Wall clock time and date at job start Mon Mar 30 2020 04:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47484 * 2 1 4 4 C 1.50700 * 109.46955 * 240.00337 * 2 1 3 5 5 H 1.08008 * 120.00248 * 240.00503 * 4 2 1 6 6 C 1.37875 * 120.00180 * 59.99816 * 4 2 1 7 7 N 1.31515 * 120.00159 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00318 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47181 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46887 * 300.00628 * 8 6 4 11 11 H 1.48496 * 109.47133 * 60.00300 * 8 6 4 12 12 N 1.46497 * 109.47065 * 120.00875 * 2 1 3 13 13 C 1.34776 * 119.99461 * 274.99676 * 12 2 1 14 14 O 1.21283 * 120.00294 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00012 * 179.97438 * 13 12 2 16 16 H 1.09006 * 110.27292 * 28.75776 * 15 13 12 17 17 C 1.54601 * 110.31172 * 150.95093 * 15 13 12 18 18 C 1.54931 * 102.92152 * 140.87278 * 17 15 13 19 19 N 1.48535 * 103.23169 * 322.59007 * 18 17 15 20 20 C 1.47902 * 105.81767 * 39.20477 * 19 18 17 21 21 H 1.09004 * 110.08264 * 94.11981 * 20 19 18 22 22 C 1.53004 * 109.91483 * 215.31857 * 20 19 18 23 23 H 1.08993 * 109.47278 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47117 * 300.00030 * 1 2 3 25 25 H 1.09004 * 109.46671 * 59.99201 * 1 2 3 26 26 H 0.96996 * 120.00241 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00715 * 94.99791 * 12 2 1 28 28 H 1.08998 * 110.72043 * 259.23317 * 17 15 13 29 29 H 1.08998 * 110.72081 * 22.51486 * 17 15 13 30 30 H 1.08998 * 110.66612 * 204.14903 * 18 17 15 31 31 H 1.09008 * 110.80939 * 81.09274 * 18 17 15 32 32 H 1.00898 * 111.00153 * 159.71652 * 19 18 17 33 33 H 1.08998 * 109.46717 * 175.76388 * 22 20 19 34 34 H 1.08992 * 109.47488 * 295.76546 * 22 20 19 35 35 H 1.09003 * 109.47137 * 55.76790 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.8278 -0.4190 -5.2205 10 1 3.8074 -1.1188 -4.0078 11 1 1.8280 -2.5196 -4.0084 12 7 2.0184 -0.6908 1.1960 13 6 2.1471 -0.0185 2.3570 14 8 1.8583 1.1582 2.4117 15 6 2.6489 -0.7291 3.5876 16 1 3.3102 -1.5490 3.3071 17 6 3.3850 0.2627 4.5174 18 6 2.9389 -0.1906 5.9302 19 7 1.5183 -0.5757 5.7309 20 6 1.4656 -1.2576 4.4195 21 1 1.5583 -2.3354 4.5540 22 6 0.1468 -0.9321 3.7154 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5140 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 2.2491 -1.6319 1.1525 28 1 4.4650 0.1678 4.4049 29 1 3.0641 1.2858 4.3214 30 1 3.0185 0.6318 6.6411 31 1 3.5259 -1.0456 6.2658 32 1 1.2023 -1.1867 6.4691 33 1 0.1473 -1.3759 2.7199 34 1 -0.6835 -1.3374 4.2935 35 1 0.0373 0.1492 3.6310 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252614997.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:08 Heat of formation + Delta-G solvation = -67.897686 kcal Electronic energy + Delta-G solvation = -16309.009753 eV Core-core repulsion = 13726.381849 eV Total energy + Delta-G solvation = -2582.627904 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.29491 -38.67696 -36.61846 -34.32724 -32.34234 -31.86946 -30.37432 -27.33983 -26.71857 -23.91902 -22.16916 -21.78037 -20.53880 -18.60845 -18.12799 -17.33987 -17.05137 -16.16214 -15.97787 -15.38513 -14.97786 -14.45919 -14.21919 -13.95133 -13.48435 -13.36944 -13.07382 -12.96073 -12.85346 -12.76708 -12.61540 -12.25265 -12.23850 -12.13577 -11.83377 -11.67655 -11.11059 -10.66535 -10.50847 -9.69726 -9.43200 -8.16993 -6.35108 1.44714 1.47055 1.54945 1.85857 2.35944 2.65161 3.13037 3.23848 3.64496 3.67694 4.02669 4.23799 4.35573 4.42043 4.53742 4.67196 4.73726 4.76910 4.91003 4.92720 5.01727 5.04978 5.11816 5.26009 5.35674 5.44814 5.62846 5.70418 5.85473 5.93767 6.11139 6.54741 6.73308 7.02086 7.33204 7.61885 8.89121 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052086 B = 0.006421 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.442614 B = 4359.385793 C = 4475.488791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.272 3.728 3 H -0.007 1.007 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.263 1.263 12 N -0.706 5.706 13 C 0.515 3.485 14 O -0.598 6.598 15 C -0.118 4.118 16 H 0.120 0.880 17 C -0.116 4.116 18 C 0.050 3.950 19 N -0.683 5.683 20 C 0.091 3.909 21 H 0.089 0.911 22 C -0.146 4.146 23 H 0.040 0.960 24 H 0.010 0.990 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.352 0.648 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -8.925 13.852 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.168 3.832 3 H 0.011 0.989 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.212 1.212 10 H -0.196 1.196 11 H -0.188 1.188 12 N -0.355 5.355 13 C 0.302 3.698 14 O -0.480 6.480 15 C -0.140 4.140 16 H 0.138 0.862 17 C -0.155 4.155 18 C -0.079 4.079 19 N -0.314 5.314 20 C -0.019 4.019 21 H 0.107 0.893 22 C -0.204 4.204 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.169 0.831 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.388 -7.333 13.513 15.743 hybrid contribution 0.460 -0.996 -1.000 1.484 sum 3.848 -8.329 12.513 15.516 Atomic orbital electron populations 1.21862 0.98397 0.99299 0.99317 1.18281 0.91033 0.91705 0.82136 0.98867 1.21538 1.32617 1.13582 0.90837 0.90794 1.25834 0.94863 0.95580 1.02426 1.70058 1.37047 1.23981 1.24652 0.85375 0.78627 0.78711 0.77477 1.21244 1.19559 1.18758 1.46330 1.65404 1.14022 1.09706 1.20902 0.76877 0.86867 0.85148 1.90620 1.53064 1.18692 1.85612 1.22376 0.98929 0.99862 0.92794 0.86164 1.22515 1.00130 0.98694 0.94134 1.23000 0.88018 1.00870 0.95999 1.62888 1.20974 1.44182 1.03393 1.21978 0.93004 0.97397 0.89524 0.89330 1.21909 0.97802 1.00936 0.99783 0.94088 0.97131 0.91773 0.92576 0.76179 0.88994 0.92599 0.89412 0.91099 0.83051 0.92836 0.91032 0.94944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 14.38 2.56 44.25 0.11 14.49 16 3 H -0.01 -0.42 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 8 Si 0.97 42.13 29.54 68.60 2.03 44.16 16 9 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 N -0.71 -29.56 4.55 -446.10 -2.03 -31.59 16 13 C 0.51 20.89 4.72 87.66 0.41 21.30 16 14 O -0.60 -30.50 14.65 -3.04 -0.04 -30.54 16 15 C -0.12 -3.30 3.38 -10.66 -0.04 -3.34 16 16 H 0.12 2.59 8.14 -2.38 -0.02 2.58 16 17 C -0.12 -3.06 6.56 31.80 0.21 -2.86 16 18 C 0.05 0.97 7.55 86.65 0.65 1.62 16 19 N -0.68 -15.33 7.14 -480.19 -3.43 -18.76 16 20 C 0.09 2.23 3.90 45.06 0.18 2.41 16 21 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 22 C -0.15 -4.51 8.37 71.98 0.60 -3.91 16 23 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 3.65 6.07 -2.38 -0.01 3.63 16 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.40 14.07 8.54 -92.71 -0.79 13.28 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.93 6.89 -2.39 -0.02 1.92 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.35 5.74 8.92 -89.70 -0.80 4.94 16 33 H 0.05 1.76 7.07 -2.39 -0.02 1.74 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.03 1.26 7.04 -2.39 -0.02 1.24 16 Total: -1.00 -69.62 282.12 -0.26 -69.89 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.50 Total: 24.36 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 3.47 Total: -4.21 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -5.22 Total: -103.65 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.04 Total: -30.54 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.62 -0.26 -69.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252614997.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.990 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds