Wall clock time and date at job start Mon Mar 30 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46821 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46996 * 120.00312 * 8 6 4 11 11 H 1.48495 * 109.46665 * 239.99993 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.34773 * 119.99909 * 275.00159 * 12 2 1 14 14 O 1.21277 * 120.00549 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99847 * 180.02562 * 13 12 2 16 16 H 1.08999 * 110.27355 * 57.91264 * 15 13 12 17 17 C 1.54597 * 110.31010 * 295.71577 * 15 13 12 18 18 C 1.54938 * 102.92039 * 219.12705 * 17 15 13 19 19 N 1.48538 * 103.22979 * 37.41298 * 18 17 15 20 20 C 1.47902 * 105.81874 * 320.79180 * 19 18 17 21 21 H 1.08998 * 109.91608 * 144.67954 * 20 19 18 22 22 C 1.52998 * 110.08221 * 265.88464 * 20 19 18 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 27 27 H 0.97003 * 119.99825 * 95.00368 * 12 2 1 28 28 H 1.08991 * 110.72001 * 337.48165 * 17 15 13 29 29 H 1.09000 * 110.72068 * 100.77217 * 17 15 13 30 30 H 1.09001 * 110.66615 * 278.97698 * 18 17 15 31 31 H 1.08997 * 110.80882 * 155.91407 * 18 17 15 32 32 H 1.00891 * 111.00009 * 200.27929 * 19 18 17 33 33 H 1.09001 * 109.46716 * 177.69136 * 22 20 19 34 34 H 1.09001 * 109.46997 * 297.68693 * 22 20 19 35 35 H 1.09002 * 109.47116 * 57.69144 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 3.1456 -2.2874 -3.6039 10 1 1.1662 -1.5863 -4.8162 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6499 -0.7287 3.5874 16 1 3.6342 -1.1578 3.4000 17 6 1.6541 -1.8312 4.0151 18 6 1.6680 -1.7297 5.5611 19 7 1.7747 -0.2684 5.8049 20 6 2.7093 0.2443 4.7796 21 1 2.4016 1.2404 4.4616 22 6 4.1312 0.2930 5.3423 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1620 -3.4843 27 1 2.2491 -1.6318 1.1525 28 1 0.6581 -1.6241 3.6240 29 1 2.0014 -2.8118 3.6899 30 1 2.5311 -2.2525 5.9732 31 1 0.7435 -2.1236 5.9834 32 1 2.1195 -0.0811 6.7344 33 1 4.8174 0.6329 4.5666 34 1 4.1649 0.9833 6.1852 35 1 4.4242 -0.7025 5.6760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252614996.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:05 Heat of formation + Delta-G solvation = -72.463396 kcal Electronic energy + Delta-G solvation = -16081.902494 eV Core-core repulsion = 13499.076607 eV Total energy + Delta-G solvation = -2582.825888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18692 -38.89001 -36.67149 -34.37306 -32.23427 -31.81738 -30.26644 -27.36396 -26.96031 -23.71210 -22.34007 -21.57171 -20.69289 -19.02640 -17.74484 -17.36612 -17.01215 -16.21863 -15.72876 -15.63713 -14.78550 -14.45884 -14.14689 -13.88400 -13.70499 -13.52525 -13.27030 -13.00605 -12.86118 -12.75044 -12.54610 -12.35244 -12.29061 -12.10552 -11.86311 -11.66777 -11.10667 -10.68430 -10.53368 -9.75439 -9.38938 -8.18355 -6.36386 1.44416 1.44877 1.57458 1.82941 2.34767 2.62099 3.12053 3.29846 3.58669 3.77756 3.96238 4.25840 4.33921 4.41851 4.50508 4.65824 4.70064 4.73427 4.89870 4.98333 5.02864 5.08617 5.15698 5.16275 5.32588 5.42652 5.61078 5.67983 5.88572 5.91384 6.08935 6.52400 6.72178 6.97576 7.31757 7.57233 8.88466 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.048749 B = 0.006041 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.238649 B = 4633.676045 C = 4662.849349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.703 5.703 13 C 0.504 3.496 14 O -0.600 6.600 15 C -0.111 4.111 16 H 0.123 0.877 17 C -0.111 4.111 18 C 0.043 3.957 19 N -0.681 5.681 20 C 0.071 3.929 21 H 0.068 0.932 22 C -0.165 4.165 23 H 0.041 0.959 24 H 0.007 0.993 25 H 0.066 0.934 26 H 0.265 0.735 27 H 0.405 0.595 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.348 0.652 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -8.966 14.169 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.351 5.351 13 C 0.291 3.709 14 O -0.482 6.482 15 C -0.133 4.133 16 H 0.140 0.860 17 C -0.150 4.150 18 C -0.085 4.085 19 N -0.312 5.312 20 C -0.039 4.039 21 H 0.086 0.914 22 C -0.223 4.223 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.240 0.760 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.274 -7.826 13.733 16.374 hybrid contribution 0.916 -0.398 -0.842 1.306 sum 5.190 -8.224 12.891 16.148 Atomic orbital electron populations 1.21886 0.98480 0.99410 0.99333 1.18337 0.91031 0.91865 0.82211 0.98682 1.21576 1.32525 1.13536 0.90718 0.90711 1.25852 0.94852 0.95588 1.02483 1.70072 1.37106 1.24039 1.24585 0.85248 0.78085 0.78497 0.78195 1.18197 1.20404 1.20971 1.46231 1.65175 1.14125 1.09574 1.21167 0.77229 0.86928 0.85580 1.90604 1.53321 1.18709 1.85592 1.22260 1.02021 0.97211 0.91771 0.85952 1.22522 0.97995 0.97899 0.96559 1.23080 1.02482 0.88533 0.94427 1.63186 1.48687 1.12821 1.06522 1.22180 0.92438 0.98560 0.90757 0.91407 1.22364 0.95281 1.03074 1.01622 0.93996 0.97342 0.91537 0.92542 0.76038 0.92785 0.87428 0.91312 0.89071 0.83427 0.92438 0.91112 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.95 9.26 71.98 0.67 -6.29 16 2 C 0.27 14.36 2.56 44.25 0.11 14.47 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 9 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.70 -29.83 5.04 -446.10 -2.25 -32.08 16 13 C 0.50 20.84 6.97 87.66 0.61 21.45 16 14 O -0.60 -31.00 14.90 -3.02 -0.05 -31.05 16 15 C -0.11 -3.14 3.02 -10.66 -0.03 -3.17 16 16 H 0.12 2.81 7.68 -2.39 -0.02 2.79 16 17 C -0.11 -2.57 6.58 31.80 0.21 -2.36 16 18 C 0.04 0.81 7.54 86.65 0.65 1.46 16 19 N -0.68 -16.13 7.39 -480.18 -3.55 -19.67 16 20 C 0.07 1.95 3.62 45.06 0.16 2.12 16 21 H 0.07 2.51 6.42 -2.39 -0.02 2.50 16 22 C -0.16 -3.29 8.95 71.98 0.64 -2.65 16 23 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 26 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 27 H 0.40 14.26 8.54 -92.71 -0.79 13.47 16 28 H 0.05 1.54 7.86 -2.39 -0.02 1.52 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.35 6.38 8.44 -89.70 -0.76 5.63 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.79 285.81 -0.33 -70.13 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.46 Total: 24.71 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 3.70 Total: -2.82 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -5.55 Total: -105.12 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.79 -0.33 -70.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252614996.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.337 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds