Wall clock time and date at job start Mon Mar 30 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 N 1.46496 * 109.47266 * 120.00113 * 2 1 3 5 5 C 1.33480 * 117.59606 * 298.90600 * 4 2 1 6 6 O 1.21283 * 118.69165 * 2.79052 * 5 4 2 7 7 C 1.50490 * 122.62315 * 182.79853 * 5 4 2 8 8 C 1.53303 * 109.06878 * 343.75957 * 7 5 4 9 9 C 1.53416 * 107.99179 * 45.80045 * 8 7 5 10 10 N 1.35553 * 117.59396 * 118.93304 * 4 2 1 11 11 C 1.46903 * 110.99775 * 283.98281 * 10 4 2 12 12 C 1.50704 * 109.46664 * 164.45614 * 11 10 4 13 13 H 1.08000 * 120.00363 * 356.44177 * 12 11 10 14 14 C 1.37873 * 119.99548 * 176.71199 * 12 11 10 15 15 N 1.31511 * 120.00671 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99660 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46940 * 90.00641 * 16 14 12 18 18 H 1.48505 * 109.46965 * 210.00179 * 16 14 12 19 19 H 1.48494 * 109.47280 * 330.00188 * 16 14 12 20 20 H 1.09000 * 109.47475 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47286 * 300.00069 * 1 2 3 22 22 H 1.09003 * 109.47677 * 60.00024 * 1 2 3 23 23 H 1.09005 * 109.47230 * 240.00689 * 2 1 3 24 24 H 1.09002 * 109.47559 * 172.71499 * 3 2 1 25 25 H 1.09003 * 109.47128 * 292.71399 * 3 2 1 26 26 H 1.08999 * 109.47130 * 52.71097 * 3 2 1 27 27 H 1.09001 * 109.53303 * 103.63392 * 7 5 4 28 28 H 1.09000 * 109.54293 * 223.79759 * 7 5 4 29 29 H 1.08994 * 109.76181 * 165.41244 * 8 7 5 30 30 H 1.09003 * 109.75720 * 286.10994 * 8 7 5 31 31 H 1.09001 * 109.57931 * 174.37096 * 9 8 7 32 32 H 1.09000 * 109.55360 * 53.99827 * 9 8 7 33 33 H 1.08995 * 109.46814 * 44.46173 * 11 10 4 34 34 H 1.08994 * 109.46986 * 284.45730 * 11 10 4 35 35 H 0.96996 * 120.00833 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6853 -0.1806 2.3838 6 8 0.9590 0.7901 2.4178 7 6 2.1753 -0.7619 3.6826 8 6 2.7162 -2.1734 3.4271 9 6 3.6078 -2.1206 2.1797 10 7 2.7756 -1.8003 1.0153 11 6 1.9436 -2.9484 0.6309 12 6 2.8207 -4.0402 0.0742 13 1 3.8816 -3.8744 -0.0414 14 6 2.2678 -5.2487 -0.2927 15 7 0.9750 -5.4487 -0.1574 16 14 3.3551 -6.6023 -0.9821 17 1 3.8543 -7.4507 0.1298 18 1 2.5687 -7.4362 -1.9263 19 1 4.5064 -5.9962 -1.6977 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 3.1221 1.4453 0.1303 25 1 1.7869 1.9173 -0.9480 26 1 1.5741 1.9926 0.8176 27 1 2.9700 -0.1344 4.0859 28 1 1.3514 -0.8093 4.3947 29 1 3.3019 -2.5044 4.2846 30 1 1.8872 -2.8610 3.2598 31 1 4.0863 -3.0886 2.0315 32 1 4.3688 -1.3507 2.3076 33 1 1.2243 -2.6383 -0.1270 34 1 1.4115 -3.3206 1.5063 35 1 0.5860 -6.2987 -0.4158 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:56 Heat of formation + Delta-G solvation = -22.754916 kcal Electronic energy + Delta-G solvation = -16833.441438 eV Core-core repulsion = 14252.771072 eV Total energy + Delta-G solvation = -2580.670366 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.04314 -38.57676 -36.47070 -35.05140 -33.17026 -31.73173 -28.99123 -28.08495 -26.59938 -24.82459 -23.87774 -22.30229 -19.21926 -18.63879 -18.00579 -17.41778 -16.71807 -16.44732 -15.71942 -15.29000 -15.01514 -14.87288 -14.62092 -14.15847 -14.08704 -13.36854 -13.23409 -13.03054 -12.86910 -12.73234 -12.53695 -12.34198 -12.16635 -12.13256 -11.90329 -11.77072 -11.45335 -10.86691 -10.59000 -10.13569 -8.79013 -8.22508 -6.33085 1.43937 1.45474 1.54216 1.58513 1.83909 2.42897 3.12161 3.25189 3.82840 3.84924 3.96612 4.06154 4.19387 4.34338 4.39076 4.61040 4.65966 4.75298 4.81362 4.88282 4.91384 4.98076 5.02976 5.09002 5.19038 5.29935 5.31939 5.42488 5.51703 5.68833 6.03865 6.16836 6.81350 7.04132 7.36689 7.58521 8.89162 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.032640 B = 0.008878 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.632533 B = 3152.939350 C = 3534.861377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 C -0.147 4.147 4 N -0.440 5.440 5 C 0.482 3.518 6 O -0.582 6.582 7 C -0.129 4.129 8 C -0.152 4.152 9 C 0.041 3.959 10 N -0.310 5.310 11 C 0.190 3.810 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.006 3.994 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.261 1.261 20 H 0.027 0.973 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.003 0.997 34 H -0.025 1.025 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.937 7.792 4.196 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 C -0.206 4.206 4 N -0.257 5.257 5 C 0.271 3.729 6 O -0.463 6.463 7 C -0.168 4.168 8 C -0.191 4.191 9 C -0.086 4.086 10 N -0.127 5.127 11 C 0.064 3.936 12 C -0.558 4.558 13 H 0.091 0.909 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.795 3.205 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.185 1.185 20 H 0.046 0.954 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.101 0.899 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.021 0.979 34 H -0.008 1.008 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.732 8.301 3.830 10.294 hybrid contribution -0.589 -1.396 0.184 1.526 sum 4.142 6.905 4.015 8.998 Atomic orbital electron populations 1.22194 0.95327 1.00758 1.03775 1.21106 0.93938 0.93719 0.86928 1.22035 1.00865 0.94191 1.03460 1.47256 1.49631 1.22511 1.06316 1.21190 0.80398 0.84581 0.86721 1.90553 1.38466 1.29613 1.87640 1.21822 1.03878 0.97376 0.93721 1.22204 1.00518 0.95674 1.00706 1.22668 0.95441 1.03724 0.86773 1.63213 1.16676 0.98112 1.34677 1.19984 0.92504 0.87298 0.93823 1.21293 0.95228 0.97302 1.41978 0.90907 1.25879 0.96285 1.01099 0.95962 1.70098 1.12598 1.25579 1.49064 0.85354 0.78545 0.78302 0.78265 1.19656 1.21338 1.18548 0.95370 0.91390 0.89520 0.89903 0.92607 0.89693 0.91781 0.85575 0.87838 0.86934 0.93787 0.88502 0.88531 0.97881 1.00752 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.09 71.98 0.65 -5.20 16 2 C 0.15 5.29 2.61 44.99 0.12 5.41 16 3 C -0.15 -4.43 8.94 71.98 0.64 -3.79 16 4 N -0.44 -17.11 2.52 -444.51 -1.12 -18.23 16 5 C 0.48 17.81 6.87 87.79 0.60 18.42 16 6 O -0.58 -23.37 12.57 -3.04 -0.04 -23.41 16 7 C -0.13 -3.67 6.16 29.88 0.18 -3.49 16 8 C -0.15 -4.59 6.09 30.84 0.19 -4.40 16 9 C 0.04 1.40 5.82 86.49 0.50 1.90 16 10 N -0.31 -12.86 4.68 -517.73 -2.42 -15.28 16 11 C 0.19 9.67 4.83 85.56 0.41 10.09 16 12 C -0.52 -27.49 8.29 25.60 0.21 -27.28 16 13 H 0.07 3.70 7.55 -2.91 -0.02 3.68 16 14 C 0.01 0.35 5.46 84.65 0.46 0.81 16 15 N -0.93 -54.46 13.29 21.45 0.28 -54.18 16 16 Si 0.97 42.11 29.54 68.60 2.03 44.13 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 20 H 0.03 1.14 7.63 -2.39 -0.02 1.12 16 21 H 0.07 2.59 5.89 -2.39 -0.01 2.58 16 22 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.08 3.17 7.95 -2.38 -0.02 3.15 16 24 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.10 6.15 -2.39 -0.01 2.08 16 27 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.04 1.64 6.45 -2.39 -0.02 1.63 16 31 H 0.10 3.47 6.92 -2.39 -0.02 3.46 16 32 H 0.10 2.74 8.13 -2.39 -0.02 2.72 16 33 H 0.00 0.18 6.95 -2.39 -0.02 0.16 16 34 H -0.03 -1.41 6.36 -2.39 -0.02 -1.43 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -63.47 275.21 3.77 -59.70 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.06 Total: 14.81 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 3.98 Total: -7.53 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -3.26 Total: -87.69 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.04 Total: -23.41 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -63.47 3.77 -59.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.942 kcal (2) G-P(sol) polarization free energy of solvation -63.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds