Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47566 * 2 1 4 4 N 1.46899 * 109.47392 * 185.25334 * 3 2 1 5 5 C 1.46662 * 111.00036 * 291.89870 * 4 3 2 6 6 C 1.53406 * 108.86110 * 287.05580 * 5 4 3 7 7 C 1.53319 * 107.99244 * 294.19032 * 6 5 4 8 8 C 1.50493 * 109.06184 * 45.80149 * 7 6 5 9 9 O 1.21277 * 118.68457 * 163.77397 * 8 7 6 10 10 N 1.33477 * 122.62366 * 343.75585 * 8 7 6 11 11 C 1.46505 * 117.59187 * 182.80048 * 10 8 7 12 12 C 1.50699 * 109.47111 * 274.67104 * 11 10 8 13 13 H 1.07998 * 120.00082 * 357.28615 * 12 11 10 14 14 C 1.37871 * 119.99761 * 177.28304 * 12 11 10 15 15 N 1.31516 * 120.00756 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99861 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46965 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46892 * 119.99905 * 16 14 12 19 19 H 1.48499 * 109.46983 * 239.99740 * 16 14 12 20 20 H 1.08997 * 109.46512 * 300.00123 * 1 2 3 21 21 H 1.09000 * 109.46839 * 59.99904 * 1 2 3 22 22 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47111 * 239.99563 * 2 1 3 24 24 H 1.09000 * 109.47102 * 120.00577 * 2 1 3 25 25 H 1.08999 * 109.46966 * 305.25351 * 3 2 1 26 26 H 1.09001 * 109.46819 * 65.25596 * 3 2 1 27 27 H 1.08997 * 109.57460 * 46.87892 * 5 4 3 28 28 H 1.09001 * 109.57673 * 167.26011 * 5 4 3 29 29 H 1.09005 * 109.74755 * 174.57780 * 6 5 4 30 30 H 1.08998 * 109.81804 * 53.84904 * 6 5 4 31 31 H 1.08996 * 109.53876 * 285.93001 * 7 6 5 32 32 H 1.08997 * 109.60915 * 165.72300 * 7 6 5 33 33 H 1.08993 * 109.47422 * 34.67506 * 11 10 8 34 34 H 1.09009 * 109.46755 * 154.67484 * 11 10 8 35 35 H 0.96991 * 120.00770 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5036 1.4443 -0.1268 5 6 4.1362 0.8958 1.0773 6 6 4.0127 1.9199 2.2128 7 6 4.8453 3.1502 1.8336 8 6 4.5572 3.5166 0.4026 9 8 4.8792 4.6170 0.0074 10 7 3.9617 2.6787 -0.4488 11 6 3.7912 3.1261 -1.8335 12 6 2.5248 3.9349 -1.9477 13 1 1.8861 4.0626 -1.0863 14 6 2.1818 4.5119 -3.1520 15 7 2.9593 4.3562 -4.2011 16 14 0.6123 5.5152 -3.2934 17 1 -0.0807 5.5379 -1.9802 18 1 0.9473 6.9033 -3.7011 19 1 -0.2775 4.9013 -4.3116 20 1 -0.3632 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6020 1.9827 -0.8392 26 1 1.7557 1.9283 0.9333 27 1 3.6358 -0.0292 1.3636 28 1 5.1893 0.6969 0.8783 29 1 4.3922 1.4897 3.1397 30 1 2.9688 2.2064 2.3400 31 1 5.9052 2.9215 1.9450 32 1 4.5821 3.9845 2.4837 33 1 4.6427 3.7412 -2.1240 34 1 3.7287 2.2584 -2.4905 35 1 2.7178 4.7618 -5.0484 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260830470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -30.687815 kcal Electronic energy + Delta-G solvation = -16676.316059 eV Core-core repulsion = 14095.301696 eV Total energy + Delta-G solvation = -2581.014363 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80666 -38.67237 -35.84347 -35.07445 -34.26041 -31.67748 -29.44229 -27.82626 -25.75769 -24.87613 -23.61889 -21.97332 -19.46320 -18.72301 -17.92131 -17.72780 -16.71009 -16.51665 -16.00010 -15.70971 -15.07920 -14.52730 -14.37647 -14.28457 -13.84466 -13.44929 -13.23648 -13.09678 -12.82199 -12.69440 -12.51237 -12.35549 -12.20576 -12.03763 -11.81712 -11.74110 -11.34473 -10.93164 -10.64324 -10.14590 -8.86922 -8.21963 -6.35273 1.33078 1.35902 1.46646 1.67148 1.95927 2.36871 3.06623 3.21154 3.76991 3.83417 3.95603 4.13158 4.21313 4.38504 4.51635 4.57422 4.63503 4.79813 4.80649 4.96676 5.01551 5.06838 5.13289 5.15564 5.23162 5.25668 5.38694 5.45451 5.55734 5.67787 5.99566 6.14658 6.69247 7.08248 7.32078 7.70495 8.85612 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.011165 C = 0.008409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.897642 B = 2507.280816 C = 3328.918876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.025 3.975 4 N -0.314 5.314 5 C 0.028 3.972 6 C -0.148 4.148 7 C -0.127 4.127 8 C 0.469 3.531 9 O -0.606 6.606 10 N -0.436 5.436 11 C 0.274 3.726 12 C -0.529 4.529 13 H 0.048 0.952 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.267 1.267 20 H 0.057 0.943 21 H 0.038 0.962 22 H 0.077 0.923 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.129 0.871 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.002 0.998 34 H 0.025 0.975 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 -11.342 13.661 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.103 4.103 4 N -0.131 5.131 5 C -0.099 4.099 6 C -0.187 4.187 7 C -0.167 4.167 8 C 0.257 3.743 9 O -0.487 6.487 10 N -0.253 5.253 11 C 0.153 3.847 12 C -0.568 4.568 13 H 0.066 0.934 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.096 0.904 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.147 0.853 28 H 0.107 0.893 29 H 0.143 0.857 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.020 0.980 34 H 0.043 0.957 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.966 -11.007 12.901 17.072 hybrid contribution -0.757 1.491 -0.063 1.673 sum -2.723 -9.516 12.838 16.211 Atomic orbital electron populations 1.21715 0.94776 1.02593 1.01489 1.21439 0.96137 0.93432 1.03185 1.22916 0.87020 0.99581 1.00736 1.62852 1.06179 1.06279 1.37797 1.22971 1.01681 0.98911 0.86331 1.22277 1.00216 0.94843 1.01337 1.21829 1.04009 1.01200 0.89640 1.21577 0.78998 0.83853 0.89887 1.90670 1.56008 1.23072 1.78909 1.47191 1.55445 1.11670 1.10995 1.18737 0.95525 0.93645 0.76817 1.21559 1.06897 1.32520 0.95830 0.93364 1.25805 1.00698 0.97258 0.95252 1.70054 1.39221 1.45721 1.01642 0.85417 0.79042 0.78269 0.78386 1.19301 1.20720 1.19210 0.92392 0.94230 0.90439 0.91760 0.89398 0.91914 0.94644 0.85334 0.89255 0.85733 0.91822 0.86317 0.88056 0.98016 0.95739 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.10 -2.51 5.81 30.59 0.18 -2.33 16 3 C 0.03 0.85 4.96 86.30 0.43 1.27 16 4 N -0.31 -11.23 4.75 -513.73 -2.44 -13.67 16 5 C 0.03 0.65 5.82 86.48 0.50 1.16 16 6 C -0.15 -3.15 6.09 30.84 0.19 -2.97 16 7 C -0.13 -3.68 6.16 29.89 0.18 -3.49 16 8 C 0.47 21.11 7.39 87.79 0.65 21.76 16 9 O -0.61 -34.18 16.29 -3.02 -0.05 -34.23 16 10 N -0.44 -20.06 2.59 -468.77 -1.21 -21.27 16 11 C 0.27 15.64 4.79 85.63 0.41 16.05 16 12 C -0.53 -31.52 7.71 25.60 0.20 -31.32 16 13 H 0.05 2.87 7.32 -2.91 -0.02 2.85 16 14 C 0.01 0.52 5.46 84.65 0.46 0.98 16 15 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 16 Si 0.96 46.22 29.54 68.60 2.03 48.24 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.57 6.61 -2.39 -0.02 1.55 16 25 H 0.06 2.72 5.78 -2.39 -0.01 2.71 16 26 H 0.04 1.14 6.38 -2.39 -0.02 1.13 16 27 H 0.13 2.14 6.21 -2.39 -0.01 2.13 16 28 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 29 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.49 6.46 -2.39 -0.02 1.47 16 31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.00 0.12 7.37 -2.39 -0.02 0.10 16 34 H 0.02 1.45 8.11 -2.38 -0.02 1.43 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.60 279.55 3.59 -73.02 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.06 Total: 6.61 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 3.91 Total: -1.43 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.37 Total: -92.22 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.05 Total: -34.23 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.60 3.59 -73.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.329 kcal (2) G-P(sol) polarization free energy of solvation -76.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds