Wall clock time and date at job start Mon Mar 30 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47118 * 2 1 4 4 C 1.50699 * 109.47046 * 240.00099 * 2 1 3 5 5 H 1.08000 * 120.00127 * 275.00225 * 4 2 1 6 6 C 1.37877 * 120.00196 * 95.00207 * 4 2 1 7 7 N 1.31520 * 119.99789 * 184.91633 * 6 4 2 8 8 Si 1.86797 * 120.00186 * 4.91720 * 6 4 2 9 9 H 1.48492 * 109.47292 * 84.82995 * 8 6 4 10 10 H 1.48502 * 109.47403 * 204.83625 * 8 6 4 11 11 H 1.48503 * 109.46844 * 324.83034 * 8 6 4 12 12 N 1.46499 * 109.47134 * 119.99806 * 2 1 3 13 13 C 1.34772 * 120.00041 * 274.99910 * 12 2 1 14 14 O 1.21282 * 119.99947 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99945 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.90249 * 318.89788 * 15 13 12 17 17 N 1.47898 * 110.08142 * 197.68918 * 15 13 12 18 18 C 1.48529 * 105.82214 * 265.88476 * 17 15 13 19 19 C 1.54942 * 103.22427 * 320.79462 * 18 17 15 20 20 C 1.53990 * 109.92052 * 79.99735 * 15 13 12 21 21 H 1.09003 * 110.30901 * 359.41104 * 20 15 13 22 22 C 1.52997 * 110.31228 * 237.34405 * 20 15 13 23 23 H 1.09001 * 109.46829 * 175.03509 * 1 2 3 24 24 H 1.08996 * 109.46883 * 295.03974 * 1 2 3 25 25 H 1.09004 * 109.46915 * 55.03648 * 1 2 3 26 26 H 0.97003 * 119.99594 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99998 * 95.00206 * 12 2 1 28 28 H 1.00900 * 111.00061 * 145.36827 * 17 15 13 29 29 H 1.08997 * 110.67098 * 79.22268 * 18 17 15 30 30 H 1.08997 * 110.66925 * 202.19096 * 18 17 15 31 31 H 1.09003 * 110.72424 * 279.05332 * 19 18 17 32 32 H 1.09001 * 110.72384 * 155.77462 * 19 18 17 33 33 H 1.08994 * 109.47149 * 61.38587 * 22 20 15 34 34 H 1.08991 * 109.47433 * 181.39099 * 22 20 15 35 35 H 1.09004 * 109.47042 * 301.38771 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6132 -3.4622 8 14 2.3137 1.8791 -2.3175 9 1 3.5992 2.3948 -1.7822 10 1 2.1058 2.3991 -3.6928 11 1 1.1987 2.3275 -1.4451 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1587 2.4114 15 6 2.6500 -0.7285 3.5875 16 1 2.2047 -1.7214 3.6508 17 7 2.3141 0.0526 4.7976 18 6 3.5066 0.8909 5.0825 19 6 4.6903 -0.0578 4.7671 20 6 4.1847 -0.8442 3.5360 21 1 4.5672 -0.3973 2.6184 22 6 4.6101 -2.3109 3.6287 23 1 -0.3633 -1.0238 -0.0889 24 1 -0.3633 0.4349 0.9311 25 1 -0.3633 0.5889 -0.8422 26 1 2.9370 -0.1049 -4.2554 27 1 2.2491 -1.6317 1.1526 28 1 2.1062 -0.5564 5.5748 29 1 3.5284 1.7634 4.4295 30 1 3.5221 1.1949 6.1291 31 1 4.8789 -0.7306 5.6038 32 1 5.5860 0.5121 4.5197 33 1 4.2036 -2.8614 2.7803 34 1 5.6980 -2.3752 3.6159 35 1 4.2316 -2.7411 4.5559 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299918332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:34 Heat of formation + Delta-G solvation = -46.470940 kcal Electronic energy + Delta-G solvation = -16258.470166 eV Core-core repulsion = 13676.771395 eV Total energy + Delta-G solvation = -2581.698770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79746 -37.47545 -34.69839 -32.40210 -31.87990 -30.24443 -28.82266 -25.91803 -25.24598 -22.50663 -20.89167 -19.98260 -19.35297 -17.43500 -16.59132 -15.98523 -15.21054 -14.87791 -14.16034 -14.00951 -13.33179 -13.18065 -12.89304 -12.85534 -12.48484 -12.25541 -11.95072 -11.57470 -11.40009 -11.08958 -10.94289 -10.84507 -10.75437 -10.70158 -10.49264 -9.85002 -9.18184 -9.15111 -8.68425 -8.33158 -7.96781 -6.21356 -4.24403 3.27928 3.35686 3.38551 3.44329 3.88953 4.34947 4.41435 4.62321 4.80373 5.01111 5.17736 5.27381 5.37182 5.47081 5.49442 5.55984 5.72616 5.83265 5.96867 6.06047 6.09554 6.29257 6.40494 6.59607 6.72518 6.75654 7.00947 7.25095 7.39705 7.45938 7.64557 8.20760 8.66706 8.80441 9.14813 9.41828 10.90440 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033846 B = 0.007760 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.078650 B = 3607.536816 C = 3773.538325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.233 3.767 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.874 3.126 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.708 5.708 13 C 0.510 3.490 14 O -0.542 6.542 15 C 0.057 3.943 16 H 0.091 0.909 17 N -0.650 5.650 18 C 0.046 3.954 19 C -0.152 4.152 20 C -0.114 4.114 21 H 0.085 0.915 22 C -0.142 4.142 23 H 0.046 0.954 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.267 0.733 27 H 0.390 0.610 28 H 0.336 0.664 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -2.300 15.181 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.130 3.870 3 H 0.066 0.934 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.358 5.358 13 C 0.294 3.706 14 O -0.419 6.419 15 C -0.057 4.057 16 H 0.109 0.891 17 N -0.277 5.277 18 C -0.083 4.083 19 C -0.192 4.192 20 C -0.134 4.134 21 H 0.103 0.897 22 C -0.199 4.199 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.223 0.777 28 H 0.152 0.848 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.576 -0.893 14.671 14.922 hybrid contribution 0.835 -0.254 0.110 0.880 sum 3.411 -1.147 14.781 15.213 Atomic orbital electron populations 1.22212 0.98718 1.00456 0.99229 1.19074 0.90843 0.94247 0.82821 0.93412 1.21032 1.45040 0.95600 0.95005 0.90394 1.24941 0.93675 0.98601 0.95163 1.69890 1.44985 1.36138 1.01686 0.86892 0.79803 0.85915 0.77282 1.19934 1.21226 1.18454 1.46595 1.65564 1.13743 1.09848 1.20299 0.78408 0.87660 0.84225 1.90611 1.50340 1.16074 1.84872 1.22346 0.94799 0.96797 0.91764 0.89082 1.62203 1.37316 1.23224 1.04943 1.23137 0.86915 0.97224 1.01042 1.23209 0.99874 0.98702 0.97370 1.22339 0.94296 0.96895 0.99879 0.89666 1.21846 1.01523 0.94720 1.01845 0.93508 0.95144 0.93060 0.92303 0.77692 0.84788 0.89480 0.90920 0.91437 0.90814 0.91853 0.92313 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.47 37.16 0.35 -3.00 16 2 C 0.23 5.68 2.22 -69.08 -0.15 5.53 16 3 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -14.37 9.05 -34.44 -0.31 -14.68 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 8 Si 0.87 21.96 26.99 -169.99 -4.59 17.37 16 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.49 6.82 56.52 0.39 -6.11 16 12 N -0.71 -14.60 5.07 -54.93 -0.28 -14.88 16 13 C 0.51 10.20 6.83 -10.98 -0.07 10.13 16 14 O -0.54 -13.05 15.96 5.56 0.09 -12.96 16 15 C 0.06 0.84 3.36 -67.80 -0.23 0.61 16 16 H 0.09 1.14 7.68 -51.93 -0.40 0.74 16 17 N -0.65 -9.07 6.76 -104.34 -0.70 -9.77 16 18 C 0.05 0.58 7.39 -1.90 -0.01 0.57 16 19 C -0.15 -1.68 6.61 -24.87 -0.16 -1.85 16 20 C -0.11 -1.46 3.21 -89.27 -0.29 -1.75 16 21 H 0.08 1.31 7.68 -51.93 -0.40 0.91 16 22 C -0.14 -1.47 8.89 37.16 0.33 -1.13 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.39 7.07 8.59 -40.82 -0.35 6.72 16 28 H 0.34 3.66 8.92 -39.29 -0.35 3.31 16 29 H 0.09 1.35 8.01 -51.93 -0.42 0.93 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 287.23 15.07 4.33 4.33 Total: -1.00 -32.14 287.23 -6.55 -38.69 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.52 Total: 6.24 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.65 Total: -3.41 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.21 Total: -50.26 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.14 -6.55 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299918332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.780 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds