30.38711 -29.44284 -27.53040 -26.11791 -25.52700 -23.73151 -21.20113 -19.50486 -18.45093 -17.39755 -17.11281 -16.73444 -15.87084 -15.50964 -15.27291 -14.84879 -14.57032 -14.34734 -13.77838 -13.33085 -13.31711 -13.28543 -13.03114 -12.75492 -12.58284 -12.48289 -12.38770 -12.13669 -11.92785 -11.72666 -11.57475 -11.19878 -10.65255 -10.09782 -9.34177 -9.04663 -8.11528 -6.36216 1.36463 1.37932 1.47830 2.26224 2.37219 2.48471 3.09836 3.46393 3.91912 4.10048 4.32145 4.39305 4.51759 4.59390 4.69344 4.72265 4.84583 4.85303 4.96938 4.99321 5.05325 5.08977 5.12499 5.16905 5.21831 5.44081 5.62804 5.70202 5.85898 5.95522 6.19451 6.49599 6.78898 7.13953 7.32753 7.85624 8.85293 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021990 B = 0.014570 C = 0.012936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.009083 B = 1921.295197 C = 2163.986311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.113 4.113 5 C 0.052 3.948 6 N -0.552 5.552 7 C 0.040 3.960 8 C 0.228 3.772 9 H 0.000 1.000 10 C -0.538 4.538 11 H 0.076 0.924 12 C 0.021 3.979 13 N -0.892 5.892 14 Si 0.951 3.049 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.258 1.258 18 C 0.541 3.459 19 O -0.629 6.629 20 N -0.600 5.600 21 C 0.069 3.931 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.035 0.965 25 H 0.114 0.886 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.260 0.740 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 7.366 10.876 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.044 3.956 3 H 0.114 0.886 4 C -0.151 4.151 5 C -0.076 4.076 6 N -0.277 5.277 7 C -0.108 4.108 8 C 0.117 3.883 9 H 0.018 0.982 10 C -0.576 4.576 11 H 0.094 0.906 12 C -0.182 4.182 13 N -0.527 5.527 14 Si 0.775 3.225 15 H -0.195 1.195 16 H -0.217 1.217 17 H -0.182 1.182 18 C 0.332 3.668 19 O -0.513 6.513 20 N -0.331 5.331 21 C -0.073 4.073 22 H 0.086 0.914 23 H 0.109 0.891 24 H 0.054 0.946 25 H 0.133 0.867 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.314 7.358 10.118 12.579 hybrid contribution -1.763 -0.627 -0.781 2.028 sum -0.450 6.731 9.336 11.519 Atomic orbital electron populations 1.22258 0.95505 1.04149 1.01613 1.20999 0.93797 0.97179 0.83639 0.88643 1.21446 1.00958 0.95414 0.97276 1.21535 0.98049 0.92521 0.95459 1.62418 1.54448 1.07595 1.03278 1.22239 0.99893 0.89499 0.99216 1.19106 0.93207 0.90056 0.85888 0.98242 1.20963 0.90592 1.52946 0.93126 0.90580 1.25858 1.03122 0.94216 0.95024 1.70326 1.36853 1.47630 0.97938 0.85667 0.80223 0.78616 0.77980 1.19500 1.21679 1.18157 1.21551 0.74615 0.84464 0.86154 1.90991 1.48959 1.85142 1.26242 1.47541 1.59386 1.05438 1.20727 1.22103 0.98674 0.92538 0.94033 0.91407 0.89123 0.94558 0.86750 0.91939 0.93779 0.90930 0.95766 0.93598 0.89438 0.93137 0.92338 0.92130 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.96 9.19 71.79 0.66 -5.30 16 2 C 0.15 4.80 2.61 44.51 0.12 4.92 16 3 H 0.10 2.45 7.82 -0.95 -0.01 2.44 16 4 C -0.11 -3.21 5.28 29.63 0.16 -3.06 16 5 C 0.05 1.75 4.55 85.77 0.39 2.14 16 6 N -0.55 -23.11 4.64 -908.80 -4.21 -27.32 16 7 C 0.04 1.44 9.20 127.69 1.17 2.61 16 8 C 0.23 11.94 1.69 43.04 0.07 12.01 16 9 H 0.00 -0.02 7.55 -1.35 -0.01 -0.03 16 10 C -0.54 -28.00 5.27 25.14 0.13 -27.87 16 11 H 0.08 3.75 6.16 -2.91 -0.02 3.73 16 12 C 0.02 1.16 5.31 84.65 0.45 1.61 16 13 N -0.89 -54.46 11.77 21.45 0.25 -54.21 16 14 Si 0.95 42.51 29.54 68.60 2.03 44.53 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 C 0.54 29.09 5.62 88.18 0.50 29.58 16 19 O -0.63 -39.54 14.82 -9.80 -0.15 -39.69 16 20 N -0.60 -25.90 2.84 -817.69 -2.32 -28.23 16 21 C 0.07 2.60 10.14 127.35 1.29 3.89 16 22 H 0.07 2.80 4.15 -2.38 -0.01 2.79 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.11 2.25 8.20 -2.04 -0.02 2.23 16 26 H 0.06 1.85 8.20 -2.02 -0.02 1.83 16 27 H 0.04 1.59 4.94 -3.18 -0.02 1.58 16 28 H 0.07 1.99 7.76 -1.64 -0.01 1.98 16 29 H 0.02 0.87 8.05 -2.39 -0.02 0.85 16 30 H 0.05 1.76 7.75 -2.38 -0.02 1.75 16 31 H 0.09 2.50 8.04 -2.39 -0.02 2.48 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.06 2.63 6.31 -2.39 -0.02 2.61 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.83 269.58 1.63 -71.20 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.09 Total: 13.16 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 4.94 Total: 20.55 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -6.29 Total: -109.75 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.15 Total: -39.69 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -72.83 1.63 -71.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252219502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.078 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds