Wall clock time and date at job start Mon Mar 30 2020 03:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50691 * 109.47359 * 2 1 4 4 O 1.21285 * 119.99995 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00462 * 179.97438 * 3 2 1 6 6 C 1.47085 * 120.87693 * 359.72540 * 5 3 2 7 7 C 1.52789 * 108.76540 * 231.12205 * 6 5 3 8 8 N 1.46890 * 109.41878 * 306.42375 * 7 6 5 9 9 C 1.46904 * 110.99898 * 187.11540 * 8 7 6 10 10 C 1.46903 * 111.27114 * 62.96770 * 8 7 6 11 11 H 1.08995 * 109.49266 * 56.85103 * 10 8 7 12 12 C 1.50704 * 109.51676 * 176.91919 * 10 8 7 13 13 H 1.07996 * 119.99719 * 33.03996 * 12 10 8 14 14 C 1.37868 * 119.99955 * 213.04552 * 12 10 8 15 15 N 1.31514 * 120.00503 * 5.97612 * 14 12 10 16 16 Si 1.86801 * 119.99851 * 185.98146 * 14 12 10 17 17 H 1.48496 * 109.47477 * 59.99760 * 16 14 12 18 18 H 1.48500 * 109.47096 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47201 * 299.99600 * 16 14 12 20 20 C 1.47078 * 120.88564 * 180.02562 * 5 3 2 21 21 H 1.09001 * 109.46862 * 60.00119 * 1 2 3 22 22 H 1.09000 * 109.47086 * 300.00026 * 1 2 3 23 23 H 1.09002 * 109.47421 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47016 * 120.00414 * 2 1 3 25 25 H 1.09000 * 109.47086 * 239.99974 * 2 1 3 26 26 H 1.09009 * 109.62620 * 350.88633 * 6 5 3 27 27 H 1.08993 * 109.62817 * 111.46747 * 6 5 3 28 28 H 1.08997 * 109.56336 * 186.37056 * 7 6 5 29 29 H 1.08999 * 109.35772 * 66.35224 * 7 6 5 30 30 H 1.09004 * 109.46879 * 289.43757 * 9 8 7 31 31 H 1.08997 * 109.46898 * 49.43911 * 9 8 7 32 32 H 1.09004 * 109.47276 * 169.44555 * 9 8 7 33 33 H 0.96997 * 120.00563 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.62773 * 248.52633 * 20 5 3 35 35 H 1.08990 * 109.62583 * 9.11007 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3303 0.5639 0.0071 7 6 5.3350 0.8013 1.1335 8 7 5.9170 2.1427 0.9941 9 6 7.0083 2.3457 1.9564 10 6 4.8918 3.1856 1.1331 11 1 4.3884 3.0751 2.0935 12 6 5.5416 4.5434 1.0592 13 1 6.4098 4.6933 0.4346 14 6 5.0277 5.5941 1.7891 15 7 4.0454 5.3866 2.6385 16 14 5.7267 7.3127 1.5714 17 1 5.5583 7.7404 0.1593 18 1 5.0065 8.2566 2.4632 19 1 7.1707 7.3074 1.9181 20 6 3.8691 3.0460 0.0011 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.8119 -0.3805 0.1737 27 1 4.8555 0.5331 -0.9474 28 1 6.1266 0.0539 1.0801 29 1 4.8258 0.7238 2.0941 30 1 6.5960 2.4222 2.9625 31 1 7.6963 1.5017 1.9088 32 1 7.5423 3.2640 1.7119 33 1 3.6841 6.1258 3.1523 34 1 4.3491 3.2588 -0.9540 35 1 3.0460 3.7417 0.1636 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259833499.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:24 Heat of formation + Delta-G solvation = -32.502544 kcal Electronic energy + Delta-G solvation = -16498.396108 eV Core-core repulsion = 13917.303053 eV Total energy + Delta-G solvation = -2581.093055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.51888 -37.31097 -33.99266 -32.82705 -32.45591 -30.06548 -27.86200 -25.56364 -24.27219 -22.74414 -22.31559 -19.80697 -18.13594 -16.83872 -16.28566 -15.32918 -15.20992 -14.80752 -14.18060 -13.70877 -13.59398 -13.44376 -13.15271 -12.30593 -12.23454 -11.97607 -11.78018 -11.34524 -11.24228 -10.99576 -10.96274 -10.83305 -10.75983 -10.50882 -10.09841 -9.77816 -9.45830 -9.00442 -8.60641 -7.95783 -7.19067 -6.10373 -4.16329 3.20244 3.29322 3.35158 3.37290 3.66163 4.35920 4.88616 4.93433 5.21993 5.25280 5.28749 5.45610 5.62148 5.67466 5.73342 5.89549 6.04794 6.09808 6.16651 6.31717 6.37418 6.51619 6.57825 6.77755 6.89409 7.08064 7.13884 7.56479 7.77253 7.86967 8.07975 8.20211 8.50695 8.80790 8.98433 9.50081 10.97275 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.029354 B = 0.009001 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.637352 B = 3109.846482 C = 3804.148844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C 0.503 3.497 4 O -0.548 6.548 5 N -0.612 5.612 6 C 0.115 3.885 7 C 0.038 3.962 8 N -0.545 5.545 9 C 0.051 3.949 10 C 0.195 3.805 11 H 0.036 0.964 12 C -0.513 4.513 13 H 0.064 0.936 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.128 3.872 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.015 0.985 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.265 0.735 34 H 0.055 0.945 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 -11.364 -3.397 11.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.184 4.184 3 C 0.291 3.709 4 O -0.426 6.426 5 N -0.345 5.345 6 C -0.009 4.009 7 C -0.091 4.091 8 N -0.271 5.271 9 C -0.098 4.098 10 C 0.089 3.911 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.082 0.918 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.726 3.274 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.201 1.201 20 C 0.007 3.993 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.334 -10.726 -3.729 11.361 hybrid contribution 0.105 0.804 0.817 1.151 sum -0.230 -9.922 -2.913 10.343 Atomic orbital electron populations 1.21509 0.93526 1.00860 1.03321 1.21641 0.98196 0.95012 1.03507 1.20654 0.82281 0.91331 0.76625 1.90672 1.54836 1.46595 1.50472 1.48593 1.04880 1.09023 1.72010 1.21649 0.90422 0.89249 0.99538 1.22315 0.96559 0.93765 0.96493 1.62166 1.12659 1.01152 1.51085 1.22007 0.93645 1.00687 0.93419 1.19736 0.87881 0.89384 0.94132 0.94615 1.20875 1.14168 0.92735 1.27374 0.91766 1.25049 0.94965 0.99545 0.94223 1.69935 1.25857 1.32171 1.24258 0.86559 0.78986 0.83600 0.78296 1.19947 1.21289 1.20130 1.22249 0.97666 0.79504 0.99930 0.92165 0.92047 0.92621 0.89477 0.89519 0.90642 0.91257 0.91137 0.95645 0.96618 0.94306 0.90705 0.92539 0.92653 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.20 37.16 0.34 -1.40 16 2 C -0.14 -1.94 4.79 -27.89 -0.13 -2.08 16 3 C 0.50 9.82 7.71 -10.99 -0.08 9.74 16 4 O -0.55 -13.06 15.44 5.55 0.09 -12.97 16 5 N -0.61 -12.15 3.02 -172.77 -0.52 -12.67 16 6 C 0.12 1.79 6.47 -3.83 -0.02 1.77 16 7 C 0.04 0.66 5.60 -3.94 -0.02 0.64 16 8 N -0.55 -11.55 4.72 -236.30 -1.12 -12.67 16 9 C 0.05 1.01 9.11 60.07 0.55 1.56 16 10 C 0.20 4.89 2.11 -68.76 -0.15 4.75 16 11 H 0.04 1.04 7.28 -51.93 -0.38 0.66 16 12 C -0.51 -13.79 6.97 -34.44 -0.24 -14.03 16 13 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 14 C 0.07 1.82 5.45 -17.82 -0.10 1.73 16 15 N -0.89 -25.87 12.79 55.43 0.71 -25.16 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.13 3.06 5.87 -3.62 -0.02 3.03 16 21 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 22 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.09 1.04 7.65 -51.93 -0.40 0.64 16 25 H 0.09 0.96 8.01 -51.93 -0.42 0.54 16 26 H 0.08 0.90 6.02 -51.92 -0.31 0.59 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.00 7.98 -51.93 -0.41 0.59 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.33 8.12 -51.93 -0.42 -0.10 16 31 H 0.04 0.64 7.96 -51.93 -0.41 0.22 16 32 H 0.07 1.58 7.04 -51.93 -0.37 1.21 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 2.37 7.06 -51.93 -0.37 2.01 16 LS Contribution 281.94 15.07 4.25 4.25 Total: -1.00 -31.37 281.94 -7.05 -38.42 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.55 Total: -1.09 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 0.12 Total: 5.70 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.93 Total: -50.50 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.37 -7.05 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833499.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.920 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds