Wall clock time and date at job start Mon Mar 30 2020 04:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47019 * 2 1 4 4 C 1.50701 * 109.46936 * 240.00534 * 2 1 3 5 5 H 1.07999 * 120.00023 * 334.44580 * 4 2 1 6 6 C 1.37881 * 119.99800 * 154.45280 * 4 2 1 7 7 N 1.31508 * 119.99649 * 174.46620 * 6 4 2 8 8 Si 1.86797 * 119.99966 * 354.45982 * 6 4 2 9 9 H 1.48501 * 109.46826 * 93.13263 * 8 6 4 10 10 H 1.48497 * 109.46960 * 213.12557 * 8 6 4 11 11 H 1.48495 * 109.47547 * 333.13159 * 8 6 4 12 12 N 1.46762 * 109.47118 * 120.00086 * 2 1 3 13 13 C 1.44455 * 111.61508 * 279.76746 * 12 2 1 14 14 C 1.52210 * 113.02817 * 200.35414 * 13 12 2 15 15 C 1.50734 * 110.32523 * 287.15026 * 14 13 12 16 16 O 1.22664 * 118.06492 * 244.94484 * 15 14 13 17 17 N 1.32674 * 124.22331 * 65.58366 * 15 14 13 18 18 C 1.46360 * 125.44652 * 351.24783 * 17 15 14 19 19 H 1.10357 * 108.25505 * 186.30835 * 18 17 15 20 20 C 1.52528 * 111.54167 * 67.37854 * 18 17 15 21 21 C 1.44556 * 111.63638 * 55.56971 * 12 2 1 22 22 H 1.09000 * 109.47576 * 303.52542 * 1 2 3 23 23 H 1.08998 * 109.47532 * 63.52655 * 1 2 3 24 24 H 1.08998 * 109.47232 * 183.53004 * 1 2 3 25 25 H 0.96999 * 120.00465 * 180.02562 * 7 6 4 26 26 H 1.09913 * 108.95697 * 321.61104 * 13 12 2 27 27 H 1.09546 * 108.99643 * 78.67913 * 13 12 2 28 28 H 1.08974 * 110.54702 * 50.23929 * 14 13 12 29 29 H 1.10259 * 108.84980 * 167.95799 * 14 13 12 30 30 H 0.98677 * 116.92601 * 172.87666 * 17 15 14 31 31 H 1.09005 * 109.46791 * 297.25257 * 20 18 17 32 32 H 1.08995 * 109.46760 * 57.24442 * 20 18 17 33 33 H 1.08994 * 109.47134 * 177.25224 * 20 18 17 34 34 H 1.09174 * 109.35096 * 276.02834 * 21 12 2 35 35 H 1.09748 * 109.27224 * 33.94186 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 1.4167 -1.4548 -1.7134 6 6 3.2778 -0.4097 -1.7399 7 7 3.7614 -1.1039 -2.7466 8 14 4.2780 0.9837 -1.0000 9 1 5.1834 0.4423 0.0452 10 1 5.0838 1.6339 -2.0644 11 1 3.3621 1.9823 -0.3927 12 7 2.0192 -0.6919 1.1983 13 6 1.9817 0.1655 2.3603 14 6 2.9034 -0.3043 3.4768 15 6 2.3361 -1.5321 4.1422 16 8 1.9965 -1.4466 5.3178 17 7 2.1906 -2.7063 3.5419 18 6 2.3794 -2.9580 2.1125 19 1 2.0769 -3.9982 1.9017 20 6 3.8396 -2.7943 1.7031 21 6 1.4805 -2.0296 1.2986 22 1 -0.3634 0.5676 0.8567 23 1 -0.3634 0.4581 -0.9199 24 1 -0.3633 -1.0257 0.0633 25 1 4.6378 -0.8928 -3.1048 26 1 2.2718 1.1831 2.0628 27 1 0.9538 0.2120 2.7362 28 1 3.9040 -0.4975 3.0909 29 1 2.9894 0.4974 4.2288 30 1 1.9096 -3.4651 4.1066 31 1 4.1516 -1.7640 1.8745 32 1 4.4606 -3.4654 2.2962 33 1 3.9498 -3.0362 0.6460 34 1 0.4944 -1.9884 1.7652 35 1 1.3602 -2.4481 0.2913 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038024.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:46 Heat of formation + Delta-G solvation = -55.631641 kcal Electronic energy + Delta-G solvation = -17037.108693 eV Core-core repulsion = 14455.012685 eV Total energy + Delta-G solvation = -2582.096008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19918 -38.90535 -36.50018 -34.57133 -33.10360 -31.86632 -29.75704 -27.39639 -27.06070 -24.94909 -22.56893 -20.73347 -20.32507 -18.86172 -18.34603 -17.37201 -16.63857 -16.17164 -15.85156 -15.37281 -15.17649 -14.78571 -14.56833 -14.22909 -13.85947 -13.56446 -13.05376 -12.98565 -12.85199 -12.64132 -12.49090 -12.27749 -12.03436 -11.78581 -11.64487 -11.37123 -10.98126 -10.76221 -10.64669 -10.11443 -8.57564 -8.16647 -6.22640 1.47796 1.50682 1.55641 1.56521 2.33899 2.49034 2.91107 3.50506 3.60637 3.96478 4.17825 4.21394 4.27403 4.36991 4.44406 4.54213 4.74254 4.78799 4.81566 4.84483 4.98512 5.07450 5.12400 5.17759 5.29178 5.43137 5.56345 5.75182 5.81980 6.27733 6.39994 6.62561 6.86336 6.99767 7.19950 7.49366 8.97818 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.010648 C = 0.010512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.041365 B = 2629.058058 C = 2662.895746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.185 3.815 3 H 0.049 0.951 4 C -0.491 4.491 5 H 0.035 0.965 6 C 0.038 3.962 7 N -0.942 5.942 8 Si 0.940 3.060 9 H -0.267 1.267 10 H -0.306 1.306 11 H -0.247 1.247 12 N -0.584 5.584 13 C 0.088 3.912 14 C -0.130 4.130 15 C 0.520 3.480 16 O -0.619 6.619 17 N -0.697 5.697 18 C 0.144 3.856 19 H 0.117 0.883 20 C -0.144 4.144 21 C 0.087 3.913 22 H 0.044 0.956 23 H 0.049 0.951 24 H 0.044 0.956 25 H 0.262 0.738 26 H 0.080 0.920 27 H 0.018 0.982 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.404 0.596 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -0.829 9.347 9.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.053 0.947 6 C -0.161 4.161 7 N -0.582 5.582 8 Si 0.767 3.233 9 H -0.192 1.192 10 H -0.233 1.233 11 H -0.172 1.172 12 N -0.310 5.310 13 C -0.040 4.040 14 C -0.170 4.170 15 C 0.308 3.692 16 O -0.504 6.504 17 N -0.346 5.346 18 C 0.040 3.960 19 H 0.135 0.865 20 C -0.202 4.202 21 C -0.042 4.042 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.036 0.964 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.241 0.759 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.865 -0.688 9.611 9.674 hybrid contribution -0.264 0.239 0.012 0.357 sum -1.129 -0.449 9.623 9.699 Atomic orbital electron populations 1.22230 0.98549 1.00531 1.00258 1.19648 0.90970 0.94429 0.86926 0.93344 1.20992 1.01114 1.22167 1.08663 0.94677 1.25654 0.98159 0.97952 0.94357 1.70062 1.18735 1.41823 1.27628 0.85826 0.79009 0.80708 0.77803 1.19222 1.23317 1.17171 1.57329 1.66649 1.03134 1.03871 1.21174 0.96644 0.96792 0.89426 1.21868 1.01139 0.95246 0.98788 1.20850 0.76546 0.85741 0.86043 1.91061 1.54000 1.86205 1.19167 1.45988 1.67482 1.10601 1.10535 1.21377 0.96515 1.00323 0.77828 0.86534 1.21810 0.94746 1.02394 1.01280 1.21494 0.93807 0.88627 1.00237 0.93707 0.93189 0.93700 0.92911 0.90118 0.96427 0.87934 0.87490 0.75883 0.92483 0.91898 0.92484 0.96349 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 8.81 71.98 0.63 -5.07 16 2 C 0.18 7.61 1.70 44.19 0.08 7.69 16 3 H 0.05 2.04 4.68 -2.39 -0.01 2.03 16 4 C -0.49 -24.79 7.72 25.60 0.20 -24.59 16 5 H 0.03 1.99 7.94 -2.91 -0.02 1.96 16 6 C 0.04 2.02 5.47 84.66 0.46 2.48 16 7 N -0.94 -54.62 13.96 21.45 0.30 -54.32 16 8 Si 0.94 41.84 27.63 68.60 1.90 43.74 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.31 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.25 -10.12 5.96 99.48 0.59 -9.53 16 12 N -0.58 -21.12 2.76 -886.92 -2.45 -23.57 16 13 C 0.09 2.79 4.97 86.50 0.43 3.22 16 14 C -0.13 -3.81 5.31 29.60 0.16 -3.65 16 15 C 0.52 16.48 7.09 87.99 0.62 17.11 16 16 O -0.62 -23.72 17.79 -7.53 -0.13 -23.85 16 17 N -0.70 -18.62 4.95 -443.74 -2.20 -20.82 16 18 C 0.14 3.92 3.43 44.77 0.15 4.08 16 19 H 0.12 2.53 8.25 -1.66 -0.01 2.51 16 20 C -0.14 -4.32 9.09 71.83 0.65 -3.66 16 21 C 0.09 2.89 3.56 86.65 0.31 3.20 16 22 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.04 1.61 6.66 -2.39 -0.02 1.60 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.08 2.47 7.58 -1.90 -0.01 2.45 16 27 H 0.02 0.57 7.88 -2.10 -0.02 0.55 16 28 H 0.10 2.95 6.19 -2.40 -0.01 2.94 16 29 H 0.11 2.82 8.17 -1.71 -0.01 2.80 16 30 H 0.40 9.20 8.87 -91.44 -0.81 8.38 16 31 H 0.06 1.88 5.00 -2.38 -0.01 1.87 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.02 0.60 7.66 -2.29 -0.02 0.59 16 35 H 0.08 3.04 6.53 -1.99 -0.01 3.02 16 Total: -1.00 -61.79 270.30 1.29 -60.49 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.18 Total: 17.54 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 3.70 Total: 0.79 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.35 Total: -98.71 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.13 Total: -23.85 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 1.90 Total: 43.74 kcal Total: -61.79 1.29 -60.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038024.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.863 kcal (2) G-P(sol) polarization free energy of solvation -61.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds