Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 N 1.46496 * 109.47266 * 120.00113 * 2 1 3 5 5 C 1.33480 * 117.59606 * 298.90600 * 4 2 1 6 6 O 1.21283 * 118.69165 * 2.79052 * 5 4 2 7 7 C 1.50490 * 122.62315 * 182.79853 * 5 4 2 8 8 C 1.53303 * 109.06878 * 343.75957 * 7 5 4 9 9 C 1.53416 * 107.99179 * 45.80045 * 8 7 5 10 10 N 1.35553 * 117.59396 * 118.93304 * 4 2 1 11 11 C 1.46903 * 110.99775 * 283.98281 * 10 4 2 12 12 C 1.50704 * 109.46664 * 164.45614 * 11 10 4 13 13 H 1.08000 * 120.00363 * 356.44177 * 12 11 10 14 14 C 1.37873 * 119.99548 * 176.71199 * 12 11 10 15 15 N 1.31511 * 120.00671 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99660 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46940 * 90.00641 * 16 14 12 18 18 H 1.48505 * 109.46965 * 210.00179 * 16 14 12 19 19 H 1.48494 * 109.47280 * 330.00188 * 16 14 12 20 20 H 1.09000 * 109.47475 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47286 * 300.00069 * 1 2 3 22 22 H 1.09003 * 109.47677 * 60.00024 * 1 2 3 23 23 H 1.09005 * 109.47230 * 240.00689 * 2 1 3 24 24 H 1.09002 * 109.47559 * 172.71499 * 3 2 1 25 25 H 1.09003 * 109.47128 * 292.71399 * 3 2 1 26 26 H 1.08999 * 109.47130 * 52.71097 * 3 2 1 27 27 H 1.09001 * 109.53303 * 103.63392 * 7 5 4 28 28 H 1.09000 * 109.54293 * 223.79759 * 7 5 4 29 29 H 1.08994 * 109.76181 * 165.41244 * 8 7 5 30 30 H 1.09003 * 109.75720 * 286.10994 * 8 7 5 31 31 H 1.09001 * 109.57931 * 174.37096 * 9 8 7 32 32 H 1.09000 * 109.55360 * 53.99827 * 9 8 7 33 33 H 1.08995 * 109.46814 * 44.46173 * 11 10 4 34 34 H 1.08994 * 109.46986 * 284.45730 * 11 10 4 35 35 H 0.96996 * 120.00833 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6853 -0.1806 2.3838 6 8 0.9590 0.7901 2.4178 7 6 2.1753 -0.7619 3.6826 8 6 2.7162 -2.1734 3.4271 9 6 3.6078 -2.1206 2.1797 10 7 2.7756 -1.8003 1.0153 11 6 1.9436 -2.9484 0.6309 12 6 2.8207 -4.0402 0.0742 13 1 3.8816 -3.8744 -0.0414 14 6 2.2678 -5.2487 -0.2927 15 7 0.9750 -5.4487 -0.1574 16 14 3.3551 -6.6023 -0.9821 17 1 3.8543 -7.4507 0.1298 18 1 2.5687 -7.4362 -1.9263 19 1 4.5064 -5.9962 -1.6977 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 3.1221 1.4453 0.1303 25 1 1.7869 1.9173 -0.9480 26 1 1.5741 1.9926 0.8176 27 1 2.9700 -0.1344 4.0859 28 1 1.3514 -0.8093 4.3947 29 1 3.3019 -2.5044 4.2846 30 1 1.8872 -2.8610 3.2598 31 1 4.0863 -3.0886 2.0315 32 1 4.3688 -1.3507 2.3076 33 1 1.2243 -2.6383 -0.1270 34 1 1.4115 -3.3206 1.5063 35 1 0.5860 -6.2987 -0.4158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -4.696748 kcal Electronic energy + Delta-G solvation = -16832.658377 eV Core-core repulsion = 14252.771072 eV Total energy + Delta-G solvation = -2579.887305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.53289 -36.98765 -35.06260 -33.08023 -31.66509 -30.09828 -27.26053 -26.67130 -24.95456 -23.32171 -22.09851 -20.85693 -17.70651 -16.90758 -16.17379 -15.88948 -15.16622 -14.72338 -14.17911 -13.76150 -13.53773 -13.43878 -12.99116 -12.64404 -12.36976 -11.98579 -11.73784 -11.54747 -11.23893 -10.95229 -10.90517 -10.83787 -10.69424 -10.50365 -10.40074 -10.16016 -9.61609 -9.20124 -8.65454 -8.48478 -7.15402 -6.16004 -4.19201 3.04961 3.24206 3.27427 3.32143 3.37736 4.33786 4.72240 5.14200 5.19963 5.22037 5.26401 5.49866 5.60386 5.70682 5.74949 5.87734 5.99383 6.03901 6.10716 6.31282 6.31808 6.38606 6.46345 6.53296 6.68315 6.79436 6.92728 7.14939 7.35146 7.67892 7.89365 8.13489 8.54878 8.87583 9.16184 9.45467 10.94838 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032640 B = 0.008878 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.632533 B = 3152.939350 C = 3534.861377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.156 3.844 3 C -0.162 4.162 4 N -0.433 5.433 5 C 0.493 3.507 6 O -0.565 6.565 7 C -0.135 4.135 8 C -0.161 4.161 9 C 0.047 3.953 10 N -0.308 5.308 11 C 0.171 3.829 12 C -0.511 4.511 13 H 0.067 0.933 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.271 1.271 20 H 0.056 0.944 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.004 0.996 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 7.298 3.719 8.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.054 3.946 3 C -0.220 4.220 4 N -0.250 5.250 5 C 0.280 3.720 6 O -0.444 6.444 7 C -0.175 4.175 8 C -0.200 4.200 9 C -0.082 4.082 10 N -0.125 5.125 11 C 0.046 3.954 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.196 1.196 20 H 0.075 0.925 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.935 7.792 3.340 8.972 hybrid contribution -0.003 -1.303 0.319 1.342 sum 2.932 6.489 3.659 8.006 Atomic orbital electron populations 1.22288 0.95279 1.02500 1.02974 1.20920 0.93870 0.92328 0.87518 1.22160 1.01033 0.96299 1.02504 1.47125 1.49381 1.23067 1.05438 1.20510 0.80791 0.84803 0.85885 1.90560 1.37812 1.28777 1.87296 1.21761 1.02527 0.97655 0.95532 1.22297 1.01651 0.95934 1.00145 1.22525 0.95208 1.03254 0.87170 1.63261 1.17629 0.99168 1.32402 1.20381 0.93021 0.86067 0.95967 1.20989 0.94870 0.96794 1.42433 0.91490 1.24970 0.95083 0.98532 0.95709 1.69957 1.10634 1.24884 1.47770 0.86450 0.80339 0.81479 0.78898 1.20631 1.21197 1.19622 0.92495 0.90311 0.92280 0.88756 0.92889 0.92291 0.90614 0.88884 0.88933 0.90662 0.90321 0.87524 0.91433 0.94646 0.97861 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.09 37.15 0.34 -2.72 16 2 C 0.16 2.84 2.61 -67.94 -0.18 2.66 16 3 C -0.16 -2.55 8.94 37.16 0.33 -2.22 16 4 N -0.43 -8.45 2.52 -54.20 -0.14 -8.59 16 5 C 0.49 9.33 6.87 -11.66 -0.08 9.25 16 6 O -0.57 -11.56 12.57 5.55 0.07 -11.49 16 7 C -0.13 -2.09 6.16 -27.83 -0.17 -2.26 16 8 C -0.16 -2.57 6.09 -26.36 -0.16 -2.73 16 9 C 0.05 0.82 5.82 -3.73 -0.02 0.80 16 10 N -0.31 -6.38 4.68 -114.99 -0.54 -6.92 16 11 C 0.17 4.20 4.83 -4.97 -0.02 4.17 16 12 C -0.51 -13.40 8.29 -34.44 -0.29 -13.68 16 13 H 0.07 1.72 7.55 -52.49 -0.40 1.32 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 16 Si 0.90 20.59 29.54 -169.99 -5.02 15.56 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H 0.06 1.11 7.63 -51.93 -0.40 0.71 16 21 H 0.08 1.49 5.89 -51.93 -0.31 1.18 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.09 1.77 7.95 -51.93 -0.41 1.36 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.29 6.15 -51.93 -0.32 0.97 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.46 6.45 -51.93 -0.34 1.13 16 31 H 0.11 1.97 6.92 -51.93 -0.36 1.61 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.04 0.95 6.95 -51.93 -0.36 0.59 16 34 H 0.00 0.10 6.36 -51.93 -0.33 -0.24 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 275.21 15.07 4.15 4.15 Total: -1.00 -28.99 275.21 -6.40 -35.39 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.31 Total: 1.82 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.35 Total: -5.22 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.06 Total: -40.22 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.07 Total: -11.49 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.99 -6.40 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.693 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds