Wall clock time and date at job start Mon Mar 30 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46862 * 2 1 4 4 O 1.21274 * 120.00370 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.47083 * 120.88112 * 359.71669 * 5 3 2 7 7 C 1.53694 * 108.27737 * 128.75662 * 6 5 3 8 8 N 1.46907 * 109.25391 * 54.08412 * 7 6 5 9 9 C 1.46900 * 110.99671 * 172.61085 * 8 7 6 10 10 C 1.46903 * 111.26797 * 296.75665 * 8 7 6 11 11 H 1.09003 * 109.49325 * 303.14367 * 10 8 7 12 12 C 1.50705 * 109.49066 * 183.06667 * 10 8 7 13 13 H 1.07997 * 119.99567 * 324.92474 * 12 10 8 14 14 C 1.37879 * 119.99898 * 144.92601 * 12 10 8 15 15 N 1.31519 * 120.00024 * 5.20065 * 14 12 10 16 16 Si 1.86800 * 119.99963 * 185.20121 * 14 12 10 17 17 H 1.48501 * 109.46830 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47122 * 120.00154 * 16 14 12 19 19 H 1.48501 * 109.46818 * 240.00303 * 16 14 12 20 20 C 1.47081 * 120.88106 * 179.97438 * 5 3 2 21 21 H 1.08996 * 109.47637 * 59.99827 * 1 2 3 22 22 H 1.09004 * 109.47062 * 300.00342 * 1 2 3 23 23 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47389 * 119.99681 * 2 1 3 25 25 H 1.08999 * 109.47207 * 240.00559 * 2 1 3 26 26 H 1.08996 * 109.62786 * 248.52506 * 6 5 3 27 27 H 1.08997 * 109.62872 * 9.11091 * 6 5 3 28 28 H 1.09000 * 109.64905 * 294.08074 * 7 6 5 29 29 H 1.08994 * 109.44645 * 173.96069 * 7 6 5 30 30 H 1.09005 * 109.47248 * 189.83279 * 9 8 7 31 31 H 1.08997 * 109.47218 * 309.82768 * 9 8 7 32 32 H 1.09000 * 109.47605 * 69.83206 * 9 8 7 33 33 H 0.96993 * 119.99806 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.62728 * 350.89213 * 20 5 3 35 35 H 1.09004 * 109.62636 * 111.47498 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3302 0.5641 0.0051 7 6 5.3348 0.8016 -1.1336 8 7 5.9169 2.1431 -0.9941 9 6 7.0080 2.3461 -1.9565 10 6 4.8916 3.1860 -1.1330 11 1 4.3881 3.0754 -2.0935 12 6 5.5418 4.5435 -1.0588 13 1 6.3898 4.7012 -0.4090 14 6 5.0539 5.5841 -1.8205 15 7 3.9606 5.4212 -2.5332 16 14 5.9457 7.2254 -1.8401 17 1 7.1396 7.1505 -0.9602 18 1 6.3714 7.5408 -3.2273 19 1 5.0345 8.2897 -1.3477 20 6 3.8688 3.0462 -0.0011 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 4.8538 0.5426 0.9609 27 1 3.8123 -0.3818 -0.1532 28 1 4.8252 0.7242 -2.0940 29 1 6.1265 0.0543 -1.0807 30 1 7.5340 3.2711 -1.7198 31 1 7.7030 1.5084 -1.8999 32 1 6.5968 2.4096 -2.9640 33 1 3.6176 6.1531 -3.0693 34 1 3.0457 3.7419 -0.1635 35 1 4.3489 3.2590 0.9541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259833497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:21 Heat of formation + Delta-G solvation = -32.716823 kcal Electronic energy + Delta-G solvation = -16496.977214 eV Core-core repulsion = 13915.874867 eV Total energy + Delta-G solvation = -2581.102347 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.49457 -37.28828 -33.98443 -32.81734 -32.44799 -30.01986 -27.83364 -25.56842 -24.27501 -22.74655 -22.30625 -19.79511 -18.13169 -16.83163 -16.28914 -15.31813 -15.19341 -14.79937 -14.15448 -13.70569 -13.58403 -13.43991 -13.15627 -12.29983 -12.22062 -11.95804 -11.78476 -11.35156 -11.24394 -11.04917 -10.97005 -10.83403 -10.71657 -10.50315 -10.08240 -9.78602 -9.39777 -9.00145 -8.63296 -7.93122 -7.19047 -6.10992 -4.17237 3.21811 3.26456 3.34973 3.38974 3.67818 4.35643 4.88465 4.94115 5.22477 5.26129 5.29584 5.44630 5.61238 5.68150 5.74064 5.90125 6.04630 6.10543 6.16218 6.31294 6.38184 6.49919 6.59234 6.77921 6.90520 7.09205 7.16338 7.54404 7.78477 7.87314 8.08680 8.21377 8.50397 8.82545 8.98302 9.49810 10.96802 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.008877 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.679443 B = 3153.405375 C = 3837.165049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C 0.503 3.497 4 O -0.547 6.547 5 N -0.613 5.613 6 C 0.115 3.885 7 C 0.039 3.961 8 N -0.546 5.546 9 C 0.050 3.950 10 C 0.197 3.803 11 H 0.033 0.967 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.065 3.935 15 N -0.883 5.883 16 Si 0.897 3.103 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.129 3.871 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -11.444 3.122 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.291 3.709 4 O -0.425 6.425 5 N -0.346 5.346 6 C -0.009 4.009 7 C -0.091 4.091 8 N -0.271 5.271 9 C -0.098 4.098 10 C 0.090 3.910 11 H 0.051 0.949 12 C -0.550 4.550 13 H 0.084 0.916 14 C -0.139 4.139 15 N -0.520 5.520 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.008 3.992 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.077 -10.805 3.464 11.347 hybrid contribution 0.188 0.763 -0.958 1.239 sum 0.111 -10.042 2.506 10.351 Atomic orbital electron populations 1.21507 0.93537 1.00842 1.03329 1.21642 0.98192 0.95052 1.03477 1.20652 0.82312 0.91308 0.76668 1.90673 1.54827 1.46573 1.50394 1.48617 1.04876 1.09062 1.72030 1.21829 0.90394 0.89257 0.99407 1.22471 0.96539 0.93672 0.96377 1.62172 1.12692 1.01204 1.51070 1.22013 0.93676 1.00852 0.93293 1.19721 0.87702 0.89430 0.94127 0.94922 1.20955 1.15517 0.93162 1.25364 0.91645 1.25070 0.94717 0.99238 0.94894 1.69985 1.20450 1.32629 1.28961 0.86456 0.79860 0.83425 0.77821 1.19473 1.20960 1.20891 1.22237 0.97766 0.79478 0.99755 0.92045 0.92163 0.92639 0.89548 0.89502 0.91222 0.90646 0.95601 0.91219 0.90628 0.94261 0.96766 0.92665 0.89223 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.20 37.16 0.34 -1.41 16 2 C -0.14 -1.95 4.78 -27.88 -0.13 -2.09 16 3 C 0.50 9.86 7.71 -10.98 -0.08 9.77 16 4 O -0.55 -13.10 15.43 5.56 0.09 -13.01 16 5 N -0.61 -12.20 3.00 -172.21 -0.52 -12.72 16 6 C 0.12 1.79 6.53 -3.36 -0.02 1.77 16 7 C 0.04 0.67 5.63 -3.46 -0.02 0.65 16 8 N -0.55 -11.54 4.72 -235.70 -1.11 -12.65 16 9 C 0.05 0.99 9.12 60.06 0.55 1.54 16 10 C 0.20 4.92 2.06 -68.76 -0.14 4.78 16 11 H 0.03 0.95 7.38 -51.93 -0.38 0.57 16 12 C -0.51 -13.73 6.92 -34.44 -0.24 -13.97 16 13 H 0.07 1.76 7.69 -52.49 -0.40 1.36 16 14 C 0.06 1.78 5.45 -17.82 -0.10 1.69 16 15 N -0.88 -25.80 12.84 55.43 0.71 -25.09 16 16 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.13 3.09 5.86 -3.62 -0.02 3.07 16 21 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 22 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 0.96 7.99 -51.93 -0.41 0.55 16 25 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 0.90 6.02 -51.93 -0.31 0.59 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 30 H 0.08 1.58 7.05 -51.93 -0.37 1.21 16 31 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 32 H 0.01 0.29 8.13 -51.93 -0.42 -0.13 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.09 2.47 7.06 -51.93 -0.37 2.10 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 282.17 15.07 4.25 4.25 Total: -1.00 -31.43 282.17 -7.03 -38.46 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.56 Total: -1.14 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 0.13 Total: 5.80 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.92 Total: -50.47 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.09 Total: -13.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.43 -7.03 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.747 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds