Wall clock time and date at job start Mon Mar 30 2020 02:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.47054 * 125.40926 * 90.00269 * 4 3 2 6 6 C 1.54095 * 103.86326 * 179.97438 * 5 4 3 7 7 N 1.47056 * 103.86508 * 359.97438 * 6 5 4 8 8 C 1.46499 * 125.41455 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46969 * 90.00058 * 8 7 6 10 10 C 1.50701 * 109.46747 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00287 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00241 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99852 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46961 * 120.00370 * 14 12 10 17 17 H 1.48500 * 109.47286 * 240.00752 * 14 12 10 18 18 C 1.33945 * 125.41146 * 269.69383 * 4 3 2 19 19 O 1.21586 * 123.04050 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 21 21 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 23 23 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 24 24 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 25 25 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 26 26 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 27 27 H 1.09005 * 110.54760 * 298.59562 * 5 4 3 28 28 H 1.09003 * 110.54879 * 61.25470 * 5 4 3 29 29 H 1.08996 * 110.55294 * 118.59619 * 6 5 4 30 30 H 1.09004 * 110.54826 * 241.40928 * 6 5 4 31 31 H 1.08996 * 109.47169 * 210.00134 * 8 7 6 32 32 H 1.09004 * 109.46914 * 330.00417 * 8 7 6 33 33 H 1.08996 * 109.47238 * 300.00034 * 9 8 7 34 34 H 1.09000 * 109.46943 * 59.99903 * 9 8 7 35 35 H 0.97001 * 119.99938 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3576 1.4423 -1.1976 6 6 5.7906 1.4429 -0.6310 7 7 5.5935 1.4441 0.8262 8 6 6.6628 1.4455 1.8276 9 6 7.0342 2.8886 2.1750 10 6 8.1346 2.8901 3.2046 11 1 8.5299 1.9553 3.5739 12 6 8.6375 4.0849 3.6743 13 7 8.1565 5.2232 3.2242 14 14 10.0010 4.0868 4.9511 15 1 10.3632 2.6872 5.2907 16 1 11.1908 4.7866 4.4035 17 1 9.5334 4.7881 6.1737 18 6 4.2807 1.4484 1.0926 19 8 3.8337 1.4551 2.2233 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 4.1813 0.5460 -1.7924 28 1 4.1795 2.3371 -1.7940 29 1 6.3264 0.5469 -0.9443 30 1 6.3257 2.3392 -0.9450 31 1 6.3200 0.9322 2.7260 32 1 7.5367 0.9319 1.4267 33 1 7.3769 3.4019 1.2766 34 1 6.1603 3.4022 2.5758 35 1 8.5101 6.0637 3.5550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:48 Heat of formation + Delta-G solvation = -27.714819 kcal Electronic energy + Delta-G solvation = -15752.644015 eV Core-core repulsion = 13171.758571 eV Total energy + Delta-G solvation = -2580.885444 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.58419 -35.88550 -35.72075 -33.74793 -32.41223 -30.03462 -28.35299 -26.36040 -24.68080 -22.66767 -21.89952 -20.87564 -19.09154 -16.76943 -16.40568 -15.95518 -15.71396 -14.90935 -14.45607 -13.97903 -13.75769 -13.59480 -13.22715 -12.65804 -12.55737 -12.15336 -12.10282 -11.97406 -11.68894 -11.34667 -11.21240 -10.92859 -10.75216 -10.62964 -9.94733 -9.82376 -9.55399 -9.13802 -8.58849 -8.33859 -7.81658 -5.98768 -4.02023 2.83992 3.33224 3.40487 3.44718 3.67186 4.15800 4.49438 4.66441 4.82446 4.89699 5.12853 5.20754 5.22899 5.37472 5.41756 5.60979 5.61685 5.72527 5.84499 5.90705 5.94680 6.09425 6.20201 6.50643 6.58173 6.87130 7.08130 7.27090 7.69140 7.79507 8.03314 8.13798 8.38909 9.03277 9.12336 9.61807 11.12807 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051705 B = 0.005333 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.399570 B = 5248.955269 C = 5438.668034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.153 3.847 4 N -0.643 5.643 5 C 0.097 3.903 6 C 0.093 3.907 7 N -0.626 5.626 8 C 0.152 3.848 9 C 0.009 3.991 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.695 3.305 19 O -0.585 6.585 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.016 0.984 34 H 0.022 0.978 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -8.842 -12.050 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.031 3.969 4 N -0.382 5.382 5 C -0.027 4.027 6 C -0.032 4.032 7 N -0.363 5.363 8 C 0.032 3.968 9 C -0.029 4.029 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.397 3.603 19 O -0.463 6.463 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.289 -8.654 -11.324 17.578 hybrid contribution 0.837 0.199 0.474 0.982 sum -9.452 -8.455 -10.850 16.690 Atomic orbital electron populations 1.21685 0.95234 1.01778 1.01909 1.21950 0.95898 0.97739 1.02544 1.21160 0.76444 0.96481 1.02827 1.47220 1.05521 1.79441 1.06047 1.22288 0.89300 1.02129 0.88999 1.22275 0.95985 1.02862 0.82031 1.47571 1.05452 1.76980 1.06339 1.21652 0.85423 1.01310 0.88413 1.19447 0.96813 0.89969 0.96655 1.21134 1.18942 0.92552 1.23291 0.92382 1.25007 0.97033 0.95573 0.96703 1.69993 1.42424 0.97272 1.43540 0.86494 0.81710 0.78130 0.81408 1.19641 1.21036 1.20968 1.15923 0.81973 0.77957 0.84442 1.90896 1.76122 1.58268 1.20987 0.92735 0.92620 0.92386 0.92111 0.91427 0.89986 0.90791 0.90844 0.90605 0.90634 0.90096 0.91031 0.91587 0.96559 0.95980 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.14 -1.55 6.26 -26.73 -0.17 -1.72 16 3 C 0.15 1.91 6.00 -4.04 -0.02 1.89 16 4 N -0.64 -9.91 2.96 -178.81 -0.53 -10.44 16 5 C 0.10 1.12 7.68 -3.17 -0.02 1.09 16 6 C 0.09 1.28 7.68 -3.17 -0.02 1.26 16 7 N -0.63 -12.21 2.96 -178.82 -0.53 -12.74 16 8 C 0.15 3.36 5.93 -4.04 -0.02 3.33 16 9 C 0.01 0.25 5.30 -27.88 -0.15 0.10 16 10 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 11 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 14 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.70 14.29 8.29 -88.40 -0.73 13.55 16 19 O -0.58 -14.57 17.02 5.29 0.09 -14.48 16 20 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.67 7.92 -51.93 -0.41 1.26 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -35.13 296.43 -7.83 -42.96 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -5.86 Total: -4.82 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.19 Total: 4.86 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.32 Total: -49.94 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.09 Total: -14.48 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.13 -7.83 -42.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.241 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds