Wall clock time and date at job start Mon Mar 30 2020 03:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47069 * 2 1 4 4 O 1.21286 * 120.00076 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00018 * 179.97438 * 3 2 1 6 6 C 1.47086 * 120.87893 * 356.61145 * 5 3 2 7 7 C 1.53242 * 108.52220 * 231.20324 * 6 5 3 8 8 N 1.46899 * 109.34093 * 306.17349 * 7 6 5 9 9 C 1.46900 * 110.99934 * 187.25168 * 8 7 6 10 10 C 1.46901 * 111.26882 * 63.10059 * 8 7 6 11 11 C 1.47138 * 120.87135 * 176.63441 * 5 3 2 12 12 H 1.09003 * 109.62450 * 248.49604 * 11 5 3 13 13 C 1.50698 * 109.66176 * 9.09957 * 11 5 3 14 14 H 1.08000 * 120.00097 * 35.29783 * 13 11 5 15 15 C 1.37875 * 119.99600 * 215.30693 * 13 11 5 16 16 N 1.31516 * 120.00524 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99677 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47526 * 59.99471 * 17 15 13 19 19 H 1.48499 * 109.47316 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47334 * 299.99238 * 17 15 13 21 21 H 1.08993 * 109.47061 * 59.99758 * 1 2 3 22 22 H 1.08995 * 109.47387 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46816 * 300.00244 * 1 2 3 24 24 H 1.09001 * 109.46816 * 239.99756 * 2 1 3 25 25 H 1.08998 * 109.46863 * 119.99832 * 2 1 3 26 26 H 1.09004 * 109.62644 * 111.49907 * 6 5 3 27 27 H 1.08997 * 109.78862 * 351.01205 * 6 5 3 28 28 H 1.08996 * 109.49143 * 186.20904 * 7 6 5 29 29 H 1.08998 * 109.51019 * 66.14584 * 7 6 5 30 30 H 1.09002 * 109.46960 * 295.69970 * 9 8 7 31 31 H 1.09000 * 109.47208 * 55.69930 * 9 8 7 32 32 H 1.09001 * 109.46753 * 175.69758 * 9 8 7 33 33 H 1.09006 * 109.48951 * 56.85777 * 10 8 7 34 34 H 1.08998 * 109.49198 * 176.90651 * 10 8 7 35 35 H 0.97002 * 120.00167 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3298 0.5661 0.0757 7 6 5.3219 0.8691 1.2036 8 7 5.9060 2.2004 0.9933 9 6 6.9865 2.4591 1.9543 10 6 4.8796 3.2493 1.0602 11 6 3.8693 3.0446 -0.0736 12 1 4.3602 3.2015 -1.0341 13 6 2.7296 4.0181 0.0821 14 1 1.9071 3.7856 0.7422 15 6 2.7369 5.2056 -0.6184 16 7 3.7387 5.4890 -1.4221 17 14 1.3238 6.4121 -0.4261 18 1 1.2228 6.8339 0.9942 19 1 1.5696 7.6025 -1.2792 20 1 0.0558 5.7594 -0.8399 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.8649 0.4850 -0.8705 27 1 3.8120 -0.3699 0.2850 28 1 6.1138 0.1201 1.2024 29 1 4.8021 0.8471 2.1614 30 1 6.5766 2.4830 2.9641 31 1 7.7327 1.6677 1.8837 32 1 7.4519 3.4185 1.7282 33 1 4.3655 3.1943 2.0199 34 1 5.3508 4.2265 0.9555 35 1 3.7439 6.3247 -1.9146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259892338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:18 Heat of formation + Delta-G solvation = -9.312215 kcal Electronic energy + Delta-G solvation = -16741.943192 eV Core-core repulsion = 14161.855744 eV Total energy + Delta-G solvation = -2580.087447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.28419 -37.13168 -33.70171 -33.15701 -31.86483 -29.92994 -27.93523 -25.29396 -24.01202 -23.40666 -21.66853 -20.06992 -17.94429 -17.13415 -15.49277 -15.10741 -14.81660 -14.54634 -14.20486 -14.01756 -13.82697 -13.33531 -12.89823 -12.25272 -12.12403 -11.81210 -11.48817 -11.28578 -11.24379 -11.12138 -10.91563 -10.76148 -10.59837 -10.42495 -10.21464 -10.10854 -9.24159 -8.48650 -7.90762 -7.62568 -7.20806 -5.89235 -3.79661 3.45544 3.48516 3.57771 3.74192 4.06539 4.50982 4.66085 5.22828 5.37658 5.46245 5.52716 5.54099 5.61423 5.64326 5.76992 5.84936 5.87141 6.06691 6.12509 6.18148 6.31052 6.34905 6.50420 6.59442 6.59626 6.98732 7.47118 7.65375 7.76947 7.82735 8.16882 8.18584 8.82684 9.27712 9.46555 9.78361 11.20291 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.013728 C = 0.008488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.969501 B = 2039.085588 C = 3297.833776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 C 0.502 3.498 4 O -0.502 6.502 5 N -0.613 5.613 6 C 0.111 3.889 7 C 0.046 3.954 8 N -0.547 5.547 9 C 0.028 3.972 10 C 0.059 3.941 11 C 0.266 3.734 12 H 0.065 0.935 13 C -0.486 4.486 14 H 0.093 0.907 15 C 0.055 3.945 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.276 1.276 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.078 0.922 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.343 -11.062 4.421 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.288 3.712 4 O -0.376 6.376 5 N -0.347 5.347 6 C -0.014 4.014 7 C -0.084 4.084 8 N -0.272 5.272 9 C -0.120 4.120 10 C -0.069 4.069 11 C 0.166 3.834 12 H 0.083 0.917 13 C -0.525 4.525 14 H 0.111 0.889 15 C -0.145 4.145 16 N -0.544 5.544 17 Si 0.730 3.270 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.201 1.201 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.170 -10.383 3.827 11.277 hybrid contribution -0.756 0.532 0.865 1.266 sum 1.413 -9.852 4.692 11.003 Atomic orbital electron populations 1.21474 0.93992 1.00282 1.03229 1.21810 0.97916 0.96912 1.02606 1.20423 0.82745 0.90216 0.77780 1.90774 1.55371 1.44095 1.47365 1.48771 1.04574 1.08572 1.72831 1.21637 0.90904 0.90365 0.98499 1.22382 0.96898 0.91968 0.97112 1.62113 1.12525 1.02573 1.49997 1.22307 0.94682 1.01698 0.93354 1.22876 0.91523 0.93411 0.99118 1.19288 0.92579 0.76419 0.95116 0.91681 1.21741 1.05133 0.99795 1.25807 0.88903 1.24964 0.95960 0.98379 0.95211 1.69945 1.31074 1.24523 1.28861 0.86491 0.83195 0.79650 0.77620 1.20585 1.21836 1.20120 0.92112 0.93205 0.92321 0.90194 0.90469 0.91670 0.90867 0.90969 0.95366 0.96549 0.92377 0.91588 0.96287 0.90352 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.20 37.16 0.34 -1.62 16 2 C -0.15 -2.36 4.82 -27.88 -0.13 -2.49 16 3 C 0.50 10.90 7.62 -10.99 -0.08 10.82 16 4 O -0.50 -13.15 11.89 5.55 0.07 -13.09 16 5 N -0.61 -13.28 3.01 -166.19 -0.50 -13.78 16 6 C 0.11 1.82 6.49 -3.60 -0.02 1.80 16 7 C 0.05 0.73 5.62 -3.70 -0.02 0.71 16 8 N -0.55 -10.29 4.88 -242.61 -1.18 -11.47 16 9 C 0.03 0.43 9.58 60.06 0.58 1.01 16 10 C 0.06 1.34 4.89 -3.70 -0.02 1.32 16 11 C 0.27 6.81 3.16 -68.61 -0.22 6.60 16 12 H 0.07 1.89 7.30 -51.93 -0.38 1.51 16 13 C -0.49 -13.98 6.42 -34.44 -0.22 -14.20 16 14 H 0.09 2.81 5.47 -53.20 -0.29 2.52 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.01 12.79 55.43 0.71 -26.30 16 17 Si 0.90 23.25 29.54 -169.99 -5.02 18.23 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 21 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 24 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 25 H 0.08 1.02 7.52 -51.93 -0.39 0.63 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.95 6.05 -51.93 -0.31 0.64 16 28 H 0.07 0.93 8.06 -51.93 -0.42 0.52 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.91 8.11 -51.93 -0.42 1.48 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -32.32 278.75 -7.20 -39.52 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.57 Total: -2.76 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 0.10 Total: 5.45 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.98 Total: -51.55 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.32 -7.20 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259892338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.206 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds