Wall clock time and date at job start Mon Mar 30 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 N 1.46506 * 109.46992 * 179.97438 * 3 2 1 5 5 C 1.47054 * 125.40926 * 90.00269 * 4 3 2 6 6 C 1.54095 * 103.86326 * 179.97438 * 5 4 3 7 7 N 1.47056 * 103.86508 * 359.97438 * 6 5 4 8 8 C 1.46499 * 125.41455 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46969 * 90.00058 * 8 7 6 10 10 C 1.50701 * 109.46747 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00287 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99518 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00241 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99852 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47181 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46961 * 120.00370 * 14 12 10 17 17 H 1.48500 * 109.47286 * 240.00752 * 14 12 10 18 18 C 1.33945 * 125.41146 * 269.69383 * 4 3 2 19 19 O 1.21586 * 123.04050 * 359.97438 * 18 4 3 20 20 H 1.09000 * 109.46839 * 60.00324 * 1 2 3 21 21 H 1.08999 * 109.47114 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47037 * 300.00424 * 1 2 3 23 23 H 1.09000 * 109.47531 * 239.99583 * 2 1 3 24 24 H 1.09008 * 109.47250 * 120.00157 * 2 1 3 25 25 H 1.09000 * 109.46884 * 60.00289 * 3 2 1 26 26 H 1.09000 * 109.46955 * 299.99604 * 3 2 1 27 27 H 1.09005 * 110.54760 * 298.59562 * 5 4 3 28 28 H 1.09003 * 110.54879 * 61.25470 * 5 4 3 29 29 H 1.08996 * 110.55294 * 118.59619 * 6 5 4 30 30 H 1.09004 * 110.54826 * 241.40928 * 6 5 4 31 31 H 1.08996 * 109.47169 * 210.00134 * 8 7 6 32 32 H 1.09004 * 109.46914 * 330.00417 * 8 7 6 33 33 H 1.08996 * 109.47238 * 300.00034 * 9 8 7 34 34 H 1.09000 * 109.46943 * 59.99903 * 9 8 7 35 35 H 0.97001 * 119.99938 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3576 1.4423 -1.1976 6 6 5.7906 1.4429 -0.6310 7 7 5.5935 1.4441 0.8262 8 6 6.6628 1.4455 1.8276 9 6 7.0342 2.8886 2.1750 10 6 8.1346 2.8901 3.2046 11 1 8.5299 1.9553 3.5739 12 6 8.6375 4.0849 3.6743 13 7 8.1565 5.2232 3.2242 14 14 10.0010 4.0868 4.9511 15 1 10.3632 2.6872 5.2907 16 1 11.1908 4.7866 4.4035 17 1 9.5334 4.7881 6.1737 18 6 4.2807 1.4484 1.0926 19 8 3.8337 1.4551 2.2233 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 4.1813 0.5460 -1.7924 28 1 4.1795 2.3371 -1.7940 29 1 6.3264 0.5469 -0.9443 30 1 6.3257 2.3392 -0.9450 31 1 6.3200 0.9322 2.7260 32 1 7.5367 0.9319 1.4267 33 1 7.3769 3.4019 1.2766 34 1 6.1603 3.4022 2.5758 35 1 8.5101 6.0637 3.5550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259732321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:47 Heat of formation + Delta-G solvation = -51.096481 kcal Electronic energy + Delta-G solvation = -15753.657920 eV Core-core repulsion = 13171.758571 eV Total energy + Delta-G solvation = -2581.899349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.97119 -37.38351 -37.11102 -35.48547 -34.01910 -31.68189 -29.75410 -27.64609 -26.40468 -23.95267 -23.30531 -22.28374 -20.56986 -18.72762 -17.79865 -17.40742 -17.09640 -16.49115 -16.04551 -15.32644 -15.09300 -14.73158 -14.60160 -14.42764 -14.25590 -13.54679 -13.35633 -13.06597 -12.88682 -12.80197 -12.63875 -12.48716 -12.18228 -11.95729 -11.81952 -11.63263 -11.40841 -11.16011 -10.60501 -10.03133 -9.21787 -8.23268 -6.36361 1.39302 1.41473 1.52181 1.56112 2.13249 2.40126 2.93626 3.10328 3.61579 3.82892 4.03582 4.16160 4.21376 4.38540 4.49933 4.58721 4.63231 4.66102 4.71419 4.86219 4.92694 5.01815 5.06414 5.16747 5.28819 5.37987 5.39409 5.59521 5.67428 5.84926 5.91835 6.18417 6.69762 6.79903 7.33439 7.57113 8.89418 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051705 B = 0.005333 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.399570 B = 5248.955269 C = 5438.668034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.637 5.637 5 C 0.099 3.901 6 C 0.084 3.916 7 N -0.638 5.638 8 C 0.168 3.832 9 C 0.022 3.978 10 C -0.544 4.544 11 H 0.069 0.931 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.973 3.027 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.282 1.282 18 C 0.679 3.321 19 O -0.646 6.646 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.047 0.953 23 H 0.080 0.920 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.001 0.999 34 H -0.031 1.031 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 -9.991 -14.015 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.025 3.975 4 N -0.375 5.375 5 C -0.023 4.023 6 C -0.038 4.038 7 N -0.374 5.374 8 C 0.046 3.954 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.087 0.913 12 C -0.199 4.199 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.208 1.208 18 C 0.380 3.620 19 O -0.528 6.528 20 H 0.095 0.905 21 H 0.083 0.917 22 H 0.066 0.934 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.019 0.981 34 H -0.012 1.012 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.844 -9.821 -13.375 19.294 hybrid contribution 0.639 0.586 1.016 1.336 sum -9.205 -9.235 -12.359 17.966 Atomic orbital electron populations 1.21664 0.93374 1.02631 1.02501 1.21865 0.97434 0.96212 1.01758 1.21447 0.74878 0.97855 1.03339 1.47392 1.06545 1.77751 1.05826 1.22635 0.86626 1.05372 0.87625 1.22686 0.98275 1.04439 0.78397 1.47529 1.04653 1.76657 1.08541 1.21206 0.87261 0.97739 0.89178 1.19256 0.94340 0.92585 0.95468 1.21588 1.19424 0.93269 1.23906 0.91306 1.26052 0.99820 0.95004 0.99001 1.70136 1.44101 0.98125 1.45116 0.85282 0.78183 0.78873 0.77985 1.18112 1.19784 1.20830 1.16382 0.82761 0.77957 0.84879 1.90831 1.77249 1.60937 1.23828 0.90531 0.91658 0.93417 0.90094 0.94889 0.92881 0.86782 0.86744 0.88135 0.87411 0.90191 0.93082 0.88502 0.98067 1.01241 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.13 -2.73 6.26 30.59 0.19 -2.54 16 3 C 0.15 3.47 6.00 86.38 0.52 3.99 16 4 N -0.64 -18.89 2.96 -838.37 -2.48 -21.37 16 5 C 0.10 1.94 7.68 86.64 0.67 2.61 16 6 C 0.08 2.14 7.68 86.64 0.67 2.80 16 7 N -0.64 -24.96 2.96 -838.37 -2.48 -27.43 16 8 C 0.17 7.57 5.93 86.38 0.51 8.08 16 9 C 0.02 1.23 5.30 29.85 0.16 1.39 16 10 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 11 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 12 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 13 N -0.93 -58.97 13.29 21.45 0.28 -58.68 16 14 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 C 0.68 28.60 8.29 179.57 1.49 30.09 16 19 O -0.65 -34.20 17.02 -3.99 -0.07 -34.27 16 20 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 25 H 0.05 1.57 7.91 -2.39 -0.02 1.55 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.48 7.92 -2.39 -0.02 2.46 16 32 H 0.10 3.73 8.14 -2.39 -0.02 3.72 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H -0.03 -2.04 8.14 -2.39 -0.02 -2.06 16 35 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.43 296.43 3.93 -77.49 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.04 Total: 3.42 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.61 Total: 13.57 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -4.67 Total: -107.48 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.07 Total: -34.27 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -81.43 3.93 -77.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.397 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds