Wall clock time and date at job start Mon Mar 30 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47484 * 2 1 4 4 C 1.50700 * 109.46955 * 240.00337 * 2 1 3 5 5 H 1.08008 * 120.00248 * 240.00503 * 4 2 1 6 6 C 1.37875 * 120.00180 * 59.99816 * 4 2 1 7 7 N 1.31515 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46887 * 300.00628 * 8 6 4 11 11 H 1.48496 * 109.47133 * 60.00300 * 8 6 4 12 12 N 1.46497 * 109.47065 * 120.00875 * 2 1 3 13 13 C 1.34776 * 119.99461 * 274.99676 * 12 2 1 14 14 O 1.21283 * 120.00294 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00012 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.27292 * 28.75776 * 15 13 12 17 17 C 1.54601 * 110.31172 * 150.95093 * 15 13 12 18 18 C 1.54931 * 102.92152 * 140.87278 * 17 15 13 19 19 N 1.48535 * 103.23169 * 322.59007 * 18 17 15 20 20 C 1.47902 * 105.81767 * 39.20477 * 19 18 17 21 21 H 1.09004 * 110.08264 * 94.11981 * 20 19 18 22 22 C 1.53004 * 109.91483 * 215.31857 * 20 19 18 23 23 H 1.08993 * 109.47278 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47117 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46671 * 59.99201 * 1 2 3 26 26 H 0.96996 * 120.00241 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00715 * 94.99791 * 12 2 1 28 28 H 1.08998 * 110.72043 * 259.23317 * 17 15 13 29 29 H 1.08998 * 110.72081 * 22.51486 * 17 15 13 30 30 H 1.08998 * 110.66612 * 204.14903 * 18 17 15 31 31 H 1.09008 * 110.80939 * 81.09274 * 18 17 15 32 32 H 1.00898 * 111.00153 * 159.71652 * 19 18 17 33 33 H 1.08998 * 109.46717 * 175.76388 * 22 20 19 34 34 H 1.08992 * 109.47488 * 295.76546 * 22 20 19 35 35 H 1.09003 * 109.47137 * 55.76790 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.8278 -0.4190 -5.2205 10 1 3.8074 -1.1188 -4.0078 11 1 1.8280 -2.5196 -4.0084 12 7 2.0184 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6489 -0.7291 3.5876 16 1 3.3102 -1.5490 3.3071 17 6 3.3850 0.2627 4.5174 18 6 2.9389 -0.1906 5.9302 19 7 1.5183 -0.5757 5.7309 20 6 1.4656 -1.2576 4.4195 21 1 1.5583 -2.3354 4.5540 22 6 0.1468 -0.9321 3.7154 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 2.2491 -1.6319 1.1525 28 1 4.4650 0.1678 4.4049 29 1 3.0641 1.2858 4.3214 30 1 3.0185 0.6318 6.6411 31 1 3.5259 -1.0456 6.2658 32 1 1.2023 -1.1867 6.4691 33 1 0.1473 -1.3759 2.7199 34 1 -0.6835 -1.3374 4.2935 35 1 0.0373 0.1492 3.6310 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252614997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:08 Heat of formation + Delta-G solvation = -44.535396 kcal Electronic energy + Delta-G solvation = -16307.996688 eV Core-core repulsion = 13726.381849 eV Total energy + Delta-G solvation = -2581.614839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86320 -37.30775 -34.69434 -32.39841 -31.14068 -30.56484 -28.60394 -25.53888 -25.22690 -22.29952 -21.13952 -20.02012 -18.95450 -17.09415 -16.79941 -15.69707 -15.18684 -14.74055 -14.34227 -14.09196 -13.51692 -12.89613 -12.55332 -12.33523 -12.21152 -11.84556 -11.67458 -11.48681 -11.21623 -11.01796 -10.91109 -10.72396 -10.68504 -10.52353 -10.29506 -10.20319 -9.03005 -8.89823 -8.53731 -8.50661 -7.84048 -6.10236 -4.19668 3.26120 3.31471 3.32480 3.42976 4.10717 4.20199 4.39530 4.78329 4.80243 5.16849 5.21432 5.23997 5.43688 5.55686 5.64228 5.76144 5.88455 5.95786 6.15587 6.18492 6.39473 6.63444 6.84249 6.87698 7.01507 7.19142 7.33449 7.51563 7.60141 7.72619 7.95471 8.18371 8.72107 8.81652 9.19924 9.48302 10.95601 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052086 B = 0.006421 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.442614 B = 4359.385793 C = 4475.488791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.711 5.711 13 C 0.518 3.482 14 O -0.549 6.549 15 C -0.123 4.123 16 H 0.086 0.914 17 C -0.112 4.112 18 C 0.040 3.960 19 N -0.665 5.665 20 C 0.086 3.914 21 H 0.051 0.949 22 C -0.150 4.150 23 H 0.025 0.975 24 H 0.016 0.984 25 H 0.089 0.911 26 H 0.265 0.735 27 H 0.387 0.613 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.334 0.666 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -6.112 12.789 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.359 5.359 13 C 0.302 3.698 14 O -0.428 6.428 15 C -0.145 4.145 16 H 0.105 0.895 17 C -0.150 4.150 18 C -0.089 4.089 19 N -0.294 5.294 20 C -0.024 4.024 21 H 0.069 0.931 22 C -0.208 4.208 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.219 0.781 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.149 0.851 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.156 -4.475 12.410 13.367 hybrid contribution 0.863 -1.943 -0.715 2.243 sum 3.019 -6.418 11.695 13.678 Atomic orbital electron populations 1.22069 0.98507 0.98988 1.00904 1.18706 0.90998 0.93918 0.80057 0.93487 1.21197 1.32446 1.13187 0.90433 0.92224 1.24888 0.94832 0.94958 0.99024 1.69895 1.35854 1.22403 1.23946 0.86518 0.79142 0.79579 0.81895 1.21126 1.20224 1.20195 1.46580 1.65325 1.13368 1.10586 1.19965 0.78282 0.87348 0.84177 1.90638 1.51216 1.16142 1.84779 1.22291 0.97640 0.99201 0.95363 0.89523 1.22485 0.98960 1.01114 0.92421 1.23006 0.88551 0.99473 0.97839 1.63004 1.19756 1.43345 1.03300 1.21999 0.95402 0.95450 0.89566 0.93055 1.21978 0.95160 1.03980 0.99657 0.95581 0.96528 0.89288 0.92540 0.78139 0.91108 0.88631 0.90047 0.94380 0.85068 0.91482 0.93037 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.23 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.71 -14.84 4.55 -54.93 -0.25 -15.09 16 13 C 0.52 10.39 4.72 -10.99 -0.05 10.34 16 14 O -0.55 -13.29 14.65 5.55 0.08 -13.21 16 15 C -0.12 -1.85 3.38 -90.41 -0.31 -2.16 16 16 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.11 -1.56 6.56 -24.87 -0.16 -1.73 16 18 C 0.04 0.46 7.55 -1.90 -0.01 0.45 16 19 N -0.66 -8.41 7.14 -103.13 -0.74 -9.15 16 20 C 0.09 1.18 3.90 -66.64 -0.26 0.92 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 22 C -0.15 -2.37 8.37 37.16 0.31 -2.06 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.39 7.03 8.54 -40.82 -0.35 6.68 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.62 6.89 -51.93 -0.36 1.26 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.33 3.36 8.92 -39.29 -0.35 3.01 16 33 H 0.07 1.12 7.07 -51.93 -0.37 0.76 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.44 7.04 -51.93 -0.37 1.07 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -30.53 282.12 -7.18 -37.71 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.42 Total: 8.03 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.71 Total: -3.78 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.36 Total: -48.71 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.53 -7.18 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252614997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.828 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds