Wall clock time and date at job start Mon Mar 30 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46862 * 2 1 4 4 O 1.21274 * 120.00370 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.47083 * 120.88112 * 359.71669 * 5 3 2 7 7 C 1.53694 * 108.27737 * 128.75662 * 6 5 3 8 8 N 1.46907 * 109.25391 * 54.08412 * 7 6 5 9 9 C 1.46900 * 110.99671 * 172.61085 * 8 7 6 10 10 C 1.46903 * 111.26797 * 296.75665 * 8 7 6 11 11 H 1.09003 * 109.49325 * 303.14367 * 10 8 7 12 12 C 1.50705 * 109.49066 * 183.06667 * 10 8 7 13 13 H 1.07997 * 119.99567 * 324.92474 * 12 10 8 14 14 C 1.37879 * 119.99898 * 144.92601 * 12 10 8 15 15 N 1.31519 * 120.00024 * 5.20065 * 14 12 10 16 16 Si 1.86800 * 119.99963 * 185.20121 * 14 12 10 17 17 H 1.48501 * 109.46830 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47122 * 120.00154 * 16 14 12 19 19 H 1.48501 * 109.46818 * 240.00303 * 16 14 12 20 20 C 1.47081 * 120.88106 * 179.97438 * 5 3 2 21 21 H 1.08996 * 109.47637 * 59.99827 * 1 2 3 22 22 H 1.09004 * 109.47062 * 300.00342 * 1 2 3 23 23 H 1.08996 * 109.46916 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47389 * 119.99681 * 2 1 3 25 25 H 1.08999 * 109.47207 * 240.00559 * 2 1 3 26 26 H 1.08996 * 109.62786 * 248.52506 * 6 5 3 27 27 H 1.08997 * 109.62872 * 9.11091 * 6 5 3 28 28 H 1.09000 * 109.64905 * 294.08074 * 7 6 5 29 29 H 1.08994 * 109.44645 * 173.96069 * 7 6 5 30 30 H 1.09005 * 109.47248 * 189.83279 * 9 8 7 31 31 H 1.08997 * 109.47218 * 309.82768 * 9 8 7 32 32 H 1.09000 * 109.47605 * 69.83206 * 9 8 7 33 33 H 0.96993 * 119.99806 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.62728 * 350.89213 * 20 5 3 35 35 H 1.09004 * 109.62636 * 111.47498 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3573 1.6672 -0.0005 6 6 4.3302 0.5641 0.0051 7 6 5.3348 0.8016 -1.1336 8 7 5.9169 2.1431 -0.9941 9 6 7.0080 2.3461 -1.9565 10 6 4.8916 3.1860 -1.1330 11 1 4.3881 3.0754 -2.0935 12 6 5.5418 4.5435 -1.0588 13 1 6.3898 4.7012 -0.4090 14 6 5.0539 5.5841 -1.8205 15 7 3.9606 5.4212 -2.5332 16 14 5.9457 7.2254 -1.8401 17 1 7.1396 7.1505 -0.9602 18 1 6.3714 7.5408 -3.2273 19 1 5.0345 8.2897 -1.3477 20 6 3.8688 3.0462 -0.0011 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 4.8538 0.5426 0.9609 27 1 3.8123 -0.3818 -0.1532 28 1 4.8252 0.7242 -2.0940 29 1 6.1265 0.0543 -1.0807 30 1 7.5340 3.2711 -1.7198 31 1 7.7030 1.5084 -1.8999 32 1 6.5968 2.4096 -2.9640 33 1 3.6176 6.1531 -3.0693 34 1 3.0457 3.7419 -0.1635 35 1 4.3489 3.2590 0.9541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259833497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:21 Heat of formation + Delta-G solvation = -56.036555 kcal Electronic energy + Delta-G solvation = -16497.988433 eV Core-core repulsion = 13915.874867 eV Total energy + Delta-G solvation = -2582.113566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.07098 -38.95119 -35.67628 -34.73682 -33.70563 -31.75334 -29.41836 -27.46775 -25.75246 -24.25114 -23.89965 -21.48528 -19.67183 -18.63947 -18.03463 -16.94627 -16.68566 -16.52047 -15.77334 -15.47007 -15.19689 -14.82884 -14.74419 -14.00785 -13.76791 -13.36461 -13.13986 -12.92281 -12.81138 -12.64514 -12.53441 -12.45016 -12.13626 -12.02442 -11.93660 -11.65849 -11.27177 -10.80921 -10.59442 -9.60782 -8.94679 -8.22396 -6.35308 1.37498 1.39479 1.52531 1.72163 2.17004 2.37741 3.06974 3.40305 3.65471 4.12536 4.19093 4.26803 4.31529 4.40577 4.55399 4.62240 4.65537 4.81499 4.83408 4.91919 4.98614 5.03229 5.06704 5.14442 5.33105 5.34431 5.42688 5.54024 5.65863 6.05678 6.24368 6.61772 6.70359 6.87689 7.29850 7.36261 8.85759 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.008877 C = 0.007295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.679443 B = 3153.405375 C = 3837.165049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.489 3.511 4 O -0.605 6.605 5 N -0.619 5.619 6 C 0.112 3.888 7 C 0.034 3.966 8 N -0.550 5.550 9 C 0.053 3.947 10 C 0.208 3.792 11 H -0.017 1.017 12 C -0.517 4.517 13 H 0.064 0.936 14 C 0.010 3.990 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.257 1.257 18 H -0.278 1.278 19 H -0.284 1.284 20 C 0.142 3.858 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.126 0.874 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.011 0.989 29 H 0.114 0.886 30 H 0.057 0.943 31 H 0.084 0.916 32 H -0.007 1.007 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -14.196 4.040 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.170 4.170 3 C 0.279 3.721 4 O -0.487 6.487 5 N -0.351 5.351 6 C -0.009 4.009 7 C -0.095 4.095 8 N -0.275 5.275 9 C -0.095 4.095 10 C 0.100 3.900 11 H 0.001 0.999 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.181 1.181 18 H -0.204 1.204 19 H -0.210 1.210 20 C 0.018 3.982 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.115 0.885 24 H 0.144 0.856 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.143 0.857 28 H 0.029 0.971 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.012 0.988 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.365 -13.612 4.393 14.368 hybrid contribution -0.235 1.528 -1.228 1.975 sum 1.131 -12.084 3.165 12.542 Atomic orbital electron populations 1.21533 0.93358 1.02825 1.01462 1.21727 0.98246 0.90491 1.06508 1.21934 0.81561 0.93613 0.74962 1.90646 1.56208 1.49040 1.52778 1.48704 1.06210 1.08358 1.71808 1.22219 0.89628 0.89483 0.99590 1.22704 0.98206 0.92119 0.96430 1.62090 1.11849 1.02250 1.51319 1.22024 0.93744 1.01991 0.91745 1.19381 0.88424 0.90376 0.91851 0.99941 1.21247 1.15121 0.94380 1.24863 0.91755 1.25923 0.95318 1.03028 0.94677 1.70142 1.22330 1.33682 1.30352 0.85408 0.78852 0.78741 0.78101 1.18108 1.20404 1.21004 1.21630 0.95790 0.81689 0.99083 0.94525 0.93630 0.88527 0.85564 0.86783 0.89491 0.85684 0.97051 0.86784 0.92384 0.89792 0.98847 0.92904 0.94250 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.20 71.98 0.66 -2.53 16 2 C -0.13 -3.08 4.78 29.85 0.14 -2.94 16 3 C 0.49 18.96 7.71 87.66 0.68 19.64 16 4 O -0.60 -30.32 15.43 -3.01 -0.05 -30.37 16 5 N -0.62 -24.25 3.00 -817.14 -2.45 -26.70 16 6 C 0.11 3.07 6.53 86.50 0.57 3.64 16 7 C 0.03 1.07 5.63 86.54 0.49 1.55 16 8 N -0.55 -22.68 4.72 -899.63 -4.25 -26.93 16 9 C 0.05 2.04 9.12 127.69 1.16 3.21 16 10 C 0.21 10.73 2.06 44.23 0.09 10.82 16 11 H -0.02 -1.06 7.38 -2.39 -0.02 -1.07 16 12 C -0.52 -28.67 6.92 25.60 0.18 -28.49 16 13 H 0.06 3.51 7.69 -2.91 -0.02 3.49 16 14 C 0.01 0.58 5.45 84.65 0.46 1.04 16 15 N -0.93 -56.97 12.84 21.45 0.28 -56.69 16 16 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.14 7.06 5.86 86.33 0.51 7.56 16 21 H 0.04 1.03 8.10 -2.39 -0.02 1.01 16 22 H 0.04 1.20 8.10 -2.38 -0.02 1.18 16 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.13 2.06 7.99 -2.39 -0.02 2.05 16 25 H 0.11 2.16 7.67 -2.39 -0.02 2.14 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.13 2.22 6.02 -2.39 -0.01 2.20 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 2.62 7.99 -2.39 -0.02 2.60 16 30 H 0.06 2.40 7.05 -2.38 -0.02 2.38 16 31 H 0.08 2.46 7.97 -2.39 -0.02 2.44 16 32 H -0.01 -0.31 8.13 -2.39 -0.02 -0.32 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.55 16 34 H 0.04 2.33 7.06 -2.39 -0.02 2.31 16 35 H 0.05 2.61 8.14 -2.38 -0.02 2.59 16 Total: -1.00 -75.35 282.17 1.54 -73.82 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.05 Total: 6.88 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.93 Total: 13.50 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -6.43 Total: -110.32 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -75.35 1.54 -73.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.779 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds